RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 PDE4DIPQ5VU43 2346 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 NLRP6P59044 892 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 C9orf131Q5VYM1 1079 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 RAPGEF4Q8WZA2 1011 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 ATP10DQ9P241 1426 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 UGGT1Q9NYU2 1555 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 FNBP4Q8N3X1 1017 aaPredicted RBP6.7□□□□□ -1.34
USP54-216ENST00000498143 PLEKHH2Q8IVE3 1493 aa6.7□□□□□ -1.34
USP54-216ENST00000498143 RFC4P35249 363 aa6.69□□□□□ -1.34
USP54-216ENST00000498143 PRPF38BQ5VTL8 546 aaKnown RBP6.69□□□□□ -1.34
USP54-216ENST00000498143 A2MP01023 1474 aa6.69□□□□□ -1.34
USP54-216ENST00000498143 DALRD3Q5D0E6 543 aaKnown RBP6.69□□□□□ -1.34
USP54-216ENST00000498143 NMRK2Q9NPI5 230 aa6.69□□□□□ -1.34
USP54-216ENST00000498143 KDM5DQ9BY66 1539 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 ATP10BO94823 1461 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 RGS12O14924 1447 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 PLCD4Q9BRC7 762 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 BCL2L13Q9BXK5 485 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 GJA3Q9Y6H8 435 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 HCN4Q9Y3Q4 1203 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 LRRC7Q96NW7 1537 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 ATXN8OSP0DMR3 200 aa6.68□□□□□ -1.34
USP54-216ENST00000498143 KIF13AQ9H1H9 1805 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 TTC37Q6PGP7 1564 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 FAM122AQ96E09 287 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 RBM42Q9BTD8 480 aaKnown RBP6.67□□□□□ -1.34
USP54-216ENST00000498143 MYCP01106 439 aaPredicted RBP6.67□□□□□ -1.34
USP54-216ENST00000498143 AKAP4Q5JQC9 854 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 MPNDQ8N594 471 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 TMC1Q8TDI8 760 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 ANKRD30BQ9BXX2 1392 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 ZPR1O75312 459 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 CALRP27797 417 aaKnown RBP6.67□□□□□ -1.34
USP54-216ENST00000498143 RSPH6AQ9H0K4 717 aa6.67□□□□□ -1.34
USP54-216ENST00000498143 ARHGEF10O15013 1369 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 NLRP1Q9C000 1473 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 ACEP12821 1306 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 AMPHP49418 695 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 CA12O43570 354 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 PRDM10Q9NQV6 1147 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 RNF216Q9NWF9 866 aaPredicted RBP6.66□□□□□ -1.34
USP54-216ENST00000498143 PIM2Q9P1W9 311 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 CUL7Q14999 1698 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 NF2P35240 595 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 EIF6P56537 245 aaKnown RBP6.66□□□□□ -1.34
USP54-216ENST00000498143 UIMC1Q96RL1 719 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 KDM2AQ9Y2K7 1162 aa6.66□□□□□ -1.34
USP54-216ENST00000498143 CCAR1Q8IX12 1150 aaKnown RBP6.65□□□□□ -1.34
USP54-216ENST00000498143 CIZ1Q9ULV3 898 aaPredicted RBP6.65□□□□□ -1.34
USP54-216ENST00000498143 VASPP50552 380 aaPredicted RBP6.65□□□□□ -1.34
USP54-216ENST00000498143 EIF4G2P78344 907 aaKnown RBP eCLIP6.65□□□□□ -1.34
USP54-216ENST00000498143 MAP3K9P80192 1104 aa6.65□□□□□ -1.34
USP54-216ENST00000498143 TMEM2Q9UHN6 1383 aa6.65□□□□□ -1.35
USP54-216ENST00000498143 SKIV2LQ15477 1246 aaKnown RBP6.65□□□□□ -1.35
USP54-216ENST00000498143 CDK12Q9NYV4 1490 aaPredicted RBP6.65□□□□□ -1.35
USP54-216ENST00000498143 TMEM265A0A087WTH1 108 aa6.64□□□□□ -1.35
USP54-216ENST00000498143 PLCD3Q8N3E9 789 aa6.64□□□□□ -1.35
USP54-216ENST00000498143 ERFEQ4G0M1 354 aa6.64□□□□□ -1.35
USP54-216ENST00000498143 CSPP1Q1MSJ5 1256 aa6.64□□□□□ -1.35
USP54-216ENST00000498143 GPR101Q96P66 508 aaPredicted RBP6.64□□□□□ -1.35
USP54-216ENST00000498143 DHX29Q7Z478 1369 aaKnown RBP6.64□□□□□ -1.35
USP54-216ENST00000498143 RBM25P49756 843 aaKnown RBP6.64□□□□□ -1.35
USP54-216ENST00000498143 KIF22Q14807 665 aa6.64□□□□□ -1.35
USP54-216ENST00000498143 BBXQ8WY36 941 aaPredicted RBP6.64□□□□□ -1.35
USP54-216ENST00000498143 IGSF1Q8N6C5 1336 aa6.64□□□□□ -1.35
USP54-216ENST00000498143 SMARCC1Q92922 1105 aaPredicted RBP6.63□□□□□ -1.35
USP54-216ENST00000498143 PTCH1Q13635 1447 aa6.63□□□□□ -1.35
USP54-216ENST00000498143 ABCC1P33527 1531 aa6.63□□□□□ -1.35
USP54-216ENST00000498143 SALL2Q9Y467 1007 aaPredicted RBP6.63□□□□□ -1.35
USP54-216ENST00000498143 CD2APQ9Y5K6 639 aa6.63□□□□□ -1.35
USP54-216ENST00000498143 PTPRZ1P23471 2315 aaPredicted RBP6.63□□□□□ -1.35
USP54-216ENST00000498143 TSKSQ9UJT2 592 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 ARHGEF40Q8TER5 1519 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 PREX1Q8TCU6 1659 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 TMEM88BA6NKF7 163 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 AAMPQ13685 434 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 CHADLQ6NUI6 762 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 PNPLA6Q8IY17 1366 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 CDK13Q14004 1512 aaKnown RBP6.62□□□□□ -1.35
USP54-216ENST00000498143 ANP32AP39687 249 aaKnown RBP6.62□□□□□ -1.35
USP54-216ENST00000498143 TCIRG1Q13488 830 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 TSHZ2Q9NRE2 1034 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 PRKAG2Q9UGJ0 569 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 SETBP1Q9Y6X0 1596 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 RAD21O60216 631 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 HSP90AA1P07900 732 aaKnown RBP6.62□□□□□ -1.35
USP54-216ENST00000498143 HSP90AA2PQ14568 343 aaPredicted RBP6.62□□□□□ -1.35
USP54-216ENST00000498143 BCORL1Q5H9F3 1711 aa6.62□□□□□ -1.35
USP54-216ENST00000498143 TSPYL2Q9H2G4 693 aaPredicted RBP6.62□□□□□ -1.35
USP54-216ENST00000498143 PBRM1Q86U86 1689 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 RNF17Q9BXT8 1623 aaKnown RBP6.61□□□□□ -1.35
USP54-216ENST00000498143 USP47Q96K76 1375 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 AEBP1Q8IUX7 1158 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 RTCBQ9Y3I0 505 aaKnown RBP6.61□□□□□ -1.35
USP54-216ENST00000498143 CFAP74Q9C0B2 1584 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 SPDYE4A6NLX3 237 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 MPRIPQ6WCQ1 1025 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 NLGN1Q8N2Q7 840 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 CAMKK2Q96RR4 588 aa6.61□□□□□ -1.35
USP54-216ENST00000498143 OTUD7BQ6GQQ9 843 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms