RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 MPHOSPH9Q99550 1183 aa9.88□□□□□ -0.83
HERC4-211ENST00000492996 SLAIN2Q9P270 581 aa9.87□□□□□ -0.83
HERC4-211ENST00000492996 CPSF1Q10570 1443 aaKnown RBP9.86□□□□□ -0.83
HERC4-211ENST00000492996 BRINP3Q76B58 766 aa9.86□□□□□ -0.83
HERC4-211ENST00000492996 UBAP1LF5GYI3 381 aa9.86□□□□□ -0.83
HERC4-211ENST00000492996 ANP32EQ9BTT0 268 aa9.85□□□□□ -0.83
HERC4-211ENST00000492996 LTN1O94822 1766 aa9.85□□□□□ -0.83
HERC4-211ENST00000492996 SLC4A1APQ9BWU0 796 aaKnown RBP9.84□□□□□ -0.83
HERC4-211ENST00000492996 C5P01031 1676 aa9.84□□□□□ -0.83
HERC4-211ENST00000492996 KIF24Q5T7B8 1368 aa9.83□□□□□ -0.84
HERC4-211ENST00000492996 ILDR2Q71H61 639 aa9.83□□□□□ -0.84
HERC4-211ENST00000492996 L3MBTL2Q969R5 705 aa9.82□□□□□ -0.84
HERC4-211ENST00000492996 SMG6Q86US8 1419 aaKnown RBP9.82□□□□□ -0.84
HERC4-211ENST00000492996 BLMP54132 1417 aaPredicted RBP9.81□□□□□ -0.84
HERC4-211ENST00000492996 SPATA31A3Q5VYP0 1347 aa9.81□□□□□ -0.84
HERC4-211ENST00000492996 CD163L1Q9NR16 1453 aa9.81□□□□□ -0.84
HERC4-211ENST00000492996 ATAD2Q6PL18 1390 aa9.8□□□□□ -0.84
HERC4-211ENST00000492996 DISP3Q9P2K9 1392 aa9.8□□□□□ -0.84
HERC4-211ENST00000492996 LRRC59Q96AG4 307 aaKnown RBP9.8□□□□□ -0.84
HERC4-211ENST00000492996 PLEKHG3A1L390 1219 aa9.79□□□□□ -0.84
HERC4-211ENST00000492996 ANP32CO43423 234 aa9.79□□□□□ -0.84
HERC4-211ENST00000492996 MAP3K5Q99683 1374 aa9.79□□□□□ -0.84
HERC4-211ENST00000492996 HSPA5P11021 654 aaKnown RBP9.79□□□□□ -0.84
HERC4-211ENST00000492996 AMOTL2Q9Y2J4 779 aa9.79□□□□□ -0.84
HERC4-211ENST00000492996 KIAA1551Q9HCM1 1747 aa9.79□□□□□ -0.84
HERC4-211ENST00000492996 NPHP3Q7Z494 1330 aa9.78□□□□□ -0.84
HERC4-211ENST00000492996 TUBGCP6Q96RT7 1819 aa9.78□□□□□ -0.84
HERC4-211ENST00000492996 NSD2O96028 1365 aa9.78□□□□□ -0.84
HERC4-211ENST00000492996 ZNF326Q5BKZ1 582 aaKnown RBP9.78□□□□□ -0.84
HERC4-211ENST00000492996 COL5A3P25940 1745 aaPredicted RBP9.77□□□□□ -0.84
HERC4-211ENST00000492996 TAF1LQ8IZX4 1826 aa9.77□□□□□ -0.85
HERC4-211ENST00000492996 ARFGEF2Q9Y6D5 1785 aa9.76□□□□□ -0.85
HERC4-211ENST00000492996 EIF4G2P78344 907 aaKnown RBP eCLIP9.75□□□□□ -0.85
HERC4-211ENST00000492996 NBPF8Q3BBV2 869 aa9.75□□□□□ -0.85
HERC4-211ENST00000492996 DLEC1Q9Y238 1755 aa9.75□□□□□ -0.85
HERC4-211ENST00000492996 MAP2P11137 1827 aaKnown RBP9.75□□□□□ -0.85
HERC4-211ENST00000492996 SLC24A1O60721 1099 aa9.74□□□□□ -0.85
HERC4-211ENST00000492996 PROSER2Q86WR7 435 aaPredicted RBP9.74□□□□□ -0.85
HERC4-211ENST00000492996 SIPA1L3O60292 1781 aaPredicted RBP9.74□□□□□ -0.85
HERC4-211ENST00000492996 VPS72Q15906 364 aa9.74□□□□□ -0.85
HERC4-211ENST00000492996 RTL1A6NKG5 1358 aa9.73□□□□□ -0.85
HERC4-211ENST00000492996 WASHC2AQ641Q2 1341 aa9.73□□□□□ -0.85
HERC4-211ENST00000492996 CNGB1Q14028 1251 aaPredicted RBP9.73□□□□□ -0.85
HERC4-211ENST00000492996 NRXN2Q9P2S2 1712 aa9.73□□□□□ -0.85
HERC4-211ENST00000492996 BARGINQ6ZT62 677 aa9.72□□□□□ -0.85
HERC4-211ENST00000492996 THRAP3Q9Y2W1 955 aaKnown RBP9.72□□□□□ -0.85
HERC4-211ENST00000492996 UBR2Q8IWV8 1755 aa9.72□□□□□ -0.85
HERC4-211ENST00000492996 OVOS2A0A0J9YW53 1432 aa9.72□□□□□ -0.85
HERC4-211ENST00000492996 OVOS2Q6IE36 1432 aa9.72□□□□□ -0.85
HERC4-211ENST00000492996 RGPD5Q99666 1765 aa9.72□□□□□ -0.85
HERC4-211ENST00000492996 POLR3GLQ9BT43 218 aa9.72□□□□□ -0.85
HERC4-211ENST00000492996 USP6P35125 1406 aa9.71□□□□□ -0.85
HERC4-211ENST00000492996 RBM6P78332 1123 aaKnown RBP9.71□□□□□ -0.86
HERC4-211ENST00000492996 COL5A2P05997 1499 aaPredicted RBP9.7□□□□□ -0.86
HERC4-211ENST00000492996 PLPPR3Q6T4P5 718 aa9.69□□□□□ -0.86
HERC4-211ENST00000492996 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.69□□□□□ -0.86
HERC4-211ENST00000492996 KDM2AQ9Y2K7 1162 aa9.69□□□□□ -0.86
HERC4-211ENST00000492996 SUPT16HQ9Y5B9 1047 aaKnown RBP9.69□□□□□ -0.86
HERC4-211ENST00000492996 CCER2I3L3R5 266 aa9.69□□□□□ -0.86
HERC4-211ENST00000492996 VIRMAQ69YN4 1812 aaKnown RBP9.68□□□□□ -0.86
HERC4-211ENST00000492996 ADGRF5Q8IZF2 1346 aa9.68□□□□□ -0.86
HERC4-211ENST00000492996 TOGARAM1Q9Y4F4 1720 aa9.68□□□□□ -0.86
HERC4-211ENST00000492996 MRC1P22897 1456 aa9.68□□□□□ -0.86
HERC4-211ENST00000492996 BCANQ96GW7 911 aa9.67□□□□□ -0.86
HERC4-211ENST00000492996 TTC21AQ8NDW8 1320 aa9.67□□□□□ -0.86
HERC4-211ENST00000492996 ATF3P18847 181 aa9.67□□□□□ -0.86
HERC4-211ENST00000492996 POTEAQ6S8J7 498 aa9.67□□□□□ -0.86
HERC4-211ENST00000492996 BTAF1O14981 1849 aa9.67□□□□□ -0.86
HERC4-211ENST00000492996 PSME1Q06323 249 aa9.66□□□□□ -0.86
HERC4-211ENST00000492996 PLEKHH1Q9ULM0 1364 aa9.65□□□□□ -0.86
HERC4-211ENST00000492996 BRCA1P38398 1863 aaKnown RBP9.65□□□□□ -0.86
HERC4-211ENST00000492996 TNS2Q63HR2 1409 aa9.65□□□□□ -0.86
HERC4-211ENST00000492996 EDC4Q6P2E9 1401 aaKnown RBP9.65□□□□□ -0.86
HERC4-211ENST00000492996 UPF1Q92900 1129 aaKnown RBP eCLIP9.65□□□□□ -0.86
HERC4-211ENST00000492996 TRPC5Q9UL62 973 aaPredicted RBP9.65□□□□□ -0.86
HERC4-211ENST00000492996 MYT1LQ9UL68 1186 aa9.65□□□□□ -0.86
HERC4-211ENST00000492996 HNRNPUQ00839 825 aaKnown RBP eCLIP9.64□□□□□ -0.87
HERC4-211ENST00000492996 CCDC7Q96M83 1385 aa9.64□□□□□ -0.87
HERC4-211ENST00000492996 LAMB1P07942 1786 aa9.64□□□□□ -0.87
HERC4-211ENST00000492996 CCDC184Q52MB2 194 aa9.64□□□□□ -0.87
HERC4-211ENST00000492996 HMGB2P26583 209 aaKnown RBP9.64□□□□□ -0.87
HERC4-211ENST00000492996 RGL3Q3MIN7 710 aa9.64□□□□□ -0.87
HERC4-211ENST00000492996 KIF7Q2M1P5 1343 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 DCAF11Q8TEB1 546 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 SPATA31A5Q5VU36 1347 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 SPATA31A7Q8IWB4 1347 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 FKBP8Q14318 412 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 DOT1LQ8TEK3 1739 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 DUOX1Q9NRD9 1551 aa9.63□□□□□ -0.87
HERC4-211ENST00000492996 INSRP06213 1382 aa9.62□□□□□ -0.87
HERC4-211ENST00000492996 ITGB4P16144 1822 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 FAM9BQ8IZU0 186 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 CRB1P82279 1406 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 UNC5CLQ8IV45 518 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 CDCA7Q9BWT1 371 aaPredicted RBP9.61□□□□□ -0.87
HERC4-211ENST00000492996 CARD11Q9BXL7 1154 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 OVOS2A0A0G2JMS6 1433 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 BCORQ6W2J9 1755 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 SCN11AQ9UI33 1791 aa9.61□□□□□ -0.87
HERC4-211ENST00000492996 USP47Q96K76 1375 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms