RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 FAM196AQ6ZSG2 479 aa14.05□□□□□ -0.16
NUP54-211ENST00000512151 RPGRIP1LQ68CZ1 1315 aa14.04□□□□□ -0.16
NUP54-211ENST00000512151 NRXN1Q9ULB1 1477 aa14.04□□□□□ -0.16
NUP54-211ENST00000512151 ADGRF5Q8IZF2 1346 aa14.04□□□□□ -0.16
NUP54-211ENST00000512151 NBPF8Q3BBV2 869 aa14.03□□□□□ -0.16
NUP54-211ENST00000512151 NBPF14Q5TI25 921 aa14.03□□□□□ -0.16
NUP54-211ENST00000512151 TMEM132EQ6IEE7 984 aa14.03□□□□□ -0.16
NUP54-211ENST00000512151 ABCC11Q96J66 1382 aa14.02□□□□□ -0.16
NUP54-211ENST00000512151 IFT172Q9UG01 1749 aa14.02□□□□□ -0.16
NUP54-211ENST00000512151 KNDC1Q76NI1 1749 aa14.02□□□□□ -0.17
NUP54-211ENST00000512151 ITGAEP38570 1179 aa14.01□□□□□ -0.17
NUP54-211ENST00000512151 TRPM3Q9HCF6 1732 aaPredicted RBP14.01□□□□□ -0.17
NUP54-211ENST00000512151 SPATA31A1Q5TZJ5 1347 aa14.01□□□□□ -0.17
NUP54-211ENST00000512151 NRKQ7Z2Y5 1582 aa14.01□□□□□ -0.17
NUP54-211ENST00000512151 RRBP1Q9P2E9 1410 aaKnown RBP14□□□□□ -0.17
NUP54-211ENST00000512151 PMFBP1Q8TBY8 1022 aa13.99□□□□□ -0.17
NUP54-211ENST00000512151 PDGFDQ9GZP0 370 aaPredicted RBP13.99□□□□□ -0.17
NUP54-211ENST00000512151 ALS2Q96Q42 1657 aa13.99□□□□□ -0.17
NUP54-211ENST00000512151 CASZ1Q86V15 1759 aa13.99□□□□□ -0.17
NUP54-211ENST00000512151 CRYBG1Q9Y4K1 1723 aa13.98□□□□□ -0.17
NUP54-211ENST00000512151 MYOM1P52179 1685 aa13.98□□□□□ -0.17
NUP54-211ENST00000512151 ANO8Q9HCE9 1232 aaPredicted RBP13.97□□□□□ -0.17
NUP54-211ENST00000512151 YTHDC2Q9H6S0 1430 aaKnown RBP13.96□□□□□ -0.17
NUP54-211ENST00000512151 PTGER2P43116 358 aa13.96□□□□□ -0.18
NUP54-211ENST00000512151 PRDM11Q9NQV5 511 aa13.96□□□□□ -0.18
NUP54-211ENST00000512151 CHD4Q14839 1912 aa13.95□□□□□ -0.18
NUP54-211ENST00000512151 CHRNA2Q15822 529 aa13.95□□□□□ -0.18
NUP54-211ENST00000512151 STRN4Q9NRL3 753 aa13.95□□□□□ -0.18
NUP54-211ENST00000512151 ZBTB7AO95365 584 aa13.94□□□□□ -0.18
NUP54-211ENST00000512151 KIAA0232Q92628 1395 aa13.93□□□□□ -0.18
NUP54-211ENST00000512151 UTRNP46939 3433 aa13.93□□□□□ -0.18
NUP54-211ENST00000512151 USP35Q9P2H5 1018 aa13.93□□□□□ -0.18
NUP54-211ENST00000512151 PDE3BQ13370 1112 aa13.92□□□□□ -0.18
NUP54-211ENST00000512151 SAFB2Q14151 953 aaKnown RBP eCLIP13.92□□□□□ -0.18
NUP54-211ENST00000512151 SIRT1Q96EB6 747 aa13.92□□□□□ -0.18
NUP54-211ENST00000512151 FHDC1Q9C0D6 1143 aaPredicted RBP13.92□□□□□ -0.18
NUP54-211ENST00000512151 BARGINQ6ZT62 677 aa13.91□□□□□ -0.18
NUP54-211ENST00000512151 SYT17Q9BSW7 474 aa13.91□□□□□ -0.18
NUP54-211ENST00000512151 ATF5Q9Y2D1 282 aaPredicted RBP13.91□□□□□ -0.18
NUP54-211ENST00000512151 PIK3C2GO75747 1445 aa13.91□□□□□ -0.18
NUP54-211ENST00000512151 ACIN1Q9UKV3 1341 aaKnown RBP13.9□□□□□ -0.18
NUP54-211ENST00000512151 PTF1AQ7RTS3 328 aa13.9□□□□□ -0.18
NUP54-211ENST00000512151 ANKARQ7Z5J8 1434 aa13.9□□□□□ -0.18
NUP54-211ENST00000512151 PRR36Q9H6K5 1346 aa13.89□□□□□ -0.19
NUP54-211ENST00000512151 RGL3Q3MIN7 710 aa13.89□□□□□ -0.19
NUP54-211ENST00000512151 SPATA31E1Q6ZUB1 1445 aa13.89□□□□□ -0.19
NUP54-211ENST00000512151 SSH2Q76I76 1423 aa13.89□□□□□ -0.19
NUP54-211ENST00000512151 PROM2Q8N271 834 aa13.88□□□□□ -0.19
NUP54-211ENST00000512151 PRAM1Q96QH2 718 aa13.88□□□□□ -0.19
NUP54-211ENST00000512151 GPRASP1Q5JY77 1395 aa13.88□□□□□ -0.19
NUP54-211ENST00000512151 GIGYF1O75420 1035 aaPredicted RBP13.87□□□□□ -0.19
NUP54-211ENST00000512151 ZC3H6P61129 1189 aaKnown RBP13.87□□□□□ -0.19
NUP54-211ENST00000512151 LARP1Q6PKG0 1096 aaKnown RBP13.87□□□□□ -0.19
NUP54-211ENST00000512151 PEAK1Q9H792 1746 aa13.87□□□□□ -0.19
NUP54-211ENST00000512151 RGPD3A6NKT7 1758 aaPredicted RBP13.87□□□□□ -0.19
NUP54-211ENST00000512151 RGPD4Q7Z3J3 1758 aa13.87□□□□□ -0.19
NUP54-211ENST00000512151 SGIP1Q9BQI5 828 aa13.86□□□□□ -0.19
NUP54-211ENST00000512151 CEP350Q5VT06 3117 aa13.86□□□□□ -0.19
NUP54-211ENST00000512151 ANKRD30BQ9BXX2 1392 aa13.86□□□□□ -0.19
NUP54-211ENST00000512151 PHRF1Q9P1Y6 1649 aaKnown RBP13.86□□□□□ -0.19
NUP54-211ENST00000512151 PLSCR1O15162 318 aa13.85□□□□□ -0.19
NUP54-211ENST00000512151 PAK3O75914 559 aaPredicted RBP13.85□□□□□ -0.19
NUP54-211ENST00000512151 TCP11L2Q8N4U5 519 aa13.85□□□□□ -0.19
NUP54-211ENST00000512151 SBF2Q86WG5 1849 aa13.85□□□□□ -0.19
NUP54-211ENST00000512151 HIRIP3Q9BW71 556 aaPredicted RBP13.84□□□□□ -0.19
NUP54-211ENST00000512151 C14orf93Q9H972 538 aaKnown RBP13.84□□□□□ -0.19
NUP54-211ENST00000512151 CFAP70Q5T0N1 1121 aa13.83□□□□□ -0.19
NUP54-211ENST00000512151 BCL11BQ9C0K0 894 aaPredicted RBP13.83□□□□□ -0.19
NUP54-211ENST00000512151 PARP4Q9UKK3 1724 aaKnown RBP13.83□□□□□ -0.2
NUP54-211ENST00000512151 DLC1Q96QB1 1528 aa13.83□□□□□ -0.2
NUP54-211ENST00000512151 EVA1CP58658 441 aa13.83□□□□□ -0.2
NUP54-211ENST00000512151 NUTM2GQ5VZR2 741 aa13.83□□□□□ -0.2
NUP54-211ENST00000512151 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.2
NUP54-211ENST00000512151 SHANK3Q9BYB0 1731 aa13.82□□□□□ -0.2
NUP54-211ENST00000512151 LMO7Q8WWI1 1683 aa13.81□□□□□ -0.2
NUP54-211ENST00000512151 DHX57Q6P158 1386 aaKnown RBP13.81□□□□□ -0.2
NUP54-211ENST00000512151 NGDNQ8NEJ9 315 aaKnown RBP13.81□□□□□ -0.2
NUP54-211ENST00000512151 OVOS2A0A0G2JMS6 1433 aa13.81□□□□□ -0.2
NUP54-211ENST00000512151 OVOS2A0A0J9YW53 1432 aa13.81□□□□□ -0.2
NUP54-211ENST00000512151 OVOS2Q6IE36 1432 aa13.81□□□□□ -0.2
NUP54-211ENST00000512151 TULP4Q9NRJ4 1543 aa13.8□□□□□ -0.2
NUP54-211ENST00000512151 POGKQ9P215 609 aa13.8□□□□□ -0.2
NUP54-211ENST00000512151 MTFR1LQ9H019 292 aa13.79□□□□□ -0.2
NUP54-211ENST00000512151 ATP7BP35670 1465 aa13.79□□□□□ -0.2
NUP54-211ENST00000512151 MINK1Q8N4C8 1332 aaPredicted RBP13.79□□□□□ -0.2
NUP54-211ENST00000512151 MAP3K5Q99683 1374 aa13.78□□□□□ -0.2
NUP54-211ENST00000512151 LRRC37A3O60309 1634 aa13.78□□□□□ -0.2
NUP54-211ENST00000512151 SLC15A2Q16348 729 aa13.78□□□□□ -0.2
NUP54-211ENST00000512151 ARXQ96QS3 562 aa13.78□□□□□ -0.2
NUP54-211ENST00000512151 STK32BQ9NY57 414 aa13.78□□□□□ -0.2
NUP54-211ENST00000512151 THRAP3Q9Y2W1 955 aaKnown RBP13.78□□□□□ -0.2
NUP54-211ENST00000512151 GPR162Q16538 588 aa13.77□□□□□ -0.21
NUP54-211ENST00000512151 WASLO00401 505 aaPredicted RBP13.76□□□□□ -0.21
NUP54-211ENST00000512151 TXNRD1Q16881 649 aa13.76□□□□□ -0.21
NUP54-211ENST00000512151 COL5A2P05997 1499 aaPredicted RBP13.75□□□□□ -0.21
NUP54-211ENST00000512151 C11orf95C9JLR9 678 aaPredicted RBP13.75□□□□□ -0.21
NUP54-211ENST00000512151 PPARGC1BQ86YN6 1023 aaKnown RBP13.75□□□□□ -0.21
NUP54-211ENST00000512151 CPDO75976 1380 aa13.75□□□□□ -0.21
NUP54-211ENST00000512151 MARCH10Q8NA82 808 aaPredicted RBP13.74□□□□□ -0.21
NUP54-211ENST00000512151 ADGRB1O14514 1584 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms