RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 CLASRPQ8N2M8 674 aaKnown RBP12.41□□□□□ -0.42
PCDH9-204ENST00000544246 DZIP1LQ8IYY4 767 aaKnown RBP12.41□□□□□ -0.42
PCDH9-204ENST00000544246 SYNJ2O15056 1496 aa12.41□□□□□ -0.42
PCDH9-204ENST00000544246 SYTL4Q96C24 671 aaPredicted RBP12.4□□□□□ -0.42
PCDH9-204ENST00000544246 NEUROD6Q96NK8 337 aa12.4□□□□□ -0.42
PCDH9-204ENST00000544246 EIF3JO75822 258 aaKnown RBP12.4□□□□□ -0.42
PCDH9-204ENST00000544246 MEX3CQ5U5Q3 659 aaKnown RBP12.4□□□□□ -0.42
PCDH9-204ENST00000544246 ERLIN1O75477 346 aa12.4□□□□□ -0.42
PCDH9-204ENST00000544246 FKBP5Q13451 457 aaPredicted RBP12.4□□□□□ -0.42
PCDH9-204ENST00000544246 KLHL34Q8N239 644 aa12.4□□□□□ -0.42
PCDH9-204ENST00000544246 ZNF396Q96N95 335 aaPredicted RBP12.39□□□□□ -0.43
PCDH9-204ENST00000544246 HMGN5P82970 282 aaKnown RBP12.39□□□□□ -0.43
PCDH9-204ENST00000544246 CCDC97Q96F63 343 aaPredicted RBP12.39□□□□□ -0.43
PCDH9-204ENST00000544246 DEF6Q9H4E7 631 aa12.39□□□□□ -0.43
PCDH9-204ENST00000544246 RNF214Q8ND24 703 aa12.39□□□□□ -0.43
PCDH9-204ENST00000544246 PHF23Q9BUL5 403 aaPredicted RBP12.39□□□□□ -0.43
PCDH9-204ENST00000544246 C22orf23Q9BZE7 217 aa12.39□□□□□ -0.43
PCDH9-204ENST00000544246 TRAK1Q9UPV9 953 aa12.39□□□□□ -0.43
PCDH9-204ENST00000544246 DHX37Q8IY37 1157 aaKnown RBP12.39□□□□□ -0.43
PCDH9-204ENST00000544246 CDC45O75419 566 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 SLC3A2P08195 630 aaKnown RBP12.38□□□□□ -0.43
PCDH9-204ENST00000544246 PANK3Q9H999 370 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 MAGI1Q96QZ7 1491 aaPredicted RBP12.38□□□□□ -0.43
PCDH9-204ENST00000544246 PPFIBP1Q86W92 1011 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 DACH1Q9UI36 760 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 IQCEQ6IPM2 695 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 CCDC112Q8NEF3 446 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 CENPHQ9H3R5 247 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 NEBLO76041 1014 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 TAF3Q5VWG9 929 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 CNTROBQ8N137 903 aa12.38□□□□□ -0.43
PCDH9-204ENST00000544246 FANCIQ9NVI1 1328 aa12.37□□□□□ -0.43
PCDH9-204ENST00000544246 DNAJC5Q9H3Z4 198 aa12.37□□□□□ -0.43
PCDH9-204ENST00000544246 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.37□□□□□ -0.43
PCDH9-204ENST00000544246 POGZQ7Z3K3 1410 aa12.37□□□□□ -0.43
PCDH9-204ENST00000544246 TBC1D2BQ9UPU7 963 aa12.37□□□□□ -0.43
PCDH9-204ENST00000544246 MBD3O95983 291 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 SERPINC1P01008 464 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 DESP17661 470 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 EVC2Q86UK5 1308 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 GIMAP7Q8NHV1 300 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 FMNL2Q96PY5 1086 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 STIM1Q13586 685 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 RIC3Q7Z5B4 369 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 CCDC91Q7Z6B0 441 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 TANGO6Q9C0B7 1094 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 UACAQ9BZF9 1416 aa12.36□□□□□ -0.43
PCDH9-204ENST00000544246 RAB3GAP2Q9H2M9 1393 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 WASHC2AQ641Q2 1341 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 URB2Q14146 1524 aaKnown RBP12.35□□□□□ -0.43
PCDH9-204ENST00000544246 DIAPH1O60610 1272 aaKnown RBP12.35□□□□□ -0.43
PCDH9-204ENST00000544246 FAM193AP78312 1265 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 FSD1Q9BTV5 496 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 ATP2B1P20020 1258 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 CAVIN1Q6NZI2 390 aaKnown RBP12.35□□□□□ -0.43
PCDH9-204ENST00000544246 PKNOX2Q96KN3 472 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 SLC26A8Q96RN1 970 aa12.35□□□□□ -0.43
PCDH9-204ENST00000544246 RIPK4P57078 832 aa12.34□□□□□ -0.43
PCDH9-204ENST00000544246 STK38Q15208 465 aa12.34□□□□□ -0.43
PCDH9-204ENST00000544246 RBM10P98175 930 aaKnown RBP12.34□□□□□ -0.43
PCDH9-204ENST00000544246 ZNF608Q9ULD9 1512 aaPredicted RBP12.34□□□□□ -0.43
PCDH9-204ENST00000544246 CBFA2T2O43439 604 aa12.34□□□□□ -0.43
PCDH9-204ENST00000544246 SPC24Q8NBT2 197 aa12.34□□□□□ -0.43
PCDH9-204ENST00000544246 LRRCC1Q9C099 1032 aa12.33□□□□□ -0.43
PCDH9-204ENST00000544246 TSPYL4Q9UJ04 414 aa12.33□□□□□ -0.43
PCDH9-204ENST00000544246 DCAF8L1A6NGE4 600 aa12.33□□□□□ -0.44
PCDH9-204ENST00000544246 JAKMIP3Q5VZ66 844 aa12.33□□□□□ -0.44
PCDH9-204ENST00000544246 JMYQ8N9B5 988 aa12.33□□□□□ -0.44
PCDH9-204ENST00000544246 SEPT11Q9NVA2 429 aaKnown RBP12.33□□□□□ -0.44
PCDH9-204ENST00000544246 NF2P35240 595 aa12.33□□□□□ -0.44
PCDH9-204ENST00000544246 L3MBTL2Q969R5 705 aa12.33□□□□□ -0.44
PCDH9-204ENST00000544246 HIP1O00291 1037 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 STAMBPO95630 424 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 PDCP20941 246 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 NFKBIBQ15653 356 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 LNPKQ9C0E8 428 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 ZBED9Q6R2W3 1325 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 UBTFL1P0CB47 393 aaPredicted RBP12.32□□□□□ -0.44
PCDH9-204ENST00000544246 TRAK2O60296 914 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 ZHX3Q9H4I2 956 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 CUX1P39880 1505 aa12.32□□□□□ -0.44
PCDH9-204ENST00000544246 GNAI1P63096 354 aa12.31□□□□□ -0.44
PCDH9-204ENST00000544246 DNAJC2Q99543 621 aaKnown RBP12.31□□□□□ -0.44
PCDH9-204ENST00000544246 APAF1O14727 1248 aa12.31□□□□□ -0.44
PCDH9-204ENST00000544246 PRPF40AO75400 957 aaKnown RBP12.31□□□□□ -0.44
PCDH9-204ENST00000544246 MCM2P49736 904 aa12.3□□□□□ -0.44
PCDH9-204ENST00000544246 MAP2K1Q02750 393 aaPredicted RBP12.3□□□□□ -0.44
PCDH9-204ENST00000544246 AIMP1Q12904 312 aaKnown RBP12.3□□□□□ -0.44
PCDH9-204ENST00000544246 AAMPQ13685 434 aa12.3□□□□□ -0.44
PCDH9-204ENST00000544246 CEP63Q96MT8 703 aa12.3□□□□□ -0.44
PCDH9-204ENST00000544246 CCDC102AQ96A19 550 aa12.3□□□□□ -0.44
PCDH9-204ENST00000544246 CCDC192P0DO97 292 aa12.3□□□□□ -0.44
PCDH9-204ENST00000544246 TAF4BQ92750 862 aa12.3□□□□□ -0.44
PCDH9-204ENST00000544246 CEBPZQ03701 1054 aaKnown RBP12.29□□□□□ -0.44
PCDH9-204ENST00000544246 GOLGA6L10A0A0M3HER8 536 aa12.29□□□□□ -0.44
PCDH9-204ENST00000544246 PSME1Q06323 249 aa12.29□□□□□ -0.44
PCDH9-204ENST00000544246 PPM1EQ8WY54 764 aa12.29□□□□□ -0.44
PCDH9-204ENST00000544246 LRRFIP2Q9Y608 721 aaKnown RBP12.29□□□□□ -0.44
PCDH9-204ENST00000544246 TRIM21P19474 475 aaKnown RBP12.28□□□□□ -0.44
PCDH9-204ENST00000544246 MATR3P43243 847 aaKnown RBP eCLIP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms