RNA–Protein interactions for RNA: ENST00000539952.5

CPSF7-219, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 953 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-219ENST00000539952 EP400Q96L91 3159 aa8.85□□□□□ -0.99
CPSF7-219ENST00000539952 DHX57Q6P158 1386 aaKnown RBP8.85□□□□□ -0.99
CPSF7-219ENST00000539952 SPATA31A5Q5VU36 1347 aa8.84□□□□□ -0.99
CPSF7-219ENST00000539952 SPATA31A7Q8IWB4 1347 aa8.84□□□□□ -0.99
CPSF7-219ENST00000539952 LRP5O75197 1615 aa8.84□□□□□ -0.99
CPSF7-219ENST00000539952 PMFBP1Q8TBY8 1022 aa8.84□□□□□ -0.99
CPSF7-219ENST00000539952 PLEKHH1Q9ULM0 1364 aa8.84□□□□□ -0.99
CPSF7-219ENST00000539952 APBA3O96018 575 aa8.83□□□□□ -1
CPSF7-219ENST00000539952 FAM182BQ5T319 152 aa8.83□□□□□ -1
CPSF7-219ENST00000539952 PPARGC1BQ86YN6 1023 aaKnown RBP8.83□□□□□ -1
CPSF7-219ENST00000539952 POGKQ9P215 609 aa8.83□□□□□ -1
CPSF7-219ENST00000539952 GPRASP1Q5JY77 1395 aa8.83□□□□□ -1
CPSF7-219ENST00000539952 YTHDC2Q9H6S0 1430 aaKnown RBP8.82□□□□□ -1
CPSF7-219ENST00000539952 RRBP1Q9P2E9 1410 aaKnown RBP8.82□□□□□ -1
CPSF7-219ENST00000539952 TRIM37O94972 964 aa8.82□□□□□ -1
CPSF7-219ENST00000539952 PARD3Q8TEW0 1356 aa8.82□□□□□ -1
CPSF7-219ENST00000539952 BRWD3Q6RI45 1802 aa8.82□□□□□ -1
CPSF7-219ENST00000539952 ACIN1Q9UKV3 1341 aaKnown RBP8.81□□□□□ -1
CPSF7-219ENST00000539952 C11orf95C9JLR9 678 aaPredicted RBP8.81□□□□□ -1
CPSF7-219ENST00000539952 ZEB1P37275 1124 aaPredicted RBP8.81□□□□□ -1
CPSF7-219ENST00000539952 PDE3BQ13370 1112 aa8.81□□□□□ -1
CPSF7-219ENST00000539952 PRAM1Q96QH2 718 aa8.81□□□□□ -1
CPSF7-219ENST00000539952 MPHOSPH9Q99550 1183 aa8.81□□□□□ -1
CPSF7-219ENST00000539952 PCGF6Q9BYE7 350 aa8.81□□□□□ -1
CPSF7-219ENST00000539952 SPON1Q9HCB6 807 aa8.81□□□□□ -1
CPSF7-219ENST00000539952 PRDM11Q9NQV5 511 aa8.81□□□□□ -1
CPSF7-219ENST00000539952 DISP2A7MBM2 1401 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 USP32Q8NFA0 1604 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 SPDYE4A6NLX3 237 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 KCNQ2O43526 872 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 EVA1CP58658 441 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 SAFB2Q14151 953 aaKnown RBP eCLIP8.8□□□□□ -1
CPSF7-219ENST00000539952 CFAP70Q5T0N1 1121 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 NGDNQ8NEJ9 315 aaKnown RBP8.8□□□□□ -1
CPSF7-219ENST00000539952 PPP1R1BQ9UD71 204 aaPredicted RBP8.8□□□□□ -1
CPSF7-219ENST00000539952 NRXN1Q9ULB1 1477 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 SPATA31A1Q5TZJ5 1347 aa8.8□□□□□ -1
CPSF7-219ENST00000539952 KIF1AQ12756 1690 aa8.79□□□□□ -1
CPSF7-219ENST00000539952 PAK3O75914 559 aaPredicted RBP8.79□□□□□ -1
CPSF7-219ENST00000539952 BARGINQ6ZT62 677 aa8.79□□□□□ -1
CPSF7-219ENST00000539952 NWD2Q9ULI1 1742 aa8.79□□□□□ -1
CPSF7-219ENST00000539952 TRIM26Q12899 539 aaPredicted RBP8.78□□□□□ -1
CPSF7-219ENST00000539952 SPATA31E1Q6ZUB1 1445 aa8.78□□□□□ -1
CPSF7-219ENST00000539952 ANKARQ7Z5J8 1434 aa8.78□□□□□ -1
CPSF7-219ENST00000539952 EIF3AQ14152 1382 aaKnown RBP8.77□□□□□ -1.01
CPSF7-219ENST00000539952 PPLO60437 1756 aa8.77□□□□□ -1.01
CPSF7-219ENST00000539952 WASLO00401 505 aaPredicted RBP8.77□□□□□ -1.01
CPSF7-219ENST00000539952 STRN4Q9NRL3 753 aa8.77□□□□□ -1.01
CPSF7-219ENST00000539952 ZBTB12Q9Y330 459 aaPredicted RBP8.77□□□□□ -1.01
CPSF7-219ENST00000539952 PIK3C2GO75747 1445 aa8.77□□□□□ -1.01
CPSF7-219ENST00000539952 PLSCR1O15162 318 aa8.76□□□□□ -1.01
CPSF7-219ENST00000539952 STAC3Q96MF2 364 aa8.76□□□□□ -1.01
CPSF7-219ENST00000539952 TRAK1Q9UPV9 953 aa8.76□□□□□ -1.01
CPSF7-219ENST00000539952 THRAP3Q9Y2W1 955 aaKnown RBP8.76□□□□□ -1.01
CPSF7-219ENST00000539952 FMN2Q9NZ56 1722 aa8.75□□□□□ -1.01
CPSF7-219ENST00000539952 ZC3H6P61129 1189 aaKnown RBP8.75□□□□□ -1.01
CPSF7-219ENST00000539952 CHRNA2Q15822 529 aa8.75□□□□□ -1.01
CPSF7-219ENST00000539952 TCP11L2Q8N4U5 519 aa8.75□□□□□ -1.01
CPSF7-219ENST00000539952 HIRIP3Q9BW71 556 aaPredicted RBP8.75□□□□□ -1.01
CPSF7-219ENST00000539952 USP35Q9P2H5 1018 aa8.75□□□□□ -1.01
CPSF7-219ENST00000539952 MINK1Q8N4C8 1332 aaPredicted RBP8.74□□□□□ -1.01
CPSF7-219ENST00000539952 KIAA0232Q92628 1395 aa8.73□□□□□ -1.01
CPSF7-219ENST00000539952 NINLQ9Y2I6 1382 aa8.73□□□□□ -1.01
CPSF7-219ENST00000539952 NUDT16Q96DE0 195 aaKnown RBP8.73□□□□□ -1.01
CPSF7-219ENST00000539952 RGPD1P0DJD0 1748 aa8.73□□□□□ -1.01
CPSF7-219ENST00000539952 PRR36Q9H6K5 1346 aa8.73□□□□□ -1.01
CPSF7-219ENST00000539952 PLCH1Q4KWH8 1693 aa8.72□□□□□ -1.01
CPSF7-219ENST00000539952 COL14A1Q05707 1796 aaKnown RBP8.72□□□□□ -1.01
CPSF7-219ENST00000539952 SLC34A2O95436 690 aa8.72□□□□□ -1.01
CPSF7-219ENST00000539952 LARP1Q6PKG0 1096 aaKnown RBP8.72□□□□□ -1.01
CPSF7-219ENST00000539952 KNDC1Q76NI1 1749 aa8.71□□□□□ -1.01
CPSF7-219ENST00000539952 SENP3-EIF4A1A0A087X0R7 540 aa8.71□□□□□ -1.02
CPSF7-219ENST00000539952 NLRP13Q86W25 1043 aa8.71□□□□□ -1.02
CPSF7-219ENST00000539952 ABTB2Q8N961 1025 aa8.71□□□□□ -1.02
CPSF7-219ENST00000539952 CCDC61Q9Y6R9 512 aa8.71□□□□□ -1.02
CPSF7-219ENST00000539952 RGPD8O14715 1765 aaPredicted RBP8.71□□□□□ -1.02
CPSF7-219ENST00000539952 DLC1Q96QB1 1528 aa8.7□□□□□ -1.02
CPSF7-219ENST00000539952 PLEKHG3A1L390 1219 aa8.7□□□□□ -1.02
CPSF7-219ENST00000539952 NUTM2GQ5VZR2 741 aa8.7□□□□□ -1.02
CPSF7-219ENST00000539952 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
CPSF7-219ENST00000539952 ZNF784Q8NCA9 323 aaPredicted RBP8.7□□□□□ -1.02
CPSF7-219ENST00000539952 CDK19Q9BWU1 502 aa8.7□□□□□ -1.02
CPSF7-219ENST00000539952 BCL11BQ9C0K0 894 aaPredicted RBP8.7□□□□□ -1.02
CPSF7-219ENST00000539952 KDM2AQ9Y2K7 1162 aa8.7□□□□□ -1.02
CPSF7-219ENST00000539952 ADGRB2O60241 1585 aa8.69□□□□□ -1.02
CPSF7-219ENST00000539952 GCP02774 474 aa8.69□□□□□ -1.02
CPSF7-219ENST00000539952 DCAF11Q8TEB1 546 aa8.69□□□□□ -1.02
CPSF7-219ENST00000539952 SYT17Q9BSW7 474 aa8.69□□□□□ -1.02
CPSF7-219ENST00000539952 CDCA7Q9BWT1 371 aaPredicted RBP8.69□□□□□ -1.02
CPSF7-219ENST00000539952 ACEP12821 1306 aa8.69□□□□□ -1.02
CPSF7-219ENST00000539952 THSD7AQ9UPZ6 1657 aa8.69□□□□□ -1.02
CPSF7-219ENST00000539952 DDB1Q16531 1140 aa8.68□□□□□ -1.02
CPSF7-219ENST00000539952 PCDH10Q9P2E7 1040 aa8.68□□□□□ -1.02
CPSF7-219ENST00000539952 SSH2Q76I76 1423 aa8.68□□□□□ -1.02
CPSF7-219ENST00000539952 NRAPQ86VF7 1730 aa8.68□□□□□ -1.02
CPSF7-219ENST00000539952 CPDO75976 1380 aa8.67□□□□□ -1.02
CPSF7-219ENST00000539952 C1QTNF8P60827 252 aa8.67□□□□□ -1.02
CPSF7-219ENST00000539952 PROM2Q8N271 834 aa8.67□□□□□ -1.02
CPSF7-219ENST00000539952 STK32BQ9NY57 414 aa8.67□□□□□ -1.02
CPSF7-219ENST00000539952 IFT172Q9UG01 1749 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms