RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 RGPD1P0DJD0 1748 aa21.74■■□□□ 1.07
CSTF3-204ENST00000524556 SPATA31A5Q5VU36 1347 aa21.74■■□□□ 1.07
CSTF3-204ENST00000524556 SPATA31A7Q8IWB4 1347 aa21.74■■□□□ 1.07
CSTF3-204ENST00000524556 CRYBG1Q9Y4K1 1723 aa21.73■■□□□ 1.07
CSTF3-204ENST00000524556 HRCP23327 699 aa21.73■■□□□ 1.07
CSTF3-204ENST00000524556 TULP4Q9NRJ4 1543 aa21.73■■□□□ 1.07
CSTF3-204ENST00000524556 WASLO00401 505 aaPredicted RBP21.72■■□□□ 1.07
CSTF3-204ENST00000524556 EN1Q05925 392 aaPredicted RBP21.71■■□□□ 1.07
CSTF3-204ENST00000524556 FAM182BQ5T319 152 aa21.7■■□□□ 1.06
CSTF3-204ENST00000524556 NGDNQ8NEJ9 315 aaKnown RBP21.7■■□□□ 1.06
CSTF3-204ENST00000524556 THSD7AQ9UPZ6 1657 aa21.69■■□□□ 1.06
CSTF3-204ENST00000524556 PAK3O75914 559 aaPredicted RBP21.69■■□□□ 1.06
CSTF3-204ENST00000524556 PRDM11Q9NQV5 511 aa21.68■■□□□ 1.06
CSTF3-204ENST00000524556 KDM2AQ9Y2K7 1162 aa21.68■■□□□ 1.06
CSTF3-204ENST00000524556 DISP2A7MBM2 1401 aa21.67■■□□□ 1.06
CSTF3-204ENST00000524556 TNS1Q9HBL0 1735 aaKnown RBP21.66■■□□□ 1.06
CSTF3-204ENST00000524556 DCAF11Q8TEB1 546 aa21.66■■□□□ 1.06
CSTF3-204ENST00000524556 RAB3GAP2Q9H2M9 1393 aa21.65■■□□□ 1.06
CSTF3-204ENST00000524556 ITSN1Q15811 1721 aa21.65■■□□□ 1.06
CSTF3-204ENST00000524556 SPATA31A1Q5TZJ5 1347 aa21.64■■□□□ 1.05
CSTF3-204ENST00000524556 R3HDM1Q15032 1099 aaKnown RBP21.64■■□□□ 1.05
CSTF3-204ENST00000524556 STAC3Q96MF2 364 aa21.64■■□□□ 1.05
CSTF3-204ENST00000524556 KIAA0232Q92628 1395 aa21.63■■□□□ 1.05
CSTF3-204ENST00000524556 NUDT16Q96DE0 195 aaKnown RBP21.63■■□□□ 1.05
CSTF3-204ENST00000524556 EZH2Q15910 746 aaKnown RBP21.62■■□□□ 1.05
CSTF3-204ENST00000524556 ARHGEF28Q8N1W1 1705 aaKnown RBP21.62■■□□□ 1.05
CSTF3-204ENST00000524556 ATP7BP35670 1465 aa21.61■■□□□ 1.05
CSTF3-204ENST00000524556 CHRNA2Q15822 529 aa21.61■■□□□ 1.05
CSTF3-204ENST00000524556 FAM196AQ6ZSG2 479 aa21.61■■□□□ 1.05
CSTF3-204ENST00000524556 PHRF1Q9P1Y6 1649 aaKnown RBP21.61■■□□□ 1.05
CSTF3-204ENST00000524556 CAMKK2Q96RR4 588 aa21.6■■□□□ 1.05
CSTF3-204ENST00000524556 STRN4Q9NRL3 753 aa21.6■■□□□ 1.05
CSTF3-204ENST00000524556 TRIM37O94972 964 aa21.59■■□□□ 1.05
CSTF3-204ENST00000524556 ZC3H6P61129 1189 aaKnown RBP21.58■■□□□ 1.05
CSTF3-204ENST00000524556 CDK19Q9BWU1 502 aa21.57■■□□□ 1.04
CSTF3-204ENST00000524556 NUTM2GQ5VZR2 741 aa21.56■■□□□ 1.04
CSTF3-204ENST00000524556 APBA3O96018 575 aa21.55■■□□□ 1.04
CSTF3-204ENST00000524556 EVA1CP58658 441 aa21.55■■□□□ 1.04
CSTF3-204ENST00000524556 BARGINQ6ZT62 677 aa21.55■■□□□ 1.04
CSTF3-204ENST00000524556 POLR3AO14802 1390 aaPredicted RBP21.55■■□□□ 1.04
CSTF3-204ENST00000524556 PARD3Q8TEW0 1356 aa21.55■■□□□ 1.04
CSTF3-204ENST00000524556 NBPF8Q3BBV2 869 aa21.54■■□□□ 1.04
CSTF3-204ENST00000524556 USP35Q9P2H5 1018 aa21.54■■□□□ 1.04
CSTF3-204ENST00000524556 ACEP12821 1306 aa21.54■■□□□ 1.04
CSTF3-204ENST00000524556 TOPAZ1Q8N9V7 1692 aa21.53■■□□□ 1.04
CSTF3-204ENST00000524556 CCDC61Q9Y6R9 512 aa21.53■■□□□ 1.04
CSTF3-204ENST00000524556 SSH2Q76I76 1423 aa21.53■■□□□ 1.04
CSTF3-204ENST00000524556 PLEKHG3A1L390 1219 aa21.52■■□□□ 1.04
CSTF3-204ENST00000524556 PDE3BQ13370 1112 aa21.52■■□□□ 1.04
CSTF3-204ENST00000524556 CAMTA1Q9Y6Y1 1673 aa21.51■■□□□ 1.03
CSTF3-204ENST00000524556 RREB1Q92766 1687 aa21.5■■□□□ 1.03
CSTF3-204ENST00000524556 NRKQ7Z2Y5 1582 aa21.5■■□□□ 1.03
CSTF3-204ENST00000524556 LARP1Q6PKG0 1096 aaKnown RBP21.5■■□□□ 1.03
CSTF3-204ENST00000524556 ABTB2Q8N961 1025 aa21.5■■□□□ 1.03
CSTF3-204ENST00000524556 TCP11L2Q8N4U5 519 aa21.49■■□□□ 1.03
CSTF3-204ENST00000524556 LMO7Q8WWI1 1683 aa21.49■■□□□ 1.03
CSTF3-204ENST00000524556 CPDO75976 1380 aa21.48■■□□□ 1.03
CSTF3-204ENST00000524556 NUP188Q5SRE5 1749 aa21.48■■□□□ 1.03
CSTF3-204ENST00000524556 KIAA1210Q9ULL0 1709 aa21.47■■□□□ 1.03
CSTF3-204ENST00000524556 USP19O94966 1318 aa21.47■■□□□ 1.03
CSTF3-204ENST00000524556 NBPF14Q5TI25 921 aa21.46■■□□□ 1.03
CSTF3-204ENST00000524556 THRAP3Q9Y2W1 955 aaKnown RBP21.46■■□□□ 1.03
CSTF3-204ENST00000524556 NLRP13Q86W25 1043 aa21.44■■□□□ 1.02
CSTF3-204ENST00000524556 GCP02774 474 aa21.43■■□□□ 1.02
CSTF3-204ENST00000524556 PARP4Q9UKK3 1724 aaKnown RBP21.43■■□□□ 1.02
CSTF3-204ENST00000524556 NBPF1Q3BBV0 1214 aa21.41■■□□□ 1.02
CSTF3-204ENST00000524556 COL5A2P05997 1499 aaPredicted RBP21.4■■□□□ 1.02
CSTF3-204ENST00000524556 PPIP5K1Q6PFW1 1433 aa21.4■■□□□ 1.02
CSTF3-204ENST00000524556 C11orf95C9JLR9 678 aaPredicted RBP21.4■■□□□ 1.02
CSTF3-204ENST00000524556 SRPK2P78362 688 aaKnown RBP21.39■■□□□ 1.01
CSTF3-204ENST00000524556 BRD4O60885 1362 aaPredicted RBP21.38■■□□□ 1.01
CSTF3-204ENST00000524556 CRB1P82279 1406 aa21.38■■□□□ 1.01
CSTF3-204ENST00000524556 SBF2Q86WG5 1849 aa21.37■■□□□ 1.01
CSTF3-204ENST00000524556 CABP2Q9NPB3 220 aa21.37■■□□□ 1.01
CSTF3-204ENST00000524556 PEAK1Q9H792 1746 aa21.37■■□□□ 1.01
CSTF3-204ENST00000524556 CENPJQ9HC77 1338 aaPredicted RBP21.36■■□□□ 1.01
CSTF3-204ENST00000524556 SPON1Q9HCB6 807 aa21.36■■□□□ 1.01
CSTF3-204ENST00000524556 KCNQ2O43526 872 aa21.35■■□□□ 1.01
CSTF3-204ENST00000524556 AATKQ6ZMQ8 1374 aa21.35■■□□□ 1.01
CSTF3-204ENST00000524556 RGPD3A6NKT7 1758 aaPredicted RBP21.34■■□□□ 1.01
CSTF3-204ENST00000524556 RGPD4Q7Z3J3 1758 aa21.34■■□□□ 1.01
CSTF3-204ENST00000524556 YY1P25490 414 aa21.34■■□□□ 1.01
CSTF3-204ENST00000524556 NLRP6P59044 892 aa21.34■■□□□ 1.01
CSTF3-204ENST00000524556 PPP1R1BQ9UD71 204 aaPredicted RBP21.34■■□□□ 1.01
CSTF3-204ENST00000524556 OVOS2A0A0G2JMS6 1433 aa21.34■■□□□ 1.01
CSTF3-204ENST00000524556 OVOS2A0A0J9YW53 1432 aa21.34■■□□□ 1.01
CSTF3-204ENST00000524556 OVOS2Q6IE36 1432 aa21.34■■□□□ 1.01
CSTF3-204ENST00000524556 ZBTB7CA1YPR0 619 aa21.33■■□□□ 1.01
CSTF3-204ENST00000524556 PLSCR1O15162 318 aa21.33■■□□□ 1.01
CSTF3-204ENST00000524556 CABP1Q9NZU7 370 aa21.33■■□□□ 1.01
CSTF3-204ENST00000524556 USP6P35125 1406 aa21.32■■□□□ 1
CSTF3-204ENST00000524556 QRICH2Q9H0J4 1663 aa21.32■■□□□ 1
CSTF3-204ENST00000524556 SLIT3O75094 1523 aa21.32■■□□□ 1
CSTF3-204ENST00000524556 COL18A1P39060 1754 aa21.32■■□□□ 1
CSTF3-204ENST00000524556 LRRC37A3O60309 1634 aa21.31■■□□□ 1
CSTF3-204ENST00000524556 DDB1Q16531 1140 aa21.31■■□□□ 1
CSTF3-204ENST00000524556 NINLQ9Y2I6 1382 aa21.29■■□□□ 1
CSTF3-204ENST00000524556 TOM1L2Q6ZVM7 507 aa21.29■■□□□ 1
CSTF3-204ENST00000524556 BCL11BQ9C0K0 894 aaPredicted RBP21.29■■□□□ 1
CSTF3-204ENST00000524556 WNK3Q9BYP7 1800 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms