RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 PPLO60437 1756 aa16■□□□□ 0.15
USF1-208ENST00000528768 GPRASP1Q5JY77 1395 aa16■□□□□ 0.15
USF1-208ENST00000528768 FMN2Q9NZ56 1722 aa15.99■□□□□ 0.15
USF1-208ENST00000528768 NUTM2FA1L443 756 aa15.99■□□□□ 0.15
USF1-208ENST00000528768 DCAF8L1A6NGE4 600 aa15.99■□□□□ 0.15
USF1-208ENST00000528768 POLR3GLQ9BT43 218 aa15.99■□□□□ 0.15
USF1-208ENST00000528768 KTN1Q86UP2 1357 aaKnown RBP15.99■□□□□ 0.15
USF1-208ENST00000528768 PARD3Q8TEW0 1356 aa15.99■□□□□ 0.15
USF1-208ENST00000528768 TRPM1Q7Z4N2 1603 aa15.98■□□□□ 0.15
USF1-208ENST00000528768 FAM98CQ17RN3 349 aaKnown RBP15.98■□□□□ 0.15
USF1-208ENST00000528768 PHF8Q9UPP1 1060 aa15.98■□□□□ 0.15
USF1-208ENST00000528768 ADGRB2O60241 1585 aa15.97■□□□□ 0.15
USF1-208ENST00000528768 ST20-MTHFSA0A0A6YYL1 179 aa15.97■□□□□ 0.15
USF1-208ENST00000528768 WAPLQ7Z5K2 1190 aa15.97■□□□□ 0.15
USF1-208ENST00000528768 SIRT1Q96EB6 747 aa15.97■□□□□ 0.15
USF1-208ENST00000528768 MRS2Q9HD23 443 aa15.97■□□□□ 0.15
USF1-208ENST00000528768 FAM83GA6ND36 823 aa15.96■□□□□ 0.15
USF1-208ENST00000528768 CABLES1Q8TDN4 633 aa15.96■□□□□ 0.15
USF1-208ENST00000528768 KNDC1Q76NI1 1749 aa15.96■□□□□ 0.15
USF1-208ENST00000528768 HNRNPUQ00839 825 aaKnown RBP eCLIP15.95■□□□□ 0.14
USF1-208ENST00000528768 STK26Q9P289 416 aa15.95■□□□□ 0.14
USF1-208ENST00000528768 SLC24A1O60721 1099 aa15.94■□□□□ 0.14
USF1-208ENST00000528768 LMOD2Q6P5Q4 547 aa15.94■□□□□ 0.14
USF1-208ENST00000528768 NRXN1Q9ULB1 1477 aa15.94■□□□□ 0.14
USF1-208ENST00000528768 ABCA3Q99758 1704 aa15.94■□□□□ 0.14
USF1-208ENST00000528768 FAM196AQ6ZSG2 479 aa15.93■□□□□ 0.14
USF1-208ENST00000528768 BTG4Q9NY30 223 aa15.93■□□□□ 0.14
USF1-208ENST00000528768 NRAPQ86VF7 1730 aa15.93■□□□□ 0.14
USF1-208ENST00000528768 CAMKK2Q96RR4 588 aa15.92■□□□□ 0.14
USF1-208ENST00000528768 SUPT16HQ9Y5B9 1047 aaKnown RBP15.92■□□□□ 0.14
USF1-208ENST00000528768 COL14A1Q05707 1796 aaKnown RBP15.92■□□□□ 0.14
USF1-208ENST00000528768 SPATA31A5Q5VU36 1347 aa15.92■□□□□ 0.14
USF1-208ENST00000528768 SPATA31A7Q8IWB4 1347 aa15.92■□□□□ 0.14
USF1-208ENST00000528768 TMF1P82094 1093 aa15.91■□□□□ 0.14
USF1-208ENST00000528768 RALBP1Q15311 655 aa15.91■□□□□ 0.14
USF1-208ENST00000528768 EZH2Q15910 746 aaKnown RBP15.91■□□□□ 0.14
USF1-208ENST00000528768 NBPF14Q5TI25 921 aa15.91■□□□□ 0.14
USF1-208ENST00000528768 ADGRF5Q8IZF2 1346 aa15.91■□□□□ 0.14
USF1-208ENST00000528768 TNS1Q9HBL0 1735 aaKnown RBP15.91■□□□□ 0.14
USF1-208ENST00000528768 PLEKHH1Q9ULM0 1364 aa15.9■□□□□ 0.14
USF1-208ENST00000528768 CDCA8Q53HL2 280 aa15.9■□□□□ 0.14
USF1-208ENST00000528768 YTHDC2Q9H6S0 1430 aaKnown RBP15.9■□□□□ 0.14
USF1-208ENST00000528768 NINLQ9Y2I6 1382 aa15.89■□□□□ 0.13
USF1-208ENST00000528768 THSD7AQ9UPZ6 1657 aa15.89■□□□□ 0.13
USF1-208ENST00000528768 IFT172Q9UG01 1749 aa15.88■□□□□ 0.13
USF1-208ENST00000528768 ANKARQ7Z5J8 1434 aa15.88■□□□□ 0.13
USF1-208ENST00000528768 SPON1Q9HCB6 807 aa15.88■□□□□ 0.13
USF1-208ENST00000528768 PPP1R1BQ9UD71 204 aaPredicted RBP15.88■□□□□ 0.13
USF1-208ENST00000528768 EIF3AQ14152 1382 aaKnown RBP15.87■□□□□ 0.13
USF1-208ENST00000528768 PLEKHG5O94827 1062 aa15.87■□□□□ 0.13
USF1-208ENST00000528768 APBA3O96018 575 aa15.87■□□□□ 0.13
USF1-208ENST00000528768 NBPF1Q3BBV0 1214 aa15.87■□□□□ 0.13
USF1-208ENST00000528768 PIK3C2GO75747 1445 aa15.86■□□□□ 0.13
USF1-208ENST00000528768 FAM182BQ5T319 152 aa15.86■□□□□ 0.13
USF1-208ENST00000528768 TMEM132EQ6IEE7 984 aa15.86■□□□□ 0.13
USF1-208ENST00000528768 FAM9BQ8IZU0 186 aa15.86■□□□□ 0.13
USF1-208ENST00000528768 TRIM37O94972 964 aa15.85■□□□□ 0.13
USF1-208ENST00000528768 RGPD8O14715 1765 aaPredicted RBP15.85■□□□□ 0.13
USF1-208ENST00000528768 TMC1Q8TDI8 760 aa15.84■□□□□ 0.13
USF1-208ENST00000528768 ZBED9Q6R2W3 1325 aa15.84■□□□□ 0.13
USF1-208ENST00000528768 KCNQ2O43526 872 aa15.83■□□□□ 0.12
USF1-208ENST00000528768 PRDM11Q9NQV5 511 aa15.83■□□□□ 0.12
USF1-208ENST00000528768 SPATA31A1Q5TZJ5 1347 aa15.83■□□□□ 0.12
USF1-208ENST00000528768 MYBBP1AQ9BQG0 1328 aaKnown RBP15.83■□□□□ 0.12
USF1-208ENST00000528768 BRD4O60885 1362 aaPredicted RBP15.83■□□□□ 0.12
USF1-208ENST00000528768 RREB1Q92766 1687 aa15.83■□□□□ 0.12
USF1-208ENST00000528768 KIAA1210Q9ULL0 1709 aa15.82■□□□□ 0.12
USF1-208ENST00000528768 FKBP8Q14318 412 aa15.82■□□□□ 0.12
USF1-208ENST00000528768 PDE3BQ13370 1112 aa15.81■□□□□ 0.12
USF1-208ENST00000528768 PMFBP1Q8TBY8 1022 aa15.81■□□□□ 0.12
USF1-208ENST00000528768 ALS2Q96Q42 1657 aa15.81■□□□□ 0.12
USF1-208ENST00000528768 C14orf93Q9H972 538 aaKnown RBP15.81■□□□□ 0.12
USF1-208ENST00000528768 TRPM3Q9HCF6 1732 aaPredicted RBP15.81■□□□□ 0.12
USF1-208ENST00000528768 TESK2Q96S53 571 aa15.8■□□□□ 0.12
USF1-208ENST00000528768 CCDC184Q52MB2 194 aa15.79■□□□□ 0.12
USF1-208ENST00000528768 ERICH6BQ5W0A0 696 aa15.79■□□□□ 0.12
USF1-208ENST00000528768 BARGINQ6ZT62 677 aa15.79■□□□□ 0.12
USF1-208ENST00000528768 NUP188Q5SRE5 1749 aa15.78■□□□□ 0.12
USF1-208ENST00000528768 PRAM1Q96QH2 718 aa15.78■□□□□ 0.12
USF1-208ENST00000528768 POGKQ9P215 609 aa15.78■□□□□ 0.12
USF1-208ENST00000528768 DLC1Q96QB1 1528 aa15.78■□□□□ 0.12
USF1-208ENST00000528768 NLRP13Q86W25 1043 aa15.77■□□□□ 0.12
USF1-208ENST00000528768 CRYBG1Q9Y4K1 1723 aa15.74■□□□□ 0.11
USF1-208ENST00000528768 CNGB1Q14028 1251 aaPredicted RBP15.74■□□□□ 0.11
USF1-208ENST00000528768 ZNF784Q8NCA9 323 aaPredicted RBP15.74■□□□□ 0.11
USF1-208ENST00000528768 NGDNQ8NEJ9 315 aaKnown RBP15.74■□□□□ 0.11
USF1-208ENST00000528768 PNISRQ8TF01 805 aaKnown RBP15.74■□□□□ 0.11
USF1-208ENST00000528768 THRAP3Q9Y2W1 955 aaKnown RBP15.74■□□□□ 0.11
USF1-208ENST00000528768 KIAA0232Q92628 1395 aa15.74■□□□□ 0.11
USF1-208ENST00000528768 PAK3O75914 559 aaPredicted RBP15.73■□□□□ 0.11
USF1-208ENST00000528768 EVA1CP58658 441 aa15.73■□□□□ 0.11
USF1-208ENST00000528768 SAFB2Q14151 953 aaKnown RBP eCLIP15.73■□□□□ 0.11
USF1-208ENST00000528768 STRN4Q9NRL3 753 aa15.73■□□□□ 0.11
USF1-208ENST00000528768 IFFO2Q5TF58 517 aa15.72■□□□□ 0.11
USF1-208ENST00000528768 TCP11L2Q8N4U5 519 aa15.72■□□□□ 0.11
USF1-208ENST00000528768 PANK3Q9H999 370 aa15.72■□□□□ 0.11
USF1-208ENST00000528768 TULP4Q9NRJ4 1543 aa15.72■□□□□ 0.11
USF1-208ENST00000528768 SENP3-EIF4A1A0A087X0R7 540 aa15.71■□□□□ 0.11
USF1-208ENST00000528768 PER1O15534 1290 aaPredicted RBP15.71■□□□□ 0.11
USF1-208ENST00000528768 CFAP70Q5T0N1 1121 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms