RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 PCDHGA10Q9Y5H3 936 aa7.18□□□□□ -1.26
NIPBL-204ENST00000504430 LDLRAD1Q5T700 205 aa7.18□□□□□ -1.26
NIPBL-204ENST00000504430 PIK3R5Q8WYR1 880 aa7.18□□□□□ -1.26
NIPBL-204ENST00000504430 RAD51AP2Q09MP3 1159 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 KCNH2Q12809 1159 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 NR6A1Q15406 480 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 NT5DC4Q86YG4 428 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 ZNF594Q96JF6 807 aaPredicted RBP7.17□□□□□ -1.26
NIPBL-204ENST00000504430 PCDHGC3Q9UN70 934 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 USP17L3A6NCW0 530 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 USP17L4A6NCW7 530 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 C3orf80F5H4A9 247 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 PPFIA4O75335 1185 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 SF3A1Q15459 793 aaKnown RBP7.17□□□□□ -1.26
NIPBL-204ENST00000504430 USP17L2Q6R6M4 530 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 USP17L1Q7RTZ2 530 aa7.17□□□□□ -1.26
NIPBL-204ENST00000504430 PRMT3O60678 531 aa7.16□□□□□ -1.26
NIPBL-204ENST00000504430 ATP2B4P23634 1241 aa7.16□□□□□ -1.26
NIPBL-204ENST00000504430 MAPK1P28482 360 aa7.16□□□□□ -1.26
NIPBL-204ENST00000504430 PAX3P23760 479 aa7.16□□□□□ -1.26
NIPBL-204ENST00000504430 EGFLAMQ63HQ2 1017 aa7.16□□□□□ -1.26
NIPBL-204ENST00000504430 CD46P15529 392 aa7.15□□□□□ -1.26
NIPBL-204ENST00000504430 GPATCH11Q8N954 259 aa7.15□□□□□ -1.26
NIPBL-204ENST00000504430 FAM174AQ8TBP5 190 aa7.15□□□□□ -1.26
NIPBL-204ENST00000504430 PRKAG2Q9UGJ0 569 aa7.15□□□□□ -1.26
NIPBL-204ENST00000504430 PRKAR2AP13861 404 aaKnown RBP7.15□□□□□ -1.26
NIPBL-204ENST00000504430 PDE6BP35913 854 aa7.15□□□□□ -1.26
NIPBL-204ENST00000504430 FOXD4Q12950 439 aaPredicted RBP7.15□□□□□ -1.26
NIPBL-204ENST00000504430 B4GALNT3Q6L9W6 998 aa7.15□□□□□ -1.26
NIPBL-204ENST00000504430 KAT6BQ8WYB5 2073 aa7.15□□□□□ -1.27
NIPBL-204ENST00000504430 TERF2IPQ9NYB0 399 aa7.15□□□□□ -1.27
NIPBL-204ENST00000504430 OATP04181 439 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 ERCC3P19447 782 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 DNAJA1P31689 397 aaKnown RBP7.14□□□□□ -1.27
NIPBL-204ENST00000504430 AAMPQ13685 434 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 NME8Q8N427 588 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 PER1O15534 1290 aaPredicted RBP7.14□□□□□ -1.27
NIPBL-204ENST00000504430 TCEAL1Q15170 157 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 SYMPKQ92797 1274 aaKnown RBP7.14□□□□□ -1.27
NIPBL-204ENST00000504430 MKNK1Q9BUB5 465 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L15C9J2P7 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L10C9JJH3 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L13C9JLJ4 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L12C9JPN9 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L11C9JVI0 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L21D6R901 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L18D6R9N7 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L22D6RA61 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L17D6RBQ6 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L19D6RCP7 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L20D6RJB6 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L24Q0WX57 530 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 ILDR1Q86SU0 546 aaPredicted RBP7.14□□□□□ -1.27
NIPBL-204ENST00000504430 MS4A3Q96HJ5 214 aa7.14□□□□□ -1.27
NIPBL-204ENST00000504430 DMGDHQ9UI17 866 aaKnown RBP7.14□□□□□ -1.27
NIPBL-204ENST00000504430 ACBD3Q9H3P7 528 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 PNMA2Q9UL42 364 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 CFAP99D6REC4 459 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 SKIP12755 728 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 RALBP1Q15311 655 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 DIXDC1Q155Q3 683 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 PDCD7Q8N8D1 485 aaKnown RBP7.13□□□□□ -1.27
NIPBL-204ENST00000504430 PRIMPOLQ96LW4 560 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 SEPT3Q9UH03 358 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 MKRN1Q9UHC7 482 aaKnown RBP7.13□□□□□ -1.27
NIPBL-204ENST00000504430 G3BP2Q9UN86 482 aaKnown RBP7.13□□□□□ -1.27
NIPBL-204ENST00000504430 FAN1Q9Y2M0 1017 aa7.13□□□□□ -1.27
NIPBL-204ENST00000504430 CCDC194A0A1B0GVG4 234 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 USP17L5A8MUK1 530 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 RASA1P20936 1047 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 ZSWIM4Q9H7M6 989 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 CAPN10Q9HC96 672 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 RCCD1A6NED2 376 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 NCOA4Q13772 614 aa7.12□□□□□ -1.27
NIPBL-204ENST00000504430 TTLL13PA6NNM8 815 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 PAK3O75914 559 aaPredicted RBP7.11□□□□□ -1.27
NIPBL-204ENST00000504430 OS9Q13438 667 aaPredicted RBP7.11□□□□□ -1.27
NIPBL-204ENST00000504430 PTPROQ16827 1216 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 CHPF2Q9P2E5 772 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 FAM198AQ9UFP1 575 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 SPOCK3Q9BQ16 436 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 TINF2Q9BSI4 451 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 TMA7Q9Y2S6 64 aaKnown RBP7.11□□□□□ -1.27
NIPBL-204ENST00000504430 TBX22Q9Y458 520 aa7.11□□□□□ -1.27
NIPBL-204ENST00000504430 hCG_2014768A0A024R1R8 64 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 TLDC2A0PJX2 215 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 SETQ01105 290 aaPredicted RBP7.1□□□□□ -1.27
NIPBL-204ENST00000504430 PTK7Q13308 1070 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 ZRANB1Q9UGI0 708 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 TRIM35Q9UPQ4 493 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 JAZF1Q86VZ6 243 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 SLAIN1Q8ND83 568 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 SETDB2Q96T68 719 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 RPS6KL1Q9Y6S9 549 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 BMS1Q14692 1282 aaKnown RBP7.1□□□□□ -1.27
NIPBL-204ENST00000504430 SDE2Q6IQ49 451 aa7.1□□□□□ -1.27
NIPBL-204ENST00000504430 MRPL42Q9Y6G3 142 aaKnown RBP7.1□□□□□ -1.27
NIPBL-204ENST00000504430 U2SURPO15042 1029 aaKnown RBP7.09□□□□□ -1.27
NIPBL-204ENST00000504430 FBXO45P0C2W1 286 aa7.09□□□□□ -1.27
NIPBL-204ENST00000504430 DPYDQ12882 1025 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms