RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 EIF3AQ14152 1382 aaKnown RBP21.73■■□□□ 1.07
TRAF4-212ENST00000498540 THSD7AQ9UPZ6 1657 aa21.72■■□□□ 1.07
TRAF4-212ENST00000498540 BAG6P46379 1132 aa21.72■■□□□ 1.07
TRAF4-212ENST00000498540 RAB3GAP2Q9H2M9 1393 aa21.72■■□□□ 1.07
TRAF4-212ENST00000498540 PSDA5PKW4 1024 aaPredicted RBP21.71■■□□□ 1.07
TRAF4-212ENST00000498540 ARHGEF28Q8N1W1 1705 aaKnown RBP21.7■■□□□ 1.06
TRAF4-212ENST00000498540 TNS1Q9HBL0 1735 aaKnown RBP21.7■■□□□ 1.06
TRAF4-212ENST00000498540 WASLO00401 505 aaPredicted RBP21.7■■□□□ 1.06
TRAF4-212ENST00000498540 FAM182BQ5T319 152 aa21.7■■□□□ 1.06
TRAF4-212ENST00000498540 ITSN1Q15811 1721 aa21.69■■□□□ 1.06
TRAF4-212ENST00000498540 SPATA31A5Q5VU36 1347 aa21.69■■□□□ 1.06
TRAF4-212ENST00000498540 SPATA31A7Q8IWB4 1347 aa21.69■■□□□ 1.06
TRAF4-212ENST00000498540 KDM2AQ9Y2K7 1162 aa21.68■■□□□ 1.06
TRAF4-212ENST00000498540 PHRF1Q9P1Y6 1649 aaKnown RBP21.67■■□□□ 1.06
TRAF4-212ENST00000498540 ATP7BP35670 1465 aa21.67■■□□□ 1.06
TRAF4-212ENST00000498540 NGDNQ8NEJ9 315 aaKnown RBP21.67■■□□□ 1.06
TRAF4-212ENST00000498540 PAK3O75914 559 aaPredicted RBP21.66■■□□□ 1.06
TRAF4-212ENST00000498540 HRCP23327 699 aa21.66■■□□□ 1.06
TRAF4-212ENST00000498540 EN1Q05925 392 aaPredicted RBP21.66■■□□□ 1.06
TRAF4-212ENST00000498540 DCAF11Q8TEB1 546 aa21.66■■□□□ 1.06
TRAF4-212ENST00000498540 PRDM11Q9NQV5 511 aa21.66■■□□□ 1.06
TRAF4-212ENST00000498540 DISP2A7MBM2 1401 aa21.63■■□□□ 1.05
TRAF4-212ENST00000498540 KIAA0232Q92628 1395 aa21.63■■□□□ 1.05
TRAF4-212ENST00000498540 TOPAZ1Q8N9V7 1692 aa21.62■■□□□ 1.05
TRAF4-212ENST00000498540 SPATA31A1Q5TZJ5 1347 aa21.6■■□□□ 1.05
TRAF4-212ENST00000498540 CHRNA2Q15822 529 aa21.6■■□□□ 1.05
TRAF4-212ENST00000498540 NUDT16Q96DE0 195 aaKnown RBP21.6■■□□□ 1.05
TRAF4-212ENST00000498540 R3HDM1Q15032 1099 aaKnown RBP21.58■■□□□ 1.05
TRAF4-212ENST00000498540 EZH2Q15910 746 aaKnown RBP21.57■■□□□ 1.04
TRAF4-212ENST00000498540 NUTM2GQ5VZR2 741 aa21.57■■□□□ 1.04
TRAF4-212ENST00000498540 STRN4Q9NRL3 753 aa21.57■■□□□ 1.04
TRAF4-212ENST00000498540 NRKQ7Z2Y5 1582 aa21.57■■□□□ 1.04
TRAF4-212ENST00000498540 ZC3H6P61129 1189 aaKnown RBP21.56■■□□□ 1.04
TRAF4-212ENST00000498540 STAC3Q96MF2 364 aa21.55■■□□□ 1.04
TRAF4-212ENST00000498540 POLR3AO14802 1390 aaPredicted RBP21.55■■□□□ 1.04
TRAF4-212ENST00000498540 TRIM37O94972 964 aa21.54■■□□□ 1.04
TRAF4-212ENST00000498540 CDK19Q9BWU1 502 aa21.54■■□□□ 1.04
TRAF4-212ENST00000498540 FAM196AQ6ZSG2 479 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 CAMKK2Q96RR4 588 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 USP35Q9P2H5 1018 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 SSH2Q76I76 1423 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 LMO7Q8WWI1 1683 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 RREB1Q92766 1687 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 ACEP12821 1306 aa21.53■■□□□ 1.04
TRAF4-212ENST00000498540 CAMTA1Q9Y6Y1 1673 aa21.52■■□□□ 1.04
TRAF4-212ENST00000498540 KIAA1210Q9ULL0 1709 aa21.51■■□□□ 1.03
TRAF4-212ENST00000498540 NUP188Q5SRE5 1749 aa21.5■■□□□ 1.03
TRAF4-212ENST00000498540 NBPF8Q3BBV2 869 aa21.5■■□□□ 1.03
TRAF4-212ENST00000498540 APBA3O96018 575 aa21.48■■□□□ 1.03
TRAF4-212ENST00000498540 LARP1Q6PKG0 1096 aaKnown RBP21.48■■□□□ 1.03
TRAF4-212ENST00000498540 BARGINQ6ZT62 677 aa21.48■■□□□ 1.03
TRAF4-212ENST00000498540 CCDC61Q9Y6R9 512 aa21.48■■□□□ 1.03
TRAF4-212ENST00000498540 PARD3Q8TEW0 1356 aa21.48■■□□□ 1.03
TRAF4-212ENST00000498540 PLEKHG3A1L390 1219 aa21.47■■□□□ 1.03
TRAF4-212ENST00000498540 EVA1CP58658 441 aa21.47■■□□□ 1.03
TRAF4-212ENST00000498540 USP19O94966 1318 aa21.47■■□□□ 1.03
TRAF4-212ENST00000498540 CPDO75976 1380 aa21.47■■□□□ 1.03
TRAF4-212ENST00000498540 ABTB2Q8N961 1025 aa21.46■■□□□ 1.03
TRAF4-212ENST00000498540 PDE3BQ13370 1112 aa21.45■■□□□ 1.02
TRAF4-212ENST00000498540 PARP4Q9UKK3 1724 aaKnown RBP21.45■■□□□ 1.02
TRAF4-212ENST00000498540 TCP11L2Q8N4U5 519 aa21.43■■□□□ 1.02
TRAF4-212ENST00000498540 PPIP5K1Q6PFW1 1433 aa21.43■■□□□ 1.02
TRAF4-212ENST00000498540 COL5A2P05997 1499 aaPredicted RBP21.42■■□□□ 1.02
TRAF4-212ENST00000498540 NBPF1Q3BBV0 1214 aa21.42■■□□□ 1.02
TRAF4-212ENST00000498540 QRICH2Q9H0J4 1663 aa21.4■■□□□ 1.02
TRAF4-212ENST00000498540 PEAK1Q9H792 1746 aa21.39■■□□□ 1.01
TRAF4-212ENST00000498540 GCP02774 474 aa21.39■■□□□ 1.01
TRAF4-212ENST00000498540 SRPK2P78362 688 aaKnown RBP21.39■■□□□ 1.01
TRAF4-212ENST00000498540 NLRP13Q86W25 1043 aa21.38■■□□□ 1.01
TRAF4-212ENST00000498540 THRAP3Q9Y2W1 955 aaKnown RBP21.38■■□□□ 1.01
TRAF4-212ENST00000498540 LRRC37A3O60309 1634 aa21.37■■□□□ 1.01
TRAF4-212ENST00000498540 CABP2Q9NPB3 220 aa21.37■■□□□ 1.01
TRAF4-212ENST00000498540 CENPJQ9HC77 1338 aaPredicted RBP21.36■■□□□ 1.01
TRAF4-212ENST00000498540 CRB1P82279 1406 aa21.36■■□□□ 1.01
TRAF4-212ENST00000498540 SBF2Q86WG5 1849 aa21.36■■□□□ 1.01
TRAF4-212ENST00000498540 SLIT3O75094 1523 aa21.35■■□□□ 1.01
TRAF4-212ENST00000498540 NBPF14Q5TI25 921 aa21.35■■□□□ 1.01
TRAF4-212ENST00000498540 PIK3C2AO00443 1686 aa21.34■■□□□ 1.01
TRAF4-212ENST00000498540 WNK3Q9BYP7 1800 aa21.34■■□□□ 1.01
TRAF4-212ENST00000498540 RGPD3A6NKT7 1758 aaPredicted RBP21.34■■□□□ 1.01
TRAF4-212ENST00000498540 RGPD4Q7Z3J3 1758 aa21.34■■□□□ 1.01
TRAF4-212ENST00000498540 USP6P35125 1406 aa21.34■■□□□ 1.01
TRAF4-212ENST00000498540 COL18A1P39060 1754 aa21.33■■□□□ 1.01
TRAF4-212ENST00000498540 OVOS2A0A0G2JMS6 1433 aa21.33■■□□□ 1.01
TRAF4-212ENST00000498540 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1.01
TRAF4-212ENST00000498540 OVOS2Q6IE36 1432 aa21.33■■□□□ 1.01
TRAF4-212ENST00000498540 ZBTB7CA1YPR0 619 aa21.33■■□□□ 1.01
TRAF4-212ENST00000498540 BRD4O60885 1362 aaPredicted RBP21.33■■□□□ 1
TRAF4-212ENST00000498540 AATKQ6ZMQ8 1374 aa21.32■■□□□ 1
TRAF4-212ENST00000498540 NLRP6P59044 892 aa21.3■■□□□ 1
TRAF4-212ENST00000498540 CABP1Q9NZU7 370 aa21.3■■□□□ 1
TRAF4-212ENST00000498540 SPON1Q9HCB6 807 aa21.28■■□□□ 1
TRAF4-212ENST00000498540 AKAP12Q02952 1782 aa21.28■■□□□ 1
TRAF4-212ENST00000498540 RGPD5Q99666 1765 aa21.28■■□□□ 1
TRAF4-212ENST00000498540 C11orf95C9JLR9 678 aaPredicted RBP21.27■■□□□ 1
TRAF4-212ENST00000498540 PTF1AQ7RTS3 328 aa21.27■■□□□ 1
TRAF4-212ENST00000498540 CASZ1Q86V15 1759 aa21.27■■□□□ 1
TRAF4-212ENST00000498540 KCNQ2O43526 872 aa21.26■□□□□ 0.99
TRAF4-212ENST00000498540 DDB1Q16531 1140 aa21.26■□□□□ 0.99
TRAF4-212ENST00000498540 TOM1L2Q6ZVM7 507 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms