RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ADGRB1	O14514	1584 aa		18.52	■□□□□ 0.56
CAPN1-223	ENST00000533079	EN1	Q05925	392 aa	Predicted RBP	18.51	■□□□□ 0.55
CAPN1-223	ENST00000533079	ITSN1	Q15811	1721 aa		18.51	■□□□□ 0.55
CAPN1-223	ENST00000533079	RREB1	Q92766	1687 aa		18.5	■□□□□ 0.55
CAPN1-223	ENST00000533079	PLEKHG5	O94827	1062 aa		18.5	■□□□□ 0.55
CAPN1-223	ENST00000533079	CFAP70	Q5T0N1	1121 aa		18.5	■□□□□ 0.55
CAPN1-223	ENST00000533079	PMFBP1	Q8TBY8	1022 aa		18.5	■□□□□ 0.55
CAPN1-223	ENST00000533079	PHRF1	Q9P1Y6	1649 aa	Known RBP	18.49	■□□□□ 0.55
CAPN1-223	ENST00000533079	R3HDM1	Q15032	1099 aa	Known RBP	18.49	■□□□□ 0.55
CAPN1-223	ENST00000533079	POGK	Q9P215	609 aa		18.49	■□□□□ 0.55
CAPN1-223	ENST00000533079	ATP7B	P35670	1465 aa		18.48	■□□□□ 0.55
CAPN1-223	ENST00000533079	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.48	■□□□□ 0.55
CAPN1-223	ENST00000533079	FAM196A	Q6ZSG2	479 aa		18.45	■□□□□ 0.54
CAPN1-223	ENST00000533079	PRDM11	Q9NQV5	511 aa		18.45	■□□□□ 0.54
CAPN1-223	ENST00000533079	SPATA31A1	Q5TZJ5	1347 aa		18.45	■□□□□ 0.54
CAPN1-223	ENST00000533079	NUP188	Q5SRE5	1749 aa		18.44	■□□□□ 0.54
CAPN1-223	ENST00000533079	EZH2	Q15910	746 aa	Known RBP	18.43	■□□□□ 0.54
CAPN1-223	ENST00000533079	CAMKK2	Q96RR4	588 aa		18.43	■□□□□ 0.54
CAPN1-223	ENST00000533079	PRR36	Q9H6K5	1346 aa		18.43	■□□□□ 0.54
CAPN1-223	ENST00000533079	FAM182B	Q5T319	152 aa		18.42	■□□□□ 0.54
CAPN1-223	ENST00000533079	KIAA0232	Q92628	1395 aa		18.42	■□□□□ 0.54
CAPN1-223	ENST00000533079	WASL	O00401	505 aa	Predicted RBP	18.41	■□□□□ 0.54
CAPN1-223	ENST00000533079	NGDN	Q8NEJ9	315 aa	Known RBP	18.41	■□□□□ 0.54
CAPN1-223	ENST00000533079	NRK	Q7Z2Y5	1582 aa		18.4	■□□□□ 0.54
CAPN1-223	ENST00000533079	TOPAZ1	Q8N9V7	1692 aa		18.4	■□□□□ 0.54
CAPN1-223	ENST00000533079	ARHGEF28	Q8N1W1	1705 aa	Known RBP	18.4	■□□□□ 0.54
CAPN1-223	ENST00000533079	TRIM37	O94972	964 aa		18.39	■□□□□ 0.53
CAPN1-223	ENST00000533079	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.39	■□□□□ 0.53
CAPN1-223	ENST00000533079	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.39	■□□□□ 0.53
CAPN1-223	ENST00000533079	RGPD3	A6NKT7	1758 aa	Predicted RBP	18.39	■□□□□ 0.53
CAPN1-223	ENST00000533079	RGPD4	Q7Z3J3	1758 aa		18.39	■□□□□ 0.53
CAPN1-223	ENST00000533079	PAK3	O75914	559 aa	Predicted RBP	18.38	■□□□□ 0.53
CAPN1-223	ENST00000533079	BARGIN	Q6ZT62	677 aa		18.38	■□□□□ 0.53
CAPN1-223	ENST00000533079	TRAK1	Q9UPV9	953 aa		18.38	■□□□□ 0.53
CAPN1-223	ENST00000533079	SSH2	Q76I76	1423 aa		18.38	■□□□□ 0.53
CAPN1-223	ENST00000533079	LMO7	Q8WWI1	1683 aa		18.38	■□□□□ 0.53
CAPN1-223	ENST00000533079	APBA3	O96018	575 aa		18.37	■□□□□ 0.53
CAPN1-223	ENST00000533079	PARP4	Q9UKK3	1724 aa	Known RBP	18.37	■□□□□ 0.53
CAPN1-223	ENST00000533079	STAC3	Q96MF2	364 aa		18.36	■□□□□ 0.53
CAPN1-223	ENST00000533079	NINL	Q9Y2I6	1382 aa		18.35	■□□□□ 0.53
CAPN1-223	ENST00000533079	C11orf95	C9JLR9	678 aa	Predicted RBP	18.35	■□□□□ 0.53
CAPN1-223	ENST00000533079	YY1	P25490	414 aa		18.35	■□□□□ 0.53
CAPN1-223	ENST00000533079	NBPF8	Q3BBV2	869 aa		18.35	■□□□□ 0.53
CAPN1-223	ENST00000533079	NBPF14	Q5TI25	921 aa		18.35	■□□□□ 0.53
CAPN1-223	ENST00000533079	POLR3A	O14802	1390 aa	Predicted RBP	18.34	■□□□□ 0.53
CAPN1-223	ENST00000533079	PDE3B	Q13370	1112 aa		18.34	■□□□□ 0.53
CAPN1-223	ENST00000533079	STRN4	Q9NRL3	753 aa		18.34	■□□□□ 0.53
CAPN1-223	ENST00000533079	CPD	O75976	1380 aa		18.33	■□□□□ 0.53
CAPN1-223	ENST00000533079	CHRNA2	Q15822	529 aa		18.32	■□□□□ 0.52
CAPN1-223	ENST00000533079	THRAP3	Q9Y2W1	955 aa	Known RBP	18.32	■□□□□ 0.52
CAPN1-223	ENST00000533079	CAMTA1	Q9Y6Y1	1673 aa		18.31	■□□□□ 0.52
CAPN1-223	ENST00000533079	DCAF8L1	A6NGE4	600 aa		18.3	■□□□□ 0.52
CAPN1-223	ENST00000533079	TCP11L2	Q8N4U5	519 aa		18.3	■□□□□ 0.52
CAPN1-223	ENST00000533079	NUDT16	Q96DE0	195 aa	Known RBP	18.3	■□□□□ 0.52
CAPN1-223	ENST00000533079	SPON1	Q9HCB6	807 aa		18.3	■□□□□ 0.52
CAPN1-223	ENST00000533079	USP19	O94966	1318 aa		18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	EVA1C	P58658	441 aa		18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	ZC3H6	P61129	1189 aa	Known RBP	18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	PPP1R1B	Q9UD71	204 aa	Predicted RBP	18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	OVOS2	A0A0G2JMS6	1433 aa		18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	OVOS2	A0A0J9YW53	1432 aa		18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	OVOS2	Q6IE36	1432 aa		18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	PEAK1	Q9H792	1746 aa		18.29	■□□□□ 0.52
CAPN1-223	ENST00000533079	USP35	Q9P2H5	1018 aa		18.28	■□□□□ 0.52
CAPN1-223	ENST00000533079	LRRC37A3	O60309	1634 aa		18.27	■□□□□ 0.52
CAPN1-223	ENST00000533079	COL5A2	P05997	1499 aa	Predicted RBP	18.27	■□□□□ 0.52
CAPN1-223	ENST00000533079	KCNQ2	O43526	872 aa		18.26	■□□□□ 0.51
CAPN1-223	ENST00000533079	CASZ1	Q86V15	1759 aa		18.26	■□□□□ 0.51
CAPN1-223	ENST00000533079	BRD4	O60885	1362 aa	Predicted RBP	18.26	■□□□□ 0.51
CAPN1-223	ENST00000533079	KIAA1210	Q9ULL0	1709 aa		18.26	■□□□□ 0.51
CAPN1-223	ENST00000533079	ACE	P12821	1306 aa		18.25	■□□□□ 0.51
CAPN1-223	ENST00000533079	CRB1	P82279	1406 aa		18.25	■□□□□ 0.51
CAPN1-223	ENST00000533079	LARP1	Q6PKG0	1096 aa	Known RBP	18.25	■□□□□ 0.51
CAPN1-223	ENST00000533079	DCAF11	Q8TEB1	546 aa		18.25	■□□□□ 0.51
CAPN1-223	ENST00000533079	CCDC61	Q9Y6R9	512 aa		18.25	■□□□□ 0.51
CAPN1-223	ENST00000533079	RAB3GAP2	Q9H2M9	1393 aa		18.24	■□□□□ 0.51
CAPN1-223	ENST00000533079	WNK3	Q9BYP7	1800 aa		18.23	■□□□□ 0.51
CAPN1-223	ENST00000533079	PLEKHG3	A1L390	1219 aa		18.23	■□□□□ 0.51
CAPN1-223	ENST00000533079	SBF2	Q86WG5	1849 aa		18.22	■□□□□ 0.51
CAPN1-223	ENST00000533079	NUTM2G	Q5VZR2	741 aa		18.22	■□□□□ 0.51
CAPN1-223	ENST00000533079	ABTB2	Q8N961	1025 aa		18.22	■□□□□ 0.51
CAPN1-223	ENST00000533079	CDK19	Q9BWU1	502 aa		18.22	■□□□□ 0.51
CAPN1-223	ENST00000533079	PLSCR1	O15162	318 aa		18.21	■□□□□ 0.51
CAPN1-223	ENST00000533079	KDM2A	Q9Y2K7	1162 aa		18.21	■□□□□ 0.51
CAPN1-223	ENST00000533079	SLIT3	O75094	1523 aa		18.2	■□□□□ 0.5
CAPN1-223	ENST00000533079	NLRP13	Q86W25	1043 aa		18.2	■□□□□ 0.5
CAPN1-223	ENST00000533079	BCL9	O00512	1426 aa		18.2	■□□□□ 0.5
CAPN1-223	ENST00000533079	GC	P02774	474 aa		18.19	■□□□□ 0.5
CAPN1-223	ENST00000533079	PPIP5K1	Q6PFW1	1433 aa		18.18	■□□□□ 0.5
CAPN1-223	ENST00000533079	AKAP12	Q02952	1782 aa		18.18	■□□□□ 0.5
CAPN1-223	ENST00000533079	AATK	Q6ZMQ8	1374 aa		18.17	■□□□□ 0.5
CAPN1-223	ENST00000533079	MYOM1	P52179	1685 aa		18.17	■□□□□ 0.5
CAPN1-223	ENST00000533079	QRICH2	Q9H0J4	1663 aa		18.16	■□□□□ 0.5
CAPN1-223	ENST00000533079	DDB1	Q16531	1140 aa		18.15	■□□□□ 0.5
CAPN1-223	ENST00000533079	BCL11B	Q9C0K0	894 aa	Predicted RBP	18.15	■□□□□ 0.5
CAPN1-223	ENST00000533079	ANO8	Q9HCE9	1232 aa	Predicted RBP	18.14	■□□□□ 0.49
CAPN1-223	ENST00000533079	USP6	P35125	1406 aa		18.14	■□□□□ 0.49
CAPN1-223	ENST00000533079	UTRN	P46939	3433 aa		18.13	■□□□□ 0.49
CAPN1-223	ENST00000533079	PIK3C2A	O00443	1686 aa		18.13	■□□□□ 0.49
CAPN1-223	ENST00000533079	CDCA7	Q9BWT1	371 aa	Predicted RBP	18.13	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms