RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 FNBP4Q8N3X1 1017 aaPredicted RBP21.78■■□□□ 1.08
CPSF1-210ENST00000532935 USP21Q9UK80 565 aa21.77■■□□□ 1.08
CPSF1-210ENST00000532935 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.77■■□□□ 1.08
CPSF1-210ENST00000532935 AKAP12Q02952 1782 aa21.76■■□□□ 1.07
CPSF1-210ENST00000532935 PLCH1Q4KWH8 1693 aa21.76■■□□□ 1.07
CPSF1-210ENST00000532935 RXRBP28702 533 aa21.76■■□□□ 1.07
CPSF1-210ENST00000532935 QTRT2Q9H974 415 aaKnown RBP21.76■■□□□ 1.07
CPSF1-210ENST00000532935 CABP1Q9NZU7 370 aa21.76■■□□□ 1.07
CPSF1-210ENST00000532935 PHRF1Q9P1Y6 1649 aaKnown RBP21.75■■□□□ 1.07
CPSF1-210ENST00000532935 NWD2Q9ULI1 1742 aa21.75■■□□□ 1.07
CPSF1-210ENST00000532935 BCL9LQ86UU0 1499 aa21.74■■□□□ 1.07
CPSF1-210ENST00000532935 ATAD2Q6PL18 1390 aa21.74■■□□□ 1.07
CPSF1-210ENST00000532935 SLIT2O94813 1529 aa21.73■■□□□ 1.07
CPSF1-210ENST00000532935 ATRNO75882 1429 aa21.72■■□□□ 1.07
CPSF1-210ENST00000532935 CDK12Q9NYV4 1490 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-210ENST00000532935 RBM6P78332 1123 aaKnown RBP21.71■■□□□ 1.07
CPSF1-210ENST00000532935 TRPC5Q9UL62 973 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-210ENST00000532935 BRD4O60885 1362 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-210ENST00000532935 USP6P35125 1406 aa21.71■■□□□ 1.07
CPSF1-210ENST00000532935 COL14A1Q05707 1796 aaKnown RBP21.7■■□□□ 1.06
CPSF1-210ENST00000532935 ST20-MTHFSA0A0A6YYL1 179 aa21.7■■□□□ 1.06
CPSF1-210ENST00000532935 NUTM2GQ5VZR2 741 aa21.69■■□□□ 1.06
CPSF1-210ENST00000532935 USP47Q96K76 1375 aa21.69■■□□□ 1.06
CPSF1-210ENST00000532935 ABTB2Q8N961 1025 aa21.68■■□□□ 1.06
CPSF1-210ENST00000532935 TESK2Q96S53 571 aa21.68■■□□□ 1.06
CPSF1-210ENST00000532935 MON2Q7Z3U7 1717 aa21.68■■□□□ 1.06
CPSF1-210ENST00000532935 NRAPQ86VF7 1730 aa21.67■■□□□ 1.06
CPSF1-210ENST00000532935 NRKQ7Z2Y5 1582 aa21.67■■□□□ 1.06
CPSF1-210ENST00000532935 UNC5CLQ8IV45 518 aa21.67■■□□□ 1.06
CPSF1-210ENST00000532935 PIK3C2AO00443 1686 aa21.66■■□□□ 1.06
CPSF1-210ENST00000532935 SSH2Q76I76 1423 aa21.66■■□□□ 1.06
CPSF1-210ENST00000532935 FAM83GA6ND36 823 aa21.66■■□□□ 1.06
CPSF1-210ENST00000532935 RGS12O14924 1447 aa21.65■■□□□ 1.06
CPSF1-210ENST00000532935 CPSF1Q10570 1443 aaKnown RBP21.65■■□□□ 1.06
CPSF1-210ENST00000532935 ZNF692Q9BU19 519 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-210ENST00000532935 SLC24A1O60721 1099 aa21.64■■□□□ 1.05
CPSF1-210ENST00000532935 PUS7Q96PZ0 661 aaKnown RBP21.64■■□□□ 1.05
CPSF1-210ENST00000532935 GLI3P10071 1580 aa21.62■■□□□ 1.05
CPSF1-210ENST00000532935 USP19O94966 1318 aa21.62■■□□□ 1.05
CPSF1-210ENST00000532935 NLRP13Q86W25 1043 aa21.62■■□□□ 1.05
CPSF1-210ENST00000532935 KTN1Q86UP2 1357 aaKnown RBP21.61■■□□□ 1.05
CPSF1-210ENST00000532935 CD163L1Q9NR16 1453 aa21.61■■□□□ 1.05
CPSF1-210ENST00000532935 TMC1Q8TDI8 760 aa21.61■■□□□ 1.05
CPSF1-210ENST00000532935 GJD4Q96KN9 370 aaPredicted RBP21.61■■□□□ 1.05
CPSF1-210ENST00000532935 KIAA0232Q92628 1395 aa21.61■■□□□ 1.05
CPSF1-210ENST00000532935 TTC21BQ7Z4L5 1316 aa21.6■■□□□ 1.05
CPSF1-210ENST00000532935 PRDM11Q9NQV5 511 aa21.6■■□□□ 1.05
CPSF1-210ENST00000532935 BTG4Q9NY30 223 aa21.6■■□□□ 1.05
CPSF1-210ENST00000532935 ZC3H6P61129 1189 aaKnown RBP21.59■■□□□ 1.05
CPSF1-210ENST00000532935 SLC12A5Q9H2X9 1139 aa21.59■■□□□ 1.05
CPSF1-210ENST00000532935 SLIT3O75094 1523 aa21.59■■□□□ 1.05
CPSF1-210ENST00000532935 NLRP6P59044 892 aa21.58■■□□□ 1.05
CPSF1-210ENST00000532935 VPS72Q15906 364 aa21.58■■□□□ 1.05
CPSF1-210ENST00000532935 TTC21AQ8NDW8 1320 aa21.57■■□□□ 1.04
CPSF1-210ENST00000532935 TMF1P82094 1093 aa21.57■■□□□ 1.04
CPSF1-210ENST00000532935 GCP02774 474 aa21.56■■□□□ 1.04
CPSF1-210ENST00000532935 CHRNA2Q15822 529 aa21.56■■□□□ 1.04
CPSF1-210ENST00000532935 HDGFL2Q7Z4V5 671 aaPredicted RBP21.56■■□□□ 1.04
CPSF1-210ENST00000532935 NINLQ9Y2I6 1382 aa21.56■■□□□ 1.04
CPSF1-210ENST00000532935 BRWD3Q6RI45 1802 aa21.55■■□□□ 1.04
CPSF1-210ENST00000532935 CPDO75976 1380 aa21.55■■□□□ 1.04
CPSF1-210ENST00000532935 USP54Q70EL1 1684 aa21.55■■□□□ 1.04
CPSF1-210ENST00000532935 LMO7Q8WWI1 1683 aa21.55■■□□□ 1.04
CPSF1-210ENST00000532935 A0A1W2PP64 1363 aa21.54■■□□□ 1.04
CPSF1-210ENST00000532935 TERF2IPQ9NYB0 399 aa21.54■■□□□ 1.04
CPSF1-210ENST00000532935 CCDC9Q9Y3X0 531 aaKnown RBP21.54■■□□□ 1.04
CPSF1-210ENST00000532935 EDC4Q6P2E9 1401 aaKnown RBP21.53■■□□□ 1.04
CPSF1-210ENST00000532935 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.52■■□□□ 1.04
CPSF1-210ENST00000532935 EP400Q96L91 3159 aa21.51■■□□□ 1.03
CPSF1-210ENST00000532935 CAMTA1Q9Y6Y1 1673 aa21.5■■□□□ 1.03
CPSF1-210ENST00000532935 CDCA8Q53HL2 280 aa21.5■■□□□ 1.03
CPSF1-210ENST00000532935 MYOM1P52179 1685 aa21.5■■□□□ 1.03
CPSF1-210ENST00000532935 COL18A1P39060 1754 aa21.49■■□□□ 1.03
CPSF1-210ENST00000532935 RGPD5Q99666 1765 aa21.48■■□□□ 1.03
CPSF1-210ENST00000532935 UPF1Q92900 1129 aaKnown RBP eCLIP21.48■■□□□ 1.03
CPSF1-210ENST00000532935 NFAT5O94916 1531 aa21.48■■□□□ 1.03
CPSF1-210ENST00000532935 SPATA31A5Q5VU36 1347 aa21.48■■□□□ 1.03
CPSF1-210ENST00000532935 SPATA31A7Q8IWB4 1347 aa21.48■■□□□ 1.03
CPSF1-210ENST00000532935 USP31Q70CQ4 1352 aa21.48■■□□□ 1.03
CPSF1-210ENST00000532935 NME9Q86XW9 330 aa21.47■■□□□ 1.03
CPSF1-210ENST00000532935 KCNH5Q8NCM2 988 aa21.47■■□□□ 1.03
CPSF1-210ENST00000532935 STRN4Q9NRL3 753 aa21.47■■□□□ 1.03
CPSF1-210ENST00000532935 ZRANB1Q9UGI0 708 aa21.47■■□□□ 1.03
CPSF1-210ENST00000532935 ANKRD36BQ8N2N9 1353 aa21.47■■□□□ 1.03
CPSF1-210ENST00000532935 ZBTB7CA1YPR0 619 aa21.46■■□□□ 1.03
CPSF1-210ENST00000532935 ONECUT3O60422 494 aaPredicted RBP21.46■■□□□ 1.03
CPSF1-210ENST00000532935 EIF4G2P78344 907 aaKnown RBP eCLIP21.46■■□□□ 1.03
CPSF1-210ENST00000532935 LTN1O94822 1766 aa21.46■■□□□ 1.03
CPSF1-210ENST00000532935 EVA1CP58658 441 aa21.45■■□□□ 1.02
CPSF1-210ENST00000532935 SEPT12Q8IYM1 358 aa21.45■■□□□ 1.02
CPSF1-210ENST00000532935 AATKQ6ZMQ8 1374 aa21.45■■□□□ 1.02
CPSF1-210ENST00000532935 SOX12O15370 315 aa21.44■■□□□ 1.02
CPSF1-210ENST00000532935 FAM98CQ17RN3 349 aaKnown RBP21.44■■□□□ 1.02
CPSF1-210ENST00000532935 COL5A2P05997 1499 aaPredicted RBP21.44■■□□□ 1.02
CPSF1-210ENST00000532935 THSD7AQ9UPZ6 1657 aa21.44■■□□□ 1.02
CPSF1-210ENST00000532935 HSPA5P11021 654 aaKnown RBP21.43■■□□□ 1.02
CPSF1-210ENST00000532935 SPATA31A1Q5TZJ5 1347 aa21.43■■□□□ 1.02
CPSF1-210ENST00000532935 OVOS2A0A0J9YW53 1432 aa21.42■■□□□ 1.02
CPSF1-210ENST00000532935 OVOS2Q6IE36 1432 aa21.42■■□□□ 1.02
CPSF1-210ENST00000532935 ARHGEF25Q86VW2 580 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms