RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ADGRB2O60241 1585 aa24.71■■□□□ 1.55
VIM-208ENST00000497849 DHX57Q6P158 1386 aaKnown RBP24.71■■□□□ 1.55
VIM-208ENST00000497849 DLC1Q96QB1 1528 aa24.67■■□□□ 1.54
VIM-208ENST00000497849 TRIM37O94972 964 aa24.67■■□□□ 1.54
VIM-208ENST00000497849 MPHOSPH9Q99550 1183 aa24.66■■□□□ 1.54
VIM-208ENST00000497849 ACIN1Q9UKV3 1341 aaKnown RBP24.65■■□□□ 1.54
VIM-208ENST00000497849 YY1P25490 414 aa24.65■■□□□ 1.54
VIM-208ENST00000497849 RREB1Q92766 1687 aa24.65■■□□□ 1.54
VIM-208ENST00000497849 GPRASP1Q5JY77 1395 aa24.65■■□□□ 1.54
VIM-208ENST00000497849 SPATA31A1Q5TZJ5 1347 aa24.64■■□□□ 1.54
VIM-208ENST00000497849 PRR36Q9H6K5 1346 aa24.64■■□□□ 1.54
VIM-208ENST00000497849 FAM196AQ6ZSG2 479 aa24.64■■□□□ 1.54
VIM-208ENST00000497849 POGKQ9P215 609 aa24.63■■□□□ 1.53
VIM-208ENST00000497849 PARD3Q8TEW0 1356 aa24.63■■□□□ 1.53
VIM-208ENST00000497849 NUP188Q5SRE5 1749 aa24.62■■□□□ 1.53
VIM-208ENST00000497849 PRDM11Q9NQV5 511 aa24.62■■□□□ 1.53
VIM-208ENST00000497849 APBA3O96018 575 aa24.61■■□□□ 1.53
VIM-208ENST00000497849 HIRIP3Q9BW71 556 aaPredicted RBP24.61■■□□□ 1.53
VIM-208ENST00000497849 TULP4Q9NRJ4 1543 aa24.59■■□□□ 1.53
VIM-208ENST00000497849 ADGRB1O14514 1584 aa24.59■■□□□ 1.53
VIM-208ENST00000497849 KIAA0232Q92628 1395 aa24.58■■□□□ 1.53
VIM-208ENST00000497849 PAK3O75914 559 aaPredicted RBP24.56■■□□□ 1.52
VIM-208ENST00000497849 CHRNA2Q15822 529 aa24.56■■□□□ 1.52
VIM-208ENST00000497849 PHRF1Q9P1Y6 1649 aaKnown RBP24.56■■□□□ 1.52
VIM-208ENST00000497849 MINK1Q8N4C8 1332 aaPredicted RBP24.56■■□□□ 1.52
VIM-208ENST00000497849 STRN4Q9NRL3 753 aa24.55■■□□□ 1.52
VIM-208ENST00000497849 EIF3AQ14152 1382 aaKnown RBP24.54■■□□□ 1.52
VIM-208ENST00000497849 NGDNQ8NEJ9 315 aaKnown RBP24.54■■□□□ 1.52
VIM-208ENST00000497849 TRAK1Q9UPV9 953 aa24.54■■□□□ 1.52
VIM-208ENST00000497849 WASLO00401 505 aaPredicted RBP24.53■■□□□ 1.52
VIM-208ENST00000497849 USP35Q9P2H5 1018 aa24.52■■□□□ 1.52
VIM-208ENST00000497849 NBPF8Q3BBV2 869 aa24.51■■□□□ 1.51
VIM-208ENST00000497849 NBPF14Q5TI25 921 aa24.51■■□□□ 1.51
VIM-208ENST00000497849 BARGINQ6ZT62 677 aa24.51■■□□□ 1.51
VIM-208ENST00000497849 ZC3H6P61129 1189 aaKnown RBP24.49■■□□□ 1.51
VIM-208ENST00000497849 PDE3BQ13370 1112 aa24.49■■□□□ 1.51
VIM-208ENST00000497849 SSH2Q76I76 1423 aa24.49■■□□□ 1.51
VIM-208ENST00000497849 SPON1Q9HCB6 807 aa24.48■■□□□ 1.51
VIM-208ENST00000497849 ITSN1Q15811 1721 aa24.47■■□□□ 1.51
VIM-208ENST00000497849 KCNQ2O43526 872 aa24.47■■□□□ 1.51
VIM-208ENST00000497849 PPP1R1BQ9UD71 204 aaPredicted RBP24.47■■□□□ 1.51
VIM-208ENST00000497849 ATP7BP35670 1465 aa24.46■■□□□ 1.51
VIM-208ENST00000497849 CAMTA1Q9Y6Y1 1673 aa24.46■■□□□ 1.51
VIM-208ENST00000497849 NINLQ9Y2I6 1382 aa24.45■■□□□ 1.5
VIM-208ENST00000497849 NUTM2GQ5VZR2 741 aa24.45■■□□□ 1.5
VIM-208ENST00000497849 LARP1Q6PKG0 1096 aaKnown RBP24.44■■□□□ 1.5
VIM-208ENST00000497849 EVA1CP58658 441 aa24.43■■□□□ 1.5
VIM-208ENST00000497849 LMO7Q8WWI1 1683 aa24.43■■□□□ 1.5
VIM-208ENST00000497849 NRKQ7Z2Y5 1582 aa24.42■■□□□ 1.5
VIM-208ENST00000497849 TCP11L2Q8N4U5 519 aa24.42■■□□□ 1.5
VIM-208ENST00000497849 NUDT16Q96DE0 195 aaKnown RBP24.42■■□□□ 1.5
VIM-208ENST00000497849 PARP4Q9UKK3 1724 aaKnown RBP24.41■■□□□ 1.5
VIM-208ENST00000497849 DCAF8L1A6NGE4 600 aa24.4■■□□□ 1.5
VIM-208ENST00000497849 ARHGEF28Q8N1W1 1705 aaKnown RBP24.4■■□□□ 1.5
VIM-208ENST00000497849 RGPD3A6NKT7 1758 aaPredicted RBP24.38■■□□□ 1.49
VIM-208ENST00000497849 RGPD4Q7Z3J3 1758 aa24.38■■□□□ 1.49
VIM-208ENST00000497849 CASZ1Q86V15 1759 aa24.38■■□□□ 1.49
VIM-208ENST00000497849 PEAK1Q9H792 1746 aa24.38■■□□□ 1.49
VIM-208ENST00000497849 TOPAZ1Q8N9V7 1692 aa24.37■■□□□ 1.49
VIM-208ENST00000497849 POLR3AO14802 1390 aaPredicted RBP24.37■■□□□ 1.49
VIM-208ENST00000497849 CPDO75976 1380 aa24.37■■□□□ 1.49
VIM-208ENST00000497849 UTRNP46939 3433 aa24.37■■□□□ 1.49
VIM-208ENST00000497849 SBF2Q86WG5 1849 aa24.37■■□□□ 1.49
VIM-208ENST00000497849 THRAP3Q9Y2W1 955 aaKnown RBP24.36■■□□□ 1.49
VIM-208ENST00000497849 ACEP12821 1306 aa24.35■■□□□ 1.49
VIM-208ENST00000497849 ANO8Q9HCE9 1232 aaPredicted RBP24.34■■□□□ 1.49
VIM-208ENST00000497849 KDM2AQ9Y2K7 1162 aa24.34■■□□□ 1.49
VIM-208ENST00000497849 USP19O94966 1318 aa24.33■■□□□ 1.48
VIM-208ENST00000497849 COL5A2P05997 1499 aaPredicted RBP24.32■■□□□ 1.48
VIM-208ENST00000497849 PLSCR1O15162 318 aa24.32■■□□□ 1.48
VIM-208ENST00000497849 CDK19Q9BWU1 502 aa24.32■■□□□ 1.48
VIM-208ENST00000497849 PDGFDQ9GZP0 370 aaPredicted RBP24.32■■□□□ 1.48
VIM-208ENST00000497849 OVOS2A0A0G2JMS6 1433 aa24.31■■□□□ 1.48
VIM-208ENST00000497849 OVOS2A0A0J9YW53 1432 aa24.31■■□□□ 1.48
VIM-208ENST00000497849 OVOS2Q6IE36 1432 aa24.31■■□□□ 1.48
VIM-208ENST00000497849 ABTB2Q8N961 1025 aa24.31■■□□□ 1.48
VIM-208ENST00000497849 DCAF11Q8TEB1 546 aa24.31■■□□□ 1.48
VIM-208ENST00000497849 C11orf95C9JLR9 678 aaPredicted RBP24.3■■□□□ 1.48
VIM-208ENST00000497849 LRRC37A3O60309 1634 aa24.29■■□□□ 1.48
VIM-208ENST00000497849 PLEKHG3A1L390 1219 aa24.29■■□□□ 1.48
VIM-208ENST00000497849 PTF1AQ7RTS3 328 aa24.29■■□□□ 1.48
VIM-208ENST00000497849 ZNF784Q8NCA9 323 aaPredicted RBP24.29■■□□□ 1.48
VIM-208ENST00000497849 CCDC61Q9Y6R9 512 aa24.29■■□□□ 1.48
VIM-208ENST00000497849 MYOM1P52179 1685 aa24.29■■□□□ 1.48
VIM-208ENST00000497849 CRB1P82279 1406 aa24.27■■□□□ 1.48
VIM-208ENST00000497849 GCP02774 474 aa24.27■■□□□ 1.48
VIM-208ENST00000497849 PTGER2P43116 358 aa24.26■■□□□ 1.47
VIM-208ENST00000497849 PROM2Q8N271 834 aa24.26■■□□□ 1.47
VIM-208ENST00000497849 ZBTB7AO95365 584 aa24.25■■□□□ 1.47
VIM-208ENST00000497849 BCL11BQ9C0K0 894 aaPredicted RBP24.24■■□□□ 1.47
VIM-208ENST00000497849 NLRP13Q86W25 1043 aa24.23■■□□□ 1.47
VIM-208ENST00000497849 DDB1Q16531 1140 aa24.22■■□□□ 1.47
VIM-208ENST00000497849 STAC3Q96MF2 364 aa24.22■■□□□ 1.47
VIM-208ENST00000497849 WNK3Q9BYP7 1800 aa24.21■■□□□ 1.47
VIM-208ENST00000497849 CHD4Q14839 1912 aa24.2■■□□□ 1.46
VIM-208ENST00000497849 ATF5Q9Y2D1 282 aaPredicted RBP24.2■■□□□ 1.46
VIM-208ENST00000497849 COL18A1P39060 1754 aa24.19■■□□□ 1.46
VIM-208ENST00000497849 AATKQ6ZMQ8 1374 aa24.18■■□□□ 1.46
VIM-208ENST00000497849 MARCH10Q8NA82 808 aaPredicted RBP24.18■■□□□ 1.46
VIM-208ENST00000497849 SYT17Q9BSW7 474 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms