RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.5■■□□□ 1.35
DDX41-213ENST00000512027 RGS12O14924 1447 aa23.5■■□□□ 1.35
DDX41-213ENST00000512027 PHRF1Q9P1Y6 1649 aaKnown RBP23.49■■□□□ 1.35
DDX41-213ENST00000512027 PLEKHG3A1L390 1219 aa23.49■■□□□ 1.35
DDX41-213ENST00000512027 ATRNO75882 1429 aa23.49■■□□□ 1.35
DDX41-213ENST00000512027 SLIT2O94813 1529 aa23.49■■□□□ 1.35
DDX41-213ENST00000512027 RBM6P78332 1123 aaKnown RBP23.47■■□□□ 1.35
DDX41-213ENST00000512027 NUTM2GQ5VZR2 741 aa23.47■■□□□ 1.35
DDX41-213ENST00000512027 EVC2Q86UK5 1308 aa23.47■■□□□ 1.35
DDX41-213ENST00000512027 CDK12Q9NYV4 1490 aaPredicted RBP23.47■■□□□ 1.35
DDX41-213ENST00000512027 CABP1Q9NZU7 370 aa23.45■■□□□ 1.34
DDX41-213ENST00000512027 TRPC5Q9UL62 973 aaPredicted RBP23.45■■□□□ 1.34
DDX41-213ENST00000512027 NWD2Q9ULI1 1742 aa23.45■■□□□ 1.34
DDX41-213ENST00000512027 AKAP12Q02952 1782 aa23.42■■□□□ 1.34
DDX41-213ENST00000512027 NRAPQ86VF7 1730 aa23.42■■□□□ 1.34
DDX41-213ENST00000512027 GLI3P10071 1580 aa23.42■■□□□ 1.34
DDX41-213ENST00000512027 COL14A1Q05707 1796 aaKnown RBP23.41■■□□□ 1.34
DDX41-213ENST00000512027 SBNO2Q9Y2G9 1366 aa23.4■■□□□ 1.34
DDX41-213ENST00000512027 FAM83GA6ND36 823 aa23.4■■□□□ 1.34
DDX41-213ENST00000512027 UNC5CLQ8IV45 518 aa23.4■■□□□ 1.34
DDX41-213ENST00000512027 USP6P35125 1406 aa23.4■■□□□ 1.34
DDX41-213ENST00000512027 NRKQ7Z2Y5 1582 aa23.4■■□□□ 1.34
DDX41-213ENST00000512027 ABTB2Q8N961 1025 aa23.37■■□□□ 1.33
DDX41-213ENST00000512027 PIK3C2AO00443 1686 aa23.37■■□□□ 1.33
DDX41-213ENST00000512027 GJD4Q96KN9 370 aaPredicted RBP23.36■■□□□ 1.33
DDX41-213ENST00000512027 CLSPNQ9HAW4 1339 aa23.35■■□□□ 1.33
DDX41-213ENST00000512027 ATAD2Q6PL18 1390 aa23.35■■□□□ 1.33
DDX41-213ENST00000512027 MON2Q7Z3U7 1717 aa23.34■■□□□ 1.33
DDX41-213ENST00000512027 ST20-MTHFSA0A0A6YYL1 179 aa23.34■■□□□ 1.33
DDX41-213ENST00000512027 CCER1Q8TC90 406 aaPredicted RBP23.34■■□□□ 1.33
DDX41-213ENST00000512027 BTG4Q9NY30 223 aa23.34■■□□□ 1.33
DDX41-213ENST00000512027 KIAA0232Q92628 1395 aa23.34■■□□□ 1.33
DDX41-213ENST00000512027 SSH2Q76I76 1423 aa23.33■■□□□ 1.33
DDX41-213ENST00000512027 ZC3H6P61129 1189 aaKnown RBP23.33■■□□□ 1.33
DDX41-213ENST00000512027 CHRNA2Q15822 529 aa23.33■■□□□ 1.33
DDX41-213ENST00000512027 BRWD3Q6RI45 1802 aa23.32■■□□□ 1.32
DDX41-213ENST00000512027 PRDM11Q9NQV5 511 aa23.32■■□□□ 1.32
DDX41-213ENST00000512027 USP19O94966 1318 aa23.32■■□□□ 1.32
DDX41-213ENST00000512027 TESK2Q96S53 571 aa23.31■■□□□ 1.32
DDX41-213ENST00000512027 CCDC9Q9Y3X0 531 aaKnown RBP23.31■■□□□ 1.32
DDX41-213ENST00000512027 CPSF1Q10570 1443 aaKnown RBP23.31■■□□□ 1.32
DDX41-213ENST00000512027 USP47Q96K76 1375 aa23.3■■□□□ 1.32
DDX41-213ENST00000512027 VPS72Q15906 364 aa23.3■■□□□ 1.32
DDX41-213ENST00000512027 UPF1Q92900 1129 aaKnown RBP eCLIP23.3■■□□□ 1.32
DDX41-213ENST00000512027 CD163L1Q9NR16 1453 aa23.3■■□□□ 1.32
DDX41-213ENST00000512027 BRD4O60885 1362 aaPredicted RBP23.29■■□□□ 1.32
DDX41-213ENST00000512027 SLIT3O75094 1523 aa23.28■■□□□ 1.32
DDX41-213ENST00000512027 KTN1Q86UP2 1357 aaKnown RBP23.27■■□□□ 1.32
DDX41-213ENST00000512027 NLRP13Q86W25 1043 aa23.27■■□□□ 1.32
DDX41-213ENST00000512027 TMC1Q8TDI8 760 aa23.27■■□□□ 1.32
DDX41-213ENST00000512027 LMO7Q8WWI1 1683 aa23.27■■□□□ 1.32
DDX41-213ENST00000512027 TTC21BQ7Z4L5 1316 aa23.27■■□□□ 1.32
DDX41-213ENST00000512027 NLRP6P59044 892 aa23.26■■□□□ 1.31
DDX41-213ENST00000512027 TIMELESSQ9UNS1 1208 aa23.26■■□□□ 1.31
DDX41-213ENST00000512027 EP400Q96L91 3159 aa23.26■■□□□ 1.31
DDX41-213ENST00000512027 SLC12A5Q9H2X9 1139 aa23.25■■□□□ 1.31
DDX41-213ENST00000512027 GCP02774 474 aa23.24■■□□□ 1.31
DDX41-213ENST00000512027 ZNF692Q9BU19 519 aaPredicted RBP23.24■■□□□ 1.31
DDX41-213ENST00000512027 CAMTA1Q9Y6Y1 1673 aa23.24■■□□□ 1.31
DDX41-213ENST00000512027 ZBTB7CA1YPR0 619 aa23.23■■□□□ 1.31
DDX41-213ENST00000512027 STRN4Q9NRL3 753 aa23.23■■□□□ 1.31
DDX41-213ENST00000512027 CPDO75976 1380 aa23.22■■□□□ 1.31
DDX41-213ENST00000512027 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.21■■□□□ 1.31
DDX41-213ENST00000512027 SEPT12Q8IYM1 358 aa23.21■■□□□ 1.31
DDX41-213ENST00000512027 ZRANB1Q9UGI0 708 aa23.21■■□□□ 1.31
DDX41-213ENST00000512027 A0A1W2PP64 1363 aa23.21■■□□□ 1.31
DDX41-213ENST00000512027 FAM98CQ17RN3 349 aaKnown RBP23.2■■□□□ 1.3
DDX41-213ENST00000512027 SPATA31A5Q5VU36 1347 aa23.19■■□□□ 1.3
DDX41-213ENST00000512027 SPATA31A7Q8IWB4 1347 aa23.19■■□□□ 1.3
DDX41-213ENST00000512027 TTC21AQ8NDW8 1320 aa23.19■■□□□ 1.3
DDX41-213ENST00000512027 A0A0G2JS52 829 aa23.19■■□□□ 1.3
DDX41-213ENST00000512027 SOX12O15370 315 aa23.19■■□□□ 1.3
DDX41-213ENST00000512027 MYT1Q01538 1121 aa23.19■■□□□ 1.3
DDX41-213ENST00000512027 COL18A1P39060 1754 aa23.18■■□□□ 1.3
DDX41-213ENST00000512027 RGPD5Q99666 1765 aa23.18■■□□□ 1.3
DDX41-213ENST00000512027 USP54Q70EL1 1684 aa23.18■■□□□ 1.3
DDX41-213ENST00000512027 THSD7AQ9UPZ6 1657 aa23.18■■□□□ 1.3
DDX41-213ENST00000512027 HDGFL2Q7Z4V5 671 aaPredicted RBP23.17■■□□□ 1.3
DDX41-213ENST00000512027 NME9Q86XW9 330 aa23.17■■□□□ 1.3
DDX41-213ENST00000512027 NFAT5O94916 1531 aa23.17■■□□□ 1.3
DDX41-213ENST00000512027 PUS7Q96PZ0 661 aaKnown RBP23.16■■□□□ 1.3
DDX41-213ENST00000512027 EDC4Q6P2E9 1401 aaKnown RBP23.16■■□□□ 1.3
DDX41-213ENST00000512027 ONECUT3O60422 494 aaPredicted RBP23.15■■□□□ 1.3
DDX41-213ENST00000512027 COL5A2P05997 1499 aaPredicted RBP23.15■■□□□ 1.3
DDX41-213ENST00000512027 SPATA31A1Q5TZJ5 1347 aa23.14■■□□□ 1.3
DDX41-213ENST00000512027 MYOM1P52179 1685 aa23.14■■□□□ 1.29
DDX41-213ENST00000512027 TMF1P82094 1093 aa23.14■■□□□ 1.29
DDX41-213ENST00000512027 USP35Q9P2H5 1018 aa23.14■■□□□ 1.29
DDX41-213ENST00000512027 EVA1CP58658 441 aa23.13■■□□□ 1.29
DDX41-213ENST00000512027 LARP1Q6PKG0 1096 aaKnown RBP23.13■■□□□ 1.29
DDX41-213ENST00000512027 TERF2IPQ9NYB0 399 aa23.13■■□□□ 1.29
DDX41-213ENST00000512027 LTN1O94822 1766 aa23.12■■□□□ 1.29
DDX41-213ENST00000512027 USP31Q70CQ4 1352 aa23.11■■□□□ 1.29
DDX41-213ENST00000512027 NINLQ9Y2I6 1382 aa23.11■■□□□ 1.29
DDX41-213ENST00000512027 KRT27Q7Z3Y8 459 aa23.1■■□□□ 1.29
DDX41-213ENST00000512027 AATKQ6ZMQ8 1374 aa23.1■■□□□ 1.29
DDX41-213ENST00000512027 SLC24A1O60721 1099 aa23.09■■□□□ 1.29
DDX41-213ENST00000512027 AXIN2Q9Y2T1 843 aa23.09■■□□□ 1.29
DDX41-213ENST00000512027 FAM182BQ5T319 152 aa23.08■■□□□ 1.29
DDX41-213ENST00000512027 ARHGEF25Q86VW2 580 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms