RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NUDT12Q9BQG2 462 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 PRDM9Q9NQV7 894 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 EVA1BQ9NVM1 165 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 FKBPLQ9UIM3 349 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 MAP10Q9P2G4 905 aa7.75□□□□□ -1.17
HMGB1P28-201ENST00000507778 KCNH2Q12809 1159 aa7.74□□□□□ -1.17
HMGB1P28-201ENST00000507778 HDGFL1Q5TGJ6 251 aa7.74□□□□□ -1.17
HMGB1P28-201ENST00000507778 GLMNQ92990 594 aa7.74□□□□□ -1.17
HMGB1P28-201ENST00000507778 SLC6A16Q9GZN6 736 aa7.74□□□□□ -1.17
HMGB1P28-201ENST00000507778 ARMC2Q8NEN0 867 aa7.73□□□□□ -1.17
HMGB1P28-201ENST00000507778 ZC3H4Q9UPT8 1303 aaKnown RBP7.73□□□□□ -1.17
HMGB1P28-201ENST00000507778 SOX11P35716 441 aa7.72□□□□□ -1.17
HMGB1P28-201ENST00000507778 CCDC24Q8N4L8 307 aa7.72□□□□□ -1.17
HMGB1P28-201ENST00000507778 PLA2G2EQ9NZK7 142 aa7.72□□□□□ -1.17
HMGB1P28-201ENST00000507778 NR1H3Q13133 447 aa7.71□□□□□ -1.18
HMGB1P28-201ENST00000507778 NKX2-3Q8TAU0 364 aa7.71□□□□□ -1.18
HMGB1P28-201ENST00000507778 ALG2Q9H553 416 aa7.71□□□□□ -1.18
HMGB1P28-201ENST00000507778 ZBBXA8MT70 800 aa7.7□□□□□ -1.18
HMGB1P28-201ENST00000507778 EIF4G2P78344 907 aaKnown RBP eCLIP7.7□□□□□ -1.18
HMGB1P28-201ENST00000507778 SEMA3FQ13275 785 aa7.7□□□□□ -1.18
HMGB1P28-201ENST00000507778 ADAMTS19Q8TE59 1207 aa7.7□□□□□ -1.18
HMGB1P28-201ENST00000507778 S1PR4O95977 384 aa7.69□□□□□ -1.18
HMGB1P28-201ENST00000507778 FBXO45P0C2W1 286 aa7.69□□□□□ -1.18
HMGB1P28-201ENST00000507778 NBPF14Q5TI25 921 aa7.69□□□□□ -1.18
HMGB1P28-201ENST00000507778 GPKOWQ92917 476 aaPredicted RBP eCLIP7.69□□□□□ -1.18
HMGB1P28-201ENST00000507778 KCNC4Q03721 635 aa7.68□□□□□ -1.18
HMGB1P28-201ENST00000507778 PTK2Q05397 1052 aa7.68□□□□□ -1.18
HMGB1P28-201ENST00000507778 PTCRAQ6ISU1 281 aaPredicted RBP7.68□□□□□ -1.18
HMGB1P28-201ENST00000507778 PDXDC2PQ6P474 469 aa7.68□□□□□ -1.18
HMGB1P28-201ENST00000507778 UNC93B1Q9H1C4 597 aa7.68□□□□□ -1.18
HMGB1P28-201ENST00000507778 GPSM3Q9Y4H4 160 aa7.68□□□□□ -1.18
HMGB1P28-201ENST00000507778 FCF1Q9Y324 198 aaKnown RBP7.66□□□□□ -1.18
HMGB1P28-201ENST00000507778 ITGBL1O95965 494 aaPredicted RBP7.65□□□□□ -1.18
HMGB1P28-201ENST00000507778 PPP1R12CQ9BZL4 782 aa7.64□□□□□ -1.19
HMGB1P28-201ENST00000507778 GGCXP38435 758 aa7.63□□□□□ -1.19
HMGB1P28-201ENST00000507778 MCCD1P59942 119 aaPredicted RBP7.63□□□□□ -1.19
HMGB1P28-201ENST00000507778 BAP1Q92560 729 aa7.63□□□□□ -1.19
HMGB1P28-201ENST00000507778 ZNF592Q92610 1267 aa7.63□□□□□ -1.19
HMGB1P28-201ENST00000507778 ARHGAP9Q9BRR9 750 aa7.63□□□□□ -1.19
HMGB1P28-201ENST00000507778 PALM3A6NDB9 673 aaPredicted RBP7.62□□□□□ -1.19
HMGB1P28-201ENST00000507778 PPEF1O14829 653 aaPredicted RBP7.62□□□□□ -1.19
HMGB1P28-201ENST00000507778 SH3BP5LQ7L8J4 393 aa7.62□□□□□ -1.19
HMGB1P28-201ENST00000507778 ZBTB33Q86T24 672 aa7.62□□□□□ -1.19
HMGB1P28-201ENST00000507778 OCSTAMPQ9BR26 566 aa7.62□□□□□ -1.19
HMGB1P28-201ENST00000507778 TFIP11Q9UBB9 837 aaKnown RBP7.62□□□□□ -1.19
HMGB1P28-201ENST00000507778 ACIN1Q9UKV3 1341 aaKnown RBP7.61□□□□□ -1.19
HMGB1P28-201ENST00000507778 PPP1R15AO75807 674 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P28-201ENST00000507778 RFX1P22670 979 aa7.61□□□□□ -1.19
HMGB1P28-201ENST00000507778 ADAM32Q8TC27 787 aa7.61□□□□□ -1.19
HMGB1P28-201ENST00000507778 UCN2Q96RP3 112 aa7.61□□□□□ -1.19
HMGB1P28-201ENST00000507778 PCDHB9Q9Y5E1 797 aa7.61□□□□□ -1.19
HMGB1P28-201ENST00000507778 RNF223E7ERA6 249 aa7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 ZBTB24O43167 697 aaPredicted RBP7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 AGERQ15109 404 aa7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 CFAP70Q5T0N1 1121 aa7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 BPHLQ86WA6 291 aaPredicted RBP7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 ANKLE1Q8NAG6 615 aa7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 ZNF511Q8NB15 262 aa7.6□□□□□ -1.19
HMGB1P28-201ENST00000507778 MAGEB6P1A0A0J9YX57 407 aa7.59□□□□□ -1.19
HMGB1P28-201ENST00000507778 LMOD1P29536 600 aaPredicted RBP7.59□□□□□ -1.19
HMGB1P28-201ENST00000507778 LINC01559Q495D7 138 aa7.59□□□□□ -1.19
HMGB1P28-201ENST00000507778 TBC1D9Q6ZT07 1266 aa7.59□□□□□ -1.19
HMGB1P28-201ENST00000507778 PBXIP1Q96AQ6 731 aa7.59□□□□□ -1.19
HMGB1P28-201ENST00000507778 CEP126Q9P2H0 1117 aa7.59□□□□□ -1.19
HMGB1P28-201ENST00000507778 PPP1R18Q6NYC8 613 aa7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 SH3RF1Q7Z6J0 888 aa7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 DZIP3Q86Y13 1208 aaKnown RBP7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 NFATC2IPQ8NCF5 419 aa7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 FOXJ1Q92949 421 aa7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 CARD14Q9BXL6 1004 aa7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.58□□□□□ -1.2
HMGB1P28-201ENST00000507778 ATP9BO43861 1147 aa7.57□□□□□ -1.2
HMGB1P28-201ENST00000507778 SH3BP2P78314 561 aa7.57□□□□□ -1.2
HMGB1P28-201ENST00000507778 SLFNL1Q499Z3 407 aa7.57□□□□□ -1.2
HMGB1P28-201ENST00000507778 MAFBQ9Y5Q3 323 aaPredicted RBP7.57□□□□□ -1.2
HMGB1P28-201ENST00000507778 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P28-201ENST00000507778 PIK3CDO00329 1044 aa7.56□□□□□ -1.2
HMGB1P28-201ENST00000507778 PDIA4P13667 645 aaKnown RBP7.56□□□□□ -1.2
HMGB1P28-201ENST00000507778 ERFEQ4G0M1 354 aa7.56□□□□□ -1.2
HMGB1P28-201ENST00000507778 SKIP12755 728 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 RPIAP49247 311 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 SRPK2P78362 688 aaKnown RBP7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 TRIM32Q13049 653 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 C4orf48Q5BLP8 95 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 PLA2G2CQ5R387 149 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 IFFO2Q5TF58 517 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 RNF135Q8IUD6 432 aa7.55□□□□□ -1.2
HMGB1P28-201ENST00000507778 WNT7BP56706 349 aa7.54□□□□□ -1.2
HMGB1P28-201ENST00000507778 PHTF2Q8N3S3 785 aa7.54□□□□□ -1.2
HMGB1P28-201ENST00000507778 CD2BP2O95400 341 aaKnown RBP7.53□□□□□ -1.2
HMGB1P28-201ENST00000507778 FAM174AQ8TBP5 190 aa7.53□□□□□ -1.2
HMGB1P28-201ENST00000507778 SLC10A4Q96EP9 437 aa7.53□□□□□ -1.2
HMGB1P28-201ENST00000507778 C1QTNF2Q9BXJ5 285 aa7.53□□□□□ -1.2
HMGB1P28-201ENST00000507778 VRTNQ9H8Y1 702 aa7.53□□□□□ -1.2
HMGB1P28-201ENST00000507778 USP17L5A8MUK1 530 aa7.52□□□□□ -1.21
HMGB1P28-201ENST00000507778 CDCA8Q53HL2 280 aa7.52□□□□□ -1.21
HMGB1P28-201ENST00000507778 TRMT44Q8IYL2 757 aaKnown RBP7.52□□□□□ -1.21
HMGB1P28-201ENST00000507778 RETREG2Q8NC44 543 aa7.52□□□□□ -1.21
HMGB1P28-201ENST00000507778 CDV3Q9UKY7 258 aaKnown RBP7.52□□□□□ -1.21
HMGB1P28-201ENST00000507778 USP17L3A6NCW0 530 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms