RNA–Protein interactions for RNA: ENST00000491467.1

SRGAP3-210, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-210ENST00000491467 FAM98CQ17RN3 349 aaKnown RBP16.43■□□□□ 0.22
SRGAP3-210ENST00000491467 NWD2Q9ULI1 1742 aa16.42■□□□□ 0.22
SRGAP3-210ENST00000491467 TMEM131LA2VDJ0 1609 aa16.42■□□□□ 0.22
SRGAP3-210ENST00000491467 TRIM37O94972 964 aa16.42■□□□□ 0.22
SRGAP3-210ENST00000491467 PRELPP51888 382 aa16.42■□□□□ 0.22
SRGAP3-210ENST00000491467 PARD3Q8TEW0 1356 aa16.41■□□□□ 0.22
SRGAP3-210ENST00000491467 MYOM1P52179 1685 aa16.41■□□□□ 0.22
SRGAP3-210ENST00000491467 HSPA6P17066 643 aa16.41■□□□□ 0.22
SRGAP3-210ENST00000491467 IFT172Q9UG01 1749 aa16.41■□□□□ 0.22
SRGAP3-210ENST00000491467 FAM83GA6ND36 823 aa16.4■□□□□ 0.22
SRGAP3-210ENST00000491467 RGL3Q3MIN7 710 aa16.4■□□□□ 0.22
SRGAP3-210ENST00000491467 USP32Q8NFA0 1604 aa16.39■□□□□ 0.21
SRGAP3-210ENST00000491467 XPCQ01831 940 aaPredicted RBP16.39■□□□□ 0.21
SRGAP3-210ENST00000491467 HAP1P54257 671 aaPredicted RBP16.38■□□□□ 0.21
SRGAP3-210ENST00000491467 COL13A1Q5TAT6 717 aaPredicted RBP16.37■□□□□ 0.21
SRGAP3-210ENST00000491467 SYT17Q9BSW7 474 aa16.37■□□□□ 0.21
SRGAP3-210ENST00000491467 PRKRIP1Q9H875 184 aaPredicted RBP16.37■□□□□ 0.21
SRGAP3-210ENST00000491467 NPHP3Q7Z494 1330 aa16.37■□□□□ 0.21
SRGAP3-210ENST00000491467 KTN1Q86UP2 1357 aaKnown RBP16.37■□□□□ 0.21
SRGAP3-210ENST00000491467 SLC24A1O60721 1099 aa16.36■□□□□ 0.21
SRGAP3-210ENST00000491467 SHANK3Q9BYB0 1731 aa16.36■□□□□ 0.21
SRGAP3-210ENST00000491467 ST20-MTHFSA0A0A6YYL1 179 aa16.35■□□□□ 0.21
SRGAP3-210ENST00000491467 FHDC1Q9C0D6 1143 aaPredicted RBP16.35■□□□□ 0.21
SRGAP3-210ENST00000491467 TNS4Q8IZW8 715 aa16.34■□□□□ 0.21
SRGAP3-210ENST00000491467 PXDNQ92626 1479 aa16.34■□□□□ 0.21
SRGAP3-210ENST00000491467 PLEKHG5O94827 1062 aa16.32■□□□□ 0.2
SRGAP3-210ENST00000491467 GPR162Q16538 588 aa16.32■□□□□ 0.2
SRGAP3-210ENST00000491467 ESCO1Q5FWF5 840 aa16.32■□□□□ 0.2
SRGAP3-210ENST00000491467 PPLO60437 1756 aa16.31■□□□□ 0.2
SRGAP3-210ENST00000491467 CASZ1Q86V15 1759 aa16.31■□□□□ 0.2
SRGAP3-210ENST00000491467 FOXO3O43524 673 aa16.31■□□□□ 0.2
SRGAP3-210ENST00000491467 DLC1Q96QB1 1528 aa16.3■□□□□ 0.2
SRGAP3-210ENST00000491467 ZBTB7AO95365 584 aa16.3■□□□□ 0.2
SRGAP3-210ENST00000491467 FAM196AQ6ZSG2 479 aa16.3■□□□□ 0.2
SRGAP3-210ENST00000491467 RPGRIP1LQ68CZ1 1315 aa16.29■□□□□ 0.2
SRGAP3-210ENST00000491467 NBPF1Q3BBV0 1214 aa16.29■□□□□ 0.2
SRGAP3-210ENST00000491467 ATF5Q9Y2D1 282 aaPredicted RBP16.29■□□□□ 0.2
SRGAP3-210ENST00000491467 NRXN3Q9Y4C0 1643 aa16.28■□□□□ 0.2
SRGAP3-210ENST00000491467 TMF1P82094 1093 aa16.27■□□□□ 0.2
SRGAP3-210ENST00000491467 NRXN1Q9ULB1 1477 aa16.27■□□□□ 0.19
SRGAP3-210ENST00000491467 METP08581 1390 aa16.26■□□□□ 0.19
SRGAP3-210ENST00000491467 EIF3AQ14152 1382 aaKnown RBP16.26■□□□□ 0.19
SRGAP3-210ENST00000491467 NRAPQ86VF7 1730 aa16.26■□□□□ 0.19
SRGAP3-210ENST00000491467 PTGER2P43116 358 aa16.26■□□□□ 0.19
SRGAP3-210ENST00000491467 CDCA8Q53HL2 280 aa16.26■□□□□ 0.19
SRGAP3-210ENST00000491467 RALBP1Q15311 655 aa16.25■□□□□ 0.19
SRGAP3-210ENST00000491467 CABLES1Q8TDN4 633 aa16.25■□□□□ 0.19
SRGAP3-210ENST00000491467 LRPPRCP42704 1394 aaKnown RBP16.25■□□□□ 0.19
SRGAP3-210ENST00000491467 TESK2Q96S53 571 aa16.24■□□□□ 0.19
SRGAP3-210ENST00000491467 PDGFDQ9GZP0 370 aaPredicted RBP16.24■□□□□ 0.19
SRGAP3-210ENST00000491467 THSD7AQ9UPZ6 1657 aa16.24■□□□□ 0.19
SRGAP3-210ENST00000491467 PELP1Q8IZL8 1130 aaKnown RBP16.23■□□□□ 0.19
SRGAP3-210ENST00000491467 SPATA31A3Q5VYP0 1347 aa16.22■□□□□ 0.19
SRGAP3-210ENST00000491467 MRS2Q9HD23 443 aa16.22■□□□□ 0.19
SRGAP3-210ENST00000491467 POLR3GLQ9BT43 218 aa16.21■□□□□ 0.19
SRGAP3-210ENST00000491467 GPBP1L1Q9HC44 474 aaPredicted RBP16.2■□□□□ 0.18
SRGAP3-210ENST00000491467 BTG4Q9NY30 223 aa16.2■□□□□ 0.18
SRGAP3-210ENST00000491467 ABCA3Q99758 1704 aa16.19■□□□□ 0.18
SRGAP3-210ENST00000491467 BRD4O60885 1362 aaPredicted RBP16.18■□□□□ 0.18
SRGAP3-210ENST00000491467 APLP1P51693 650 aa16.17■□□□□ 0.18
SRGAP3-210ENST00000491467 SPATA31A5Q5VU36 1347 aa16.17■□□□□ 0.18
SRGAP3-210ENST00000491467 SPATA31A7Q8IWB4 1347 aa16.17■□□□□ 0.18
SRGAP3-210ENST00000491467 MYBBP1AQ9BQG0 1328 aaKnown RBP16.17■□□□□ 0.18
SRGAP3-210ENST00000491467 NEXMIFQ5QGS0 1516 aa16.16■□□□□ 0.18
SRGAP3-210ENST00000491467 HNRNPUQ00839 825 aaKnown RBP eCLIP16.16■□□□□ 0.18
SRGAP3-210ENST00000491467 ANO8Q9HCE9 1232 aaPredicted RBP16.16■□□□□ 0.18
SRGAP3-210ENST00000491467 ATP10DQ9P241 1426 aa16.16■□□□□ 0.18
SRGAP3-210ENST00000491467 SBNO2Q9Y2G9 1366 aa16.15■□□□□ 0.18
SRGAP3-210ENST00000491467 NUTM2FA1L443 756 aa16.15■□□□□ 0.18
SRGAP3-210ENST00000491467 PER1O15534 1290 aaPredicted RBP16.15■□□□□ 0.18
SRGAP3-210ENST00000491467 DNAJC5GQ8N7S2 189 aa16.15■□□□□ 0.18
SRGAP3-210ENST00000491467 VGFO15240 615 aaPredicted RBP16.14■□□□□ 0.17
SRGAP3-210ENST00000491467 LMOD2Q6P5Q4 547 aa16.14■□□□□ 0.17
SRGAP3-210ENST00000491467 KRT28Q7Z3Y7 464 aa16.14■□□□□ 0.17
SRGAP3-210ENST00000491467 ARXQ96QS3 562 aa16.14■□□□□ 0.17
SRGAP3-210ENST00000491467 PIK3C2GO75747 1445 aa16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 PDE3BQ13370 1112 aa16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 CCDC184Q52MB2 194 aa16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 ZNF526Q8TF50 670 aaPredicted RBP16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 BCL11BQ9C0K0 894 aaPredicted RBP16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 C14orf93Q9H972 538 aaKnown RBP16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 ZBED9Q6R2W3 1325 aa16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 ADGRF5Q8IZF2 1346 aa16.13■□□□□ 0.17
SRGAP3-210ENST00000491467 TMC1Q8TDI8 760 aa16.12■□□□□ 0.17
SRGAP3-210ENST00000491467 WWC3Q9ULE0 1092 aa16.12■□□□□ 0.17
SRGAP3-210ENST00000491467 COL14A1Q05707 1796 aaKnown RBP16.12■□□□□ 0.17
SRGAP3-210ENST00000491467 INSRP06213 1382 aa16.12■□□□□ 0.17
SRGAP3-210ENST00000491467 KLHL34Q8N239 644 aa16.11■□□□□ 0.17
SRGAP3-210ENST00000491467 ROBO2Q9HCK4 1378 aa16.11■□□□□ 0.17
SRGAP3-210ENST00000491467 GOLGB1Q14789 3259 aaKnown RBP16.11■□□□□ 0.17
SRGAP3-210ENST00000491467 CFAP70Q5T0N1 1121 aa16.1■□□□□ 0.17
SRGAP3-210ENST00000491467 FAM9BQ8IZU0 186 aa16.1■□□□□ 0.17
SRGAP3-210ENST00000491467 MTFR1LQ9H019 292 aa16.1■□□□□ 0.17
SRGAP3-210ENST00000491467 NPC1L1Q9UHC9 1359 aa16.1■□□□□ 0.17
SRGAP3-210ENST00000491467 RGPD3A6NKT7 1758 aaPredicted RBP16.1■□□□□ 0.17
SRGAP3-210ENST00000491467 RGPD4Q7Z3J3 1758 aa16.1■□□□□ 0.17
SRGAP3-210ENST00000491467 NEFLP07196 543 aa16.09■□□□□ 0.17
SRGAP3-210ENST00000491467 NLRP13Q86W25 1043 aa16.09■□□□□ 0.17
SRGAP3-210ENST00000491467 PUS7Q96PZ0 661 aaKnown RBP16.09■□□□□ 0.17
SRGAP3-210ENST00000491467 TNS3Q68CZ2 1445 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms