RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 TRPC5Q9UL62 973 aaPredicted RBP20.26■□□□□ 0.83
HOXC9-202ENST00000504557 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.24■□□□□ 0.83
HOXC9-202ENST00000504557 CRYBG1Q9Y4K1 1723 aa20.24■□□□□ 0.83
HOXC9-202ENST00000504557 BCL9LQ86UU0 1499 aa20.24■□□□□ 0.83
HOXC9-202ENST00000504557 RGS12O14924 1447 aa20.23■□□□□ 0.83
HOXC9-202ENST00000504557 CABP1Q9NZU7 370 aa20.23■□□□□ 0.83
HOXC9-202ENST00000504557 POLR3AO14802 1390 aaPredicted RBP20.22■□□□□ 0.83
HOXC9-202ENST00000504557 ATRNO75882 1429 aa20.22■□□□□ 0.83
HOXC9-202ENST00000504557 PLEKHG3A1L390 1219 aa20.22■□□□□ 0.83
HOXC9-202ENST00000504557 PHRF1Q9P1Y6 1649 aaKnown RBP20.21■□□□□ 0.83
HOXC9-202ENST00000504557 CCDC9Q9Y3X0 531 aaKnown RBP20.21■□□□□ 0.83
HOXC9-202ENST00000504557 CDK12Q9NYV4 1490 aaPredicted RBP20.2■□□□□ 0.82
HOXC9-202ENST00000504557 NWD2Q9ULI1 1742 aa20.2■□□□□ 0.82
HOXC9-202ENST00000504557 UNC5CLQ8IV45 518 aa20.2■□□□□ 0.82
HOXC9-202ENST00000504557 SLIT2O94813 1529 aa20.2■□□□□ 0.82
HOXC9-202ENST00000504557 FAM83GA6ND36 823 aa20.19■□□□□ 0.82
HOXC9-202ENST00000504557 ABTB2Q8N961 1025 aa20.19■□□□□ 0.82
HOXC9-202ENST00000504557 COL14A1Q05707 1796 aaKnown RBP20.18■□□□□ 0.82
HOXC9-202ENST00000504557 AKAP12Q02952 1782 aa20.17■□□□□ 0.82
HOXC9-202ENST00000504557 CCER1Q8TC90 406 aaPredicted RBP20.17■□□□□ 0.82
HOXC9-202ENST00000504557 ZC3H6P61129 1189 aaKnown RBP20.16■□□□□ 0.82
HOXC9-202ENST00000504557 GJD4Q96KN9 370 aaPredicted RBP20.16■□□□□ 0.82
HOXC9-202ENST00000504557 PRDM11Q9NQV5 511 aa20.16■□□□□ 0.82
HOXC9-202ENST00000504557 BTG4Q9NY30 223 aa20.15■□□□□ 0.82
HOXC9-202ENST00000504557 GLI3P10071 1580 aa20.15■□□□□ 0.82
HOXC9-202ENST00000504557 NRAPQ86VF7 1730 aa20.15■□□□□ 0.82
HOXC9-202ENST00000504557 ZBTB7CA1YPR0 619 aa20.14■□□□□ 0.81
HOXC9-202ENST00000504557 CHRNA2Q15822 529 aa20.14■□□□□ 0.81
HOXC9-202ENST00000504557 BRWD3Q6RI45 1802 aa20.13■□□□□ 0.81
HOXC9-202ENST00000504557 USP6P35125 1406 aa20.13■□□□□ 0.81
HOXC9-202ENST00000504557 TMC1Q8TDI8 760 aa20.13■□□□□ 0.81
HOXC9-202ENST00000504557 ATAD2Q6PL18 1390 aa20.12■□□□□ 0.81
HOXC9-202ENST00000504557 KIAA0232Q92628 1395 aa20.12■□□□□ 0.81
HOXC9-202ENST00000504557 A0A0G2JS52 829 aa20.12■□□□□ 0.81
HOXC9-202ENST00000504557 MYT1Q01538 1121 aa20.12■□□□□ 0.81
HOXC9-202ENST00000504557 NRKQ7Z2Y5 1582 aa20.12■□□□□ 0.81
HOXC9-202ENST00000504557 ST20-MTHFSA0A0A6YYL1 179 aa20.11■□□□□ 0.81
HOXC9-202ENST00000504557 SBNO2Q9Y2G9 1366 aa20.1■□□□□ 0.81
HOXC9-202ENST00000504557 PIK3C2AO00443 1686 aa20.1■□□□□ 0.81
HOXC9-202ENST00000504557 NLRP6P59044 892 aa20.1■□□□□ 0.81
HOXC9-202ENST00000504557 NLRP13Q86W25 1043 aa20.1■□□□□ 0.81
HOXC9-202ENST00000504557 UPF1Q92900 1129 aaKnown RBP eCLIP20.1■□□□□ 0.81
HOXC9-202ENST00000504557 VPS72Q15906 364 aa20.09■□□□□ 0.81
HOXC9-202ENST00000504557 STRN4Q9NRL3 753 aa20.09■□□□□ 0.81
HOXC9-202ENST00000504557 MON2Q7Z3U7 1717 aa20.08■□□□□ 0.81
HOXC9-202ENST00000504557 SOX12O15370 315 aa20.08■□□□□ 0.81
HOXC9-202ENST00000504557 KTN1Q86UP2 1357 aaKnown RBP20.08■□□□□ 0.8
HOXC9-202ENST00000504557 CLSPNQ9HAW4 1339 aa20.07■□□□□ 0.8
HOXC9-202ENST00000504557 USP47Q96K76 1375 aa20.07■□□□□ 0.8
HOXC9-202ENST00000504557 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.06■□□□□ 0.8
HOXC9-202ENST00000504557 TTC21BQ7Z4L5 1316 aa20.05■□□□□ 0.8
HOXC9-202ENST00000504557 ZNF692Q9BU19 519 aaPredicted RBP20.05■□□□□ 0.8
HOXC9-202ENST00000504557 SLC12A5Q9H2X9 1139 aa20.05■□□□□ 0.8
HOXC9-202ENST00000504557 BRD4O60885 1362 aaPredicted RBP20.05■□□□□ 0.8
HOXC9-202ENST00000504557 USP19O94966 1318 aa20.04■□□□□ 0.8
HOXC9-202ENST00000504557 GCP02774 474 aa20.04■□□□□ 0.8
HOXC9-202ENST00000504557 EVA1CP58658 441 aa20.04■□□□□ 0.8
HOXC9-202ENST00000504557 FAM98CQ17RN3 349 aaKnown RBP20.04■□□□□ 0.8
HOXC9-202ENST00000504557 SEPT12Q8IYM1 358 aa20.04■□□□□ 0.8
HOXC9-202ENST00000504557 TESK2Q96S53 571 aa20.03■□□□□ 0.8
HOXC9-202ENST00000504557 USP35Q9P2H5 1018 aa20.03■□□□□ 0.8
HOXC9-202ENST00000504557 CPSF1Q10570 1443 aaKnown RBP20.02■□□□□ 0.8
HOXC9-202ENST00000504557 SSH2Q76I76 1423 aa20.02■□□□□ 0.8
HOXC9-202ENST00000504557 HDGFL2Q7Z4V5 671 aaPredicted RBP20.02■□□□□ 0.8
HOXC9-202ENST00000504557 RGPD5Q99666 1765 aa20.02■□□□□ 0.8
HOXC9-202ENST00000504557 ZRANB1Q9UGI0 708 aa20.01■□□□□ 0.79
HOXC9-202ENST00000504557 TIMELESSQ9UNS1 1208 aa20.01■□□□□ 0.79
HOXC9-202ENST00000504557 CD163L1Q9NR16 1453 aa20■□□□□ 0.79
HOXC9-202ENST00000504557 SLIT3O75094 1523 aa20■□□□□ 0.79
HOXC9-202ENST00000504557 LMO7Q8WWI1 1683 aa20■□□□□ 0.79
HOXC9-202ENST00000504557 CAMTA1Q9Y6Y1 1673 aa20■□□□□ 0.79
HOXC9-202ENST00000504557 TTC21AQ8NDW8 1320 aa20■□□□□ 0.79
HOXC9-202ENST00000504557 SPATA31A5Q5VU36 1347 aa19.99■□□□□ 0.79
HOXC9-202ENST00000504557 SPATA31A7Q8IWB4 1347 aa19.99■□□□□ 0.79
HOXC9-202ENST00000504557 TMF1P82094 1093 aa19.98■□□□□ 0.79
HOXC9-202ENST00000504557 NME9Q86XW9 330 aa19.98■□□□□ 0.79
HOXC9-202ENST00000504557 TERF2IPQ9NYB0 399 aa19.98■□□□□ 0.79
HOXC9-202ENST00000504557 A0A1W2PP64 1363 aa19.97■□□□□ 0.79
HOXC9-202ENST00000504557 CPDO75976 1380 aa19.97■□□□□ 0.79
HOXC9-202ENST00000504557 LARP1Q6PKG0 1096 aaKnown RBP19.96■□□□□ 0.79
HOXC9-202ENST00000504557 KRT27Q7Z3Y8 459 aa19.96■□□□□ 0.79
HOXC9-202ENST00000504557 SPATA31A1Q5TZJ5 1347 aa19.95■□□□□ 0.78
HOXC9-202ENST00000504557 LTN1O94822 1766 aa19.95■□□□□ 0.78
HOXC9-202ENST00000504557 COL18A1P39060 1754 aa19.94■□□□□ 0.78
HOXC9-202ENST00000504557 FAM182BQ5T319 152 aa19.94■□□□□ 0.78
HOXC9-202ENST00000504557 EP400Q96L91 3159 aa19.93■□□□□ 0.78
HOXC9-202ENST00000504557 SLC24A1O60721 1099 aa19.93■□□□□ 0.78
HOXC9-202ENST00000504557 KCNH5Q8NCM2 988 aa19.93■□□□□ 0.78
HOXC9-202ENST00000504557 POLR3GLQ9BT43 218 aa19.93■□□□□ 0.78
HOXC9-202ENST00000504557 EDC4Q6P2E9 1401 aaKnown RBP19.93■□□□□ 0.78
HOXC9-202ENST00000504557 COL5A2P05997 1499 aaPredicted RBP19.92■□□□□ 0.78
HOXC9-202ENST00000504557 THSD7AQ9UPZ6 1657 aa19.92■□□□□ 0.78
HOXC9-202ENST00000504557 ONECUT3O60422 494 aaPredicted RBP19.92■□□□□ 0.78
HOXC9-202ENST00000504557 PUS7Q96PZ0 661 aaKnown RBP19.92■□□□□ 0.78
HOXC9-202ENST00000504557 NFAT5O94916 1531 aa19.91■□□□□ 0.78
HOXC9-202ENST00000504557 AATKQ6ZMQ8 1374 aa19.9■□□□□ 0.78
HOXC9-202ENST00000504557 NINLQ9Y2I6 1382 aa19.9■□□□□ 0.78
HOXC9-202ENST00000504557 USP54Q70EL1 1684 aa19.9■□□□□ 0.78
HOXC9-202ENST00000504557 TOM1L2Q6ZVM7 507 aa19.89■□□□□ 0.77
HOXC9-202ENST00000504557 AXIN2Q9Y2T1 843 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms