RNA–Protein interactions for RNA: ENST00000535789.1

ATL3-202, Transcript of atlastin GTPase 3, humanhuman

TSL 4

Gene ATL3, Length 828 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-202ENST00000535789 COL14A1Q05707 1796 aaKnown RBP23.47■■□□□ 1.35
ATL3-202ENST00000535789 PIK3C2AO00443 1686 aa23.47■■□□□ 1.35
ATL3-202ENST00000535789 ACEP12821 1306 aa23.46■■□□□ 1.35
ATL3-202ENST00000535789 BRWD3Q6RI45 1802 aa23.46■■□□□ 1.35
ATL3-202ENST00000535789 NGDNQ8NEJ9 315 aaKnown RBP23.45■■□□□ 1.34
ATL3-202ENST00000535789 CCDC61Q9Y6R9 512 aa23.45■■□□□ 1.34
ATL3-202ENST00000535789 SBNO2Q9Y2G9 1366 aa23.44■■□□□ 1.34
ATL3-202ENST00000535789 PLEKHG3A1L390 1219 aa23.44■■□□□ 1.34
ATL3-202ENST00000535789 PLEKHG5O94827 1062 aa23.44■■□□□ 1.34
ATL3-202ENST00000535789 USP21Q9UK80 565 aa23.44■■□□□ 1.34
ATL3-202ENST00000535789 EP400Q96L91 3159 aa23.44■■□□□ 1.34
ATL3-202ENST00000535789 SRPK2P78362 688 aaKnown RBP23.43■■□□□ 1.34
ATL3-202ENST00000535789 LMOD2Q6P5Q4 547 aa23.43■■□□□ 1.34
ATL3-202ENST00000535789 QTRT2Q9H974 415 aaKnown RBP23.43■■□□□ 1.34
ATL3-202ENST00000535789 RXRBP28702 533 aa23.42■■□□□ 1.34
ATL3-202ENST00000535789 CARD11Q9BXL7 1154 aa23.41■■□□□ 1.34
ATL3-202ENST00000535789 RBM6P78332 1123 aaKnown RBP23.39■■□□□ 1.33
ATL3-202ENST00000535789 USP6P35125 1406 aa23.39■■□□□ 1.33
ATL3-202ENST00000535789 SSH2Q76I76 1423 aa23.39■■□□□ 1.33
ATL3-202ENST00000535789 LMO7Q8WWI1 1683 aa23.38■■□□□ 1.33
ATL3-202ENST00000535789 EVC2Q86UK5 1308 aa23.38■■□□□ 1.33
ATL3-202ENST00000535789 PAK3O75914 559 aaPredicted RBP23.37■■□□□ 1.33
ATL3-202ENST00000535789 TRPC5Q9UL62 973 aaPredicted RBP23.37■■□□□ 1.33
ATL3-202ENST00000535789 USP54Q70EL1 1684 aa23.37■■□□□ 1.33
ATL3-202ENST00000535789 CD163L1Q9NR16 1453 aa23.36■■□□□ 1.33
ATL3-202ENST00000535789 CABP1Q9NZU7 370 aa23.35■■□□□ 1.33
ATL3-202ENST00000535789 SLIT3O75094 1523 aa23.34■■□□□ 1.33
ATL3-202ENST00000535789 FAM83GA6ND36 823 aa23.33■■□□□ 1.33
ATL3-202ENST00000535789 HAP1P54257 671 aaPredicted RBP23.33■■□□□ 1.33
ATL3-202ENST00000535789 NUTM2GQ5VZR2 741 aa23.33■■□□□ 1.33
ATL3-202ENST00000535789 UNC5CLQ8IV45 518 aa23.33■■□□□ 1.33
ATL3-202ENST00000535789 CPSF1Q10570 1443 aaKnown RBP23.32■■□□□ 1.32
ATL3-202ENST00000535789 COL18A1P39060 1754 aa23.32■■□□□ 1.32
ATL3-202ENST00000535789 USP19O94966 1318 aa23.32■■□□□ 1.32
ATL3-202ENST00000535789 CLSPNQ9HAW4 1339 aa23.32■■□□□ 1.32
ATL3-202ENST00000535789 RGPD5Q99666 1765 aa23.31■■□□□ 1.32
ATL3-202ENST00000535789 ATAD2Q6PL18 1390 aa23.3■■□□□ 1.32
ATL3-202ENST00000535789 MYOM1P52179 1685 aa23.29■■□□□ 1.32
ATL3-202ENST00000535789 TESK2Q96S53 571 aa23.29■■□□□ 1.32
ATL3-202ENST00000535789 THSD7AQ9UPZ6 1657 aa23.28■■□□□ 1.32
ATL3-202ENST00000535789 BRD4O60885 1362 aaPredicted RBP23.28■■□□□ 1.32
ATL3-202ENST00000535789 KIAA0232Q92628 1395 aa23.28■■□□□ 1.32
ATL3-202ENST00000535789 GJD4Q96KN9 370 aaPredicted RBP23.28■■□□□ 1.32
ATL3-202ENST00000535789 CAMTA1Q9Y6Y1 1673 aa23.26■■□□□ 1.31
ATL3-202ENST00000535789 USP47Q96K76 1375 aa23.26■■□□□ 1.31
ATL3-202ENST00000535789 WNK3Q9BYP7 1800 aa23.25■■□□□ 1.31
ATL3-202ENST00000535789 ST20-MTHFSA0A0A6YYL1 179 aa23.25■■□□□ 1.31
ATL3-202ENST00000535789 ABTB2Q8N961 1025 aa23.25■■□□□ 1.31
ATL3-202ENST00000535789 UPF1Q92900 1129 aaKnown RBP eCLIP23.25■■□□□ 1.31
ATL3-202ENST00000535789 LTN1O94822 1766 aa23.24■■□□□ 1.31
ATL3-202ENST00000535789 VPS72Q15906 364 aa23.24■■□□□ 1.31
ATL3-202ENST00000535789 BTG4Q9NY30 223 aa23.24■■□□□ 1.31
ATL3-202ENST00000535789 NFAT5O94916 1531 aa23.23■■□□□ 1.31
ATL3-202ENST00000535789 CPDO75976 1380 aa23.22■■□□□ 1.31
ATL3-202ENST00000535789 CHRNA2Q15822 529 aa23.21■■□□□ 1.31
ATL3-202ENST00000535789 PRDM11Q9NQV5 511 aa23.21■■□□□ 1.31
ATL3-202ENST00000535789 KTN1Q86UP2 1357 aaKnown RBP23.2■■□□□ 1.3
ATL3-202ENST00000535789 TTC21BQ7Z4L5 1316 aa23.2■■□□□ 1.3
ATL3-202ENST00000535789 ZC3H6P61129 1189 aaKnown RBP23.2■■□□□ 1.3
ATL3-202ENST00000535789 A0A1W2PP64 1363 aa23.19■■□□□ 1.3
ATL3-202ENST00000535789 TIMELESSQ9UNS1 1208 aa23.19■■□□□ 1.3
ATL3-202ENST00000535789 COL5A2P05997 1499 aaPredicted RBP23.17■■□□□ 1.3
ATL3-202ENST00000535789 GCP02774 474 aa23.16■■□□□ 1.3
ATL3-202ENST00000535789 NLRP13Q86W25 1043 aa23.16■■□□□ 1.3
ATL3-202ENST00000535789 SLC12A5Q9H2X9 1139 aa23.16■■□□□ 1.3
ATL3-202ENST00000535789 KIF20BQ96Q89 1820 aa23.16■■□□□ 1.3
ATL3-202ENST00000535789 CCER1Q8TC90 406 aaPredicted RBP23.15■■□□□ 1.3
ATL3-202ENST00000535789 SPATA31A5Q5VU36 1347 aa23.14■■□□□ 1.3
ATL3-202ENST00000535789 SPATA31A7Q8IWB4 1347 aa23.14■■□□□ 1.3
ATL3-202ENST00000535789 TTC21AQ8NDW8 1320 aa23.14■■□□□ 1.3
ATL3-202ENST00000535789 ONECUT3O60422 494 aaPredicted RBP23.14■■□□□ 1.29
ATL3-202ENST00000535789 NLRP6P59044 892 aa23.14■■□□□ 1.29
ATL3-202ENST00000535789 ZNF692Q9BU19 519 aaPredicted RBP23.14■■□□□ 1.29
ATL3-202ENST00000535789 PARP4Q9UKK3 1724 aaKnown RBP23.13■■□□□ 1.29
ATL3-202ENST00000535789 PUS7Q96PZ0 661 aaKnown RBP23.13■■□□□ 1.29
ATL3-202ENST00000535789 ZRANB1Q9UGI0 708 aa23.13■■□□□ 1.29
ATL3-202ENST00000535789 EDC4Q6P2E9 1401 aaKnown RBP23.13■■□□□ 1.29
ATL3-202ENST00000535789 SEPT12Q8IYM1 358 aa23.12■■□□□ 1.29
ATL3-202ENST00000535789 CCDC9Q9Y3X0 531 aaKnown RBP23.12■■□□□ 1.29
ATL3-202ENST00000535789 TNS1Q9HBL0 1735 aaKnown RBP23.11■■□□□ 1.29
ATL3-202ENST00000535789 OVOS2A0A0J9YW53 1432 aa23.11■■□□□ 1.29
ATL3-202ENST00000535789 OVOS2Q6IE36 1432 aa23.11■■□□□ 1.29
ATL3-202ENST00000535789 TMC1Q8TDI8 760 aa23.11■■□□□ 1.29
ATL3-202ENST00000535789 USP31Q70CQ4 1352 aa23.11■■□□□ 1.29
ATL3-202ENST00000535789 SPATA31A1Q5TZJ5 1347 aa23.09■■□□□ 1.29
ATL3-202ENST00000535789 ABCC6O95255 1503 aa23.09■■□□□ 1.29
ATL3-202ENST00000535789 LRRC37A3O60309 1634 aa23.09■■□□□ 1.29
ATL3-202ENST00000535789 FAM98CQ17RN3 349 aaKnown RBP23.09■■□□□ 1.29
ATL3-202ENST00000535789 NINLQ9Y2I6 1382 aa23.09■■□□□ 1.29
ATL3-202ENST00000535789 NME9Q86XW9 330 aa23.08■■□□□ 1.29
ATL3-202ENST00000535789 STRN4Q9NRL3 753 aa23.08■■□□□ 1.29
ATL3-202ENST00000535789 AATKQ6ZMQ8 1374 aa23.08■■□□□ 1.29
ATL3-202ENST00000535789 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.07■■□□□ 1.28
ATL3-202ENST00000535789 RGPD1P0DJD0 1748 aa23.07■■□□□ 1.28
ATL3-202ENST00000535789 LARP1Q6PKG0 1096 aaKnown RBP23.06■■□□□ 1.28
ATL3-202ENST00000535789 ANKRD36BQ8N2N9 1353 aa23.05■■□□□ 1.28
ATL3-202ENST00000535789 ARHGEF25Q86VW2 580 aa23.04■■□□□ 1.28
ATL3-202ENST00000535789 RGPD2P0DJD1 1756 aa23.04■■□□□ 1.28
ATL3-202ENST00000535789 PEAK1Q9H792 1746 aa23.03■■□□□ 1.28
ATL3-202ENST00000535789 SOX12O15370 315 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms