RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 XRN1Q8IZH2 1706 aaKnown RBP18.74■□□□□ 0.59
SFSWAP-210ENST00000541286 PPIP5K1Q6PFW1 1433 aa18.74■□□□□ 0.59
SFSWAP-210ENST00000541286 LMOD2Q6P5Q4 547 aa18.73■□□□□ 0.59
SFSWAP-210ENST00000541286 NME9Q86XW9 330 aa18.73■□□□□ 0.59
SFSWAP-210ENST00000541286 NSD3Q9BZ95 1437 aa18.73■□□□□ 0.59
SFSWAP-210ENST00000541286 ACEP12821 1306 aa18.73■□□□□ 0.59
SFSWAP-210ENST00000541286 CCDC61Q9Y6R9 512 aa18.72■□□□□ 0.59
SFSWAP-210ENST00000541286 FAM135BQ49AJ0 1406 aa18.72■□□□□ 0.59
SFSWAP-210ENST00000541286 NGDNQ8NEJ9 315 aaKnown RBP18.72■□□□□ 0.59
SFSWAP-210ENST00000541286 BRD4O60885 1362 aaPredicted RBP18.72■□□□□ 0.59
SFSWAP-210ENST00000541286 NALCNQ8IZF0 1738 aa18.72■□□□□ 0.59
SFSWAP-210ENST00000541286 SBNO2Q9Y2G9 1366 aa18.71■□□□□ 0.59
SFSWAP-210ENST00000541286 CDCA8Q53HL2 280 aa18.71■□□□□ 0.59
SFSWAP-210ENST00000541286 AMER1Q5JTC6 1135 aaPredicted RBP18.7■□□□□ 0.58
SFSWAP-210ENST00000541286 DLC1Q96QB1 1528 aa18.7■□□□□ 0.58
SFSWAP-210ENST00000541286 NKTRP30414 1462 aaKnown RBP18.7■□□□□ 0.58
SFSWAP-210ENST00000541286 PDE4AP27815 886 aa18.7■□□□□ 0.58
SFSWAP-210ENST00000541286 PTCH1Q13635 1447 aa18.69■□□□□ 0.58
SFSWAP-210ENST00000541286 DIP2AQ14689 1571 aa18.69■□□□□ 0.58
SFSWAP-210ENST00000541286 ATP7BP35670 1465 aa18.69■□□□□ 0.58
SFSWAP-210ENST00000541286 CD163L1Q9NR16 1453 aa18.69■□□□□ 0.58
SFSWAP-210ENST00000541286 UBE2Q2Q8WVN8 375 aa18.69■□□□□ 0.58
SFSWAP-210ENST00000541286 RNF123Q5XPI4 1314 aa18.69■□□□□ 0.58
SFSWAP-210ENST00000541286 PPM1GO15355 546 aaPredicted RBP18.68■□□□□ 0.58
SFSWAP-210ENST00000541286 ARXQ96QS3 562 aa18.67■□□□□ 0.58
SFSWAP-210ENST00000541286 ATF3P18847 181 aa18.67■□□□□ 0.58
SFSWAP-210ENST00000541286 PIP4K2BP78356 416 aa18.66■□□□□ 0.58
SFSWAP-210ENST00000541286 C19orf44Q9H6X5 657 aa18.66■□□□□ 0.58
SFSWAP-210ENST00000541286 KNDC1Q76NI1 1749 aa18.66■□□□□ 0.58
SFSWAP-210ENST00000541286 PIK3R4Q99570 1358 aa18.66■□□□□ 0.58
SFSWAP-210ENST00000541286 CRBNQ96SW2 442 aa18.66■□□□□ 0.58
SFSWAP-210ENST00000541286 SIRT1Q96EB6 747 aa18.65■□□□□ 0.58
SFSWAP-210ENST00000541286 USP32Q8NFA0 1604 aa18.65■□□□□ 0.58
SFSWAP-210ENST00000541286 ZBTB7CA1YPR0 619 aa18.65■□□□□ 0.58
SFSWAP-210ENST00000541286 FYB1O15117 783 aa18.65■□□□□ 0.58
SFSWAP-210ENST00000541286 FRAT1Q92837 279 aaPredicted RBP18.64■□□□□ 0.58
SFSWAP-210ENST00000541286 WDR43Q15061 677 aaKnown RBP eCLIP18.64■□□□□ 0.577e-6■■■■■ 27.3
SFSWAP-210ENST00000541286 LRRC7Q96NW7 1537 aa18.64■□□□□ 0.57
SFSWAP-210ENST00000541286 ADGRL3Q9HAR2 1447 aa18.64■□□□□ 0.57
SFSWAP-210ENST00000541286 ADAMTS8Q9UP79 889 aa18.64■□□□□ 0.57
SFSWAP-210ENST00000541286 PHF8Q9UPP1 1060 aa18.63■□□□□ 0.57
SFSWAP-210ENST00000541286 ATAD2Q6PL18 1390 aa18.63■□□□□ 0.57
SFSWAP-210ENST00000541286 HDGFL2Q7Z4V5 671 aaPredicted RBP18.62■□□□□ 0.57
SFSWAP-210ENST00000541286 RRS1Q15050 365 aaKnown RBP18.62■□□□□ 0.57
SFSWAP-210ENST00000541286 C20orf194Q5TEA3 1177 aa18.62■□□□□ 0.57
SFSWAP-210ENST00000541286 CABLES1Q8TDN4 633 aa18.62■□□□□ 0.57
SFSWAP-210ENST00000541286 TERF2IPQ9NYB0 399 aa18.62■□□□□ 0.57
SFSWAP-210ENST00000541286 CCDC146Q8IYE0 955 aa18.62■□□□□ 0.57
SFSWAP-210ENST00000541286 GSE1Q14687 1217 aa18.61■□□□□ 0.57
SFSWAP-210ENST00000541286 ANKRD36BQ8N2N9 1353 aa18.61■□□□□ 0.57
SFSWAP-210ENST00000541286 MORC1Q86VD1 984 aa18.61■□□□□ 0.57
SFSWAP-210ENST00000541286 XIRP1Q702N8 1843 aaKnown RBP18.61■□□□□ 0.57
SFSWAP-210ENST00000541286 PSME1Q06323 249 aa18.6■□□□□ 0.57
SFSWAP-210ENST00000541286 DMRT2Q9Y5R5 561 aa18.59■□□□□ 0.57
SFSWAP-210ENST00000541286 TCERG1O14776 1098 aaKnown RBP18.58■□□□□ 0.57
SFSWAP-210ENST00000541286 NFKBIBQ15653 356 aa18.58■□□□□ 0.57
SFSWAP-210ENST00000541286 SLAIN2Q9P270 581 aa18.58■□□□□ 0.57
SFSWAP-210ENST00000541286 PDE3BQ13370 1112 aa18.58■□□□□ 0.56
SFSWAP-210ENST00000541286 MSH6P52701 1360 aa18.58■□□□□ 0.56
SFSWAP-210ENST00000541286 DAXXQ9UER7 740 aaPredicted RBP18.57■□□□□ 0.56
SFSWAP-210ENST00000541286 PPP2R1AP30153 589 aa18.57■□□□□ 0.56
SFSWAP-210ENST00000541286 PARD3Q8TEW0 1356 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 NWD1Q149M9 1564 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 ABTB2Q8N961 1025 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 EMILIN1Q9Y6C2 1016 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 BRINP3Q76B58 766 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 CGNL1Q0VF96 1302 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 TTC21BQ7Z4L5 1316 aa18.56■□□□□ 0.56
SFSWAP-210ENST00000541286 RGS3P49796 1198 aa18.55■□□□□ 0.56
SFSWAP-210ENST00000541286 NLRP6P59044 892 aa18.55■□□□□ 0.56
SFSWAP-210ENST00000541286 C1orf167Q5SNV9 1468 aa18.55■□□□□ 0.56
SFSWAP-210ENST00000541286 BACH2Q9BYV9 841 aa18.55■□□□□ 0.56
SFSWAP-210ENST00000541286 PLEKHG3A1L390 1219 aa18.54■□□□□ 0.56
SFSWAP-210ENST00000541286 MTHFSP49914 203 aa18.54■□□□□ 0.56
SFSWAP-210ENST00000541286 MST1RQ04912 1400 aa18.54■□□□□ 0.56
SFSWAP-210ENST00000541286 CPSF1Q10570 1443 aaKnown RBP18.54■□□□□ 0.56
SFSWAP-210ENST00000541286 CADPS2Q86UW7 1296 aa18.53■□□□□ 0.56
SFSWAP-210ENST00000541286 KRT28Q7Z3Y7 464 aa18.52■□□□□ 0.56
SFSWAP-210ENST00000541286 FMN2Q9NZ56 1722 aa18.52■□□□□ 0.56
SFSWAP-210ENST00000541286 NEUROD2Q15784 382 aa18.51■□□□□ 0.55
SFSWAP-210ENST00000541286 SLC24A1O60721 1099 aa18.51■□□□□ 0.55
SFSWAP-210ENST00000541286 ADGRB2O60241 1585 aa18.51■□□□□ 0.55
SFSWAP-210ENST00000541286 USP6P35125 1406 aa18.51■□□□□ 0.55
SFSWAP-210ENST00000541286 FRAT2O75474 233 aaPredicted RBP18.51■□□□□ 0.55
SFSWAP-210ENST00000541286 UBAP1LF5GYI3 381 aa18.49■□□□□ 0.55
SFSWAP-210ENST00000541286 LTV1Q96GA3 475 aaPredicted RBP18.49■□□□□ 0.55
SFSWAP-210ENST00000541286 USP35Q9P2H5 1018 aa18.49■□□□□ 0.55
SFSWAP-210ENST00000541286 ZC3H6P61129 1189 aaKnown RBP18.48■□□□□ 0.55
SFSWAP-210ENST00000541286 CDC42BPGQ6DT37 1551 aa18.48■□□□□ 0.55
SFSWAP-210ENST00000541286 LTBP4Q8N2S1 1624 aa18.48■□□□□ 0.55
SFSWAP-210ENST00000541286 APAF1O14727 1248 aa18.47■□□□□ 0.55
SFSWAP-210ENST00000541286 COG3Q96JB2 828 aa18.47■□□□□ 0.55
SFSWAP-210ENST00000541286 GOLGA2Q08379 1002 aa18.46■□□□□ 0.55
SFSWAP-210ENST00000541286 PUS7Q96PZ0 661 aaKnown RBP18.46■□□□□ 0.55
SFSWAP-210ENST00000541286 TOPAZ1Q8N9V7 1692 aa18.45■□□□□ 0.54
SFSWAP-210ENST00000541286 ZNF692Q9BU19 519 aaPredicted RBP18.45■□□□□ 0.54
SFSWAP-210ENST00000541286 POLKQ9UBT6 870 aa18.45■□□□□ 0.54
SFSWAP-210ENST00000541286 CHRNA2Q15822 529 aa18.44■□□□□ 0.54
SFSWAP-210ENST00000541286 POLR3AO14802 1390 aaPredicted RBP18.44■□□□□ 0.54
SFSWAP-210ENST00000541286 CANXP27824 592 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms