RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 UPF1Q92900 1129 aaKnown RBP eCLIP20.09■□□□□ 0.818e-7■■■■■ 27.8
VTI1A-206ENST00000489142 NWD2Q9ULI1 1742 aa20.08■□□□□ 0.81
VTI1A-206ENST00000489142 NUTM2GQ5VZR2 741 aa20.08■□□□□ 0.81
VTI1A-206ENST00000489142 UNC5CLQ8IV45 518 aa20.08■□□□□ 0.81
VTI1A-206ENST00000489142 PPIP5K1Q6PFW1 1433 aa20.08■□□□□ 0.8
VTI1A-206ENST00000489142 GLI3P10071 1580 aa20.08■□□□□ 0.8
VTI1A-206ENST00000489142 TONSLQ96HA7 1378 aa20.08■□□□□ 0.8
VTI1A-206ENST00000489142 CCDC61Q9Y6R9 512 aa20.07■□□□□ 0.8
VTI1A-206ENST00000489142 POLR3AO14802 1390 aaPredicted RBP20.07■□□□□ 0.8
VTI1A-206ENST00000489142 PHRF1Q9P1Y6 1649 aaKnown RBP20.06■□□□□ 0.8
VTI1A-206ENST00000489142 NRAPQ86VF7 1730 aa20.06■□□□□ 0.8
VTI1A-206ENST00000489142 RALGAPBQ86X10 1494 aa20.05■□□□□ 0.8
VTI1A-206ENST00000489142 FAM83GA6ND36 823 aa20.05■□□□□ 0.8
VTI1A-206ENST00000489142 GJD4Q96KN9 370 aaPredicted RBP20.05■□□□□ 0.8
VTI1A-206ENST00000489142 PLEKHG3A1L390 1219 aa20.04■□□□□ 0.8
VTI1A-206ENST00000489142 COL14A1Q05707 1796 aaKnown RBP20.03■□□□□ 0.8
VTI1A-206ENST00000489142 BRWD3Q6RI45 1802 aa20.02■□□□□ 0.8
VTI1A-206ENST00000489142 CCDC9Q9Y3X0 531 aaKnown RBP20.02■□□□□ 0.8
VTI1A-206ENST00000489142 EVC2Q86UK5 1308 aa20.01■□□□□ 0.79
VTI1A-206ENST00000489142 BTG4Q9NY30 223 aa20■□□□□ 0.79
VTI1A-206ENST00000489142 CABP1Q9NZU7 370 aa20■□□□□ 0.79
VTI1A-206ENST00000489142 CARD11Q9BXL7 1154 aa19.99■□□□□ 0.79
VTI1A-206ENST00000489142 VPS72Q15906 364 aa19.98■□□□□ 0.79
VTI1A-206ENST00000489142 ABTB2Q8N961 1025 aa19.98■□□□□ 0.79
VTI1A-206ENST00000489142 NRKQ7Z2Y5 1582 aa19.98■□□□□ 0.79
VTI1A-206ENST00000489142 ATAD2Q6PL18 1390 aa19.97■□□□□ 0.79
VTI1A-206ENST00000489142 KIAA0232Q92628 1395 aa19.97■□□□□ 0.79
VTI1A-206ENST00000489142 CHRNA2Q15822 529 aa19.97■□□□□ 0.79
VTI1A-206ENST00000489142 PRDM11Q9NQV5 511 aa19.97■□□□□ 0.79
VTI1A-206ENST00000489142 EP400Q96L91 3159 aa19.96■□□□□ 0.79
VTI1A-206ENST00000489142 AKAP12Q02952 1782 aa19.96■□□□□ 0.79
VTI1A-206ENST00000489142 ZC3H6P61129 1189 aaKnown RBP19.96■□□□□ 0.79
VTI1A-206ENST00000489142 USP6P35125 1406 aa19.94■□□□□ 0.78
VTI1A-206ENST00000489142 PIK3C2AO00443 1686 aa19.94■□□□□ 0.78
VTI1A-206ENST00000489142 SEPT12Q8IYM1 358 aa19.93■□□□□ 0.78
VTI1A-206ENST00000489142 A0A0G2JS52 829 aa19.91■□□□□ 0.78
VTI1A-206ENST00000489142 MYT1Q01538 1121 aa19.91■□□□□ 0.78
VTI1A-206ENST00000489142 PCGF6Q9BYE7 350 aa19.91■□□□□ 0.78
VTI1A-206ENST00000489142 USP19O94966 1318 aa19.91■□□□□ 0.78
VTI1A-206ENST00000489142 FAM98CQ17RN3 349 aaKnown RBP19.9■□□□□ 0.78
VTI1A-206ENST00000489142 STRN4Q9NRL3 753 aa19.89■□□□□ 0.77
VTI1A-206ENST00000489142 LMO7Q8WWI1 1683 aa19.88■□□□□ 0.77
VTI1A-206ENST00000489142 SSH2Q76I76 1423 aa19.88■□□□□ 0.77
VTI1A-206ENST00000489142 SBNO2Q9Y2G9 1366 aa19.88■□□□□ 0.77
VTI1A-206ENST00000489142 ZBTB7CA1YPR0 619 aa19.88■□□□□ 0.77
VTI1A-206ENST00000489142 NLRP13Q86W25 1043 aa19.88■□□□□ 0.77
VTI1A-206ENST00000489142 MON2Q7Z3U7 1717 aa19.88■□□□□ 0.77
VTI1A-206ENST00000489142 SPATA31A5Q5VU36 1347 aa19.87■□□□□ 0.77
VTI1A-206ENST00000489142 SPATA31A7Q8IWB4 1347 aa19.87■□□□□ 0.77
VTI1A-206ENST00000489142 NLRP6P59044 892 aa19.87■□□□□ 0.77
VTI1A-206ENST00000489142 CAMTA1Q9Y6Y1 1673 aa19.87■□□□□ 0.77
VTI1A-206ENST00000489142 GCP02774 474 aa19.86■□□□□ 0.77
VTI1A-206ENST00000489142 SLIT3O75094 1523 aa19.86■□□□□ 0.77
VTI1A-206ENST00000489142 BRD4O60885 1362 aaPredicted RBP19.85■□□□□ 0.77
VTI1A-206ENST00000489142 THSD7AQ9UPZ6 1657 aa19.85■□□□□ 0.77
VTI1A-206ENST00000489142 ONECUT3O60422 494 aaPredicted RBP19.85■□□□□ 0.77
VTI1A-206ENST00000489142 CPSF1Q10570 1443 aaKnown RBP19.85■□□□□ 0.77
VTI1A-206ENST00000489142 KTN1Q86UP2 1357 aaKnown RBP19.84■□□□□ 0.77
VTI1A-206ENST00000489142 TTC21BQ7Z4L5 1316 aa19.84■□□□□ 0.77
VTI1A-206ENST00000489142 KRT27Q7Z3Y8 459 aa19.84■□□□□ 0.77
VTI1A-206ENST00000489142 USP35Q9P2H5 1018 aa19.84■□□□□ 0.77
VTI1A-206ENST00000489142 CPDO75976 1380 aa19.83■□□□□ 0.77
VTI1A-206ENST00000489142 SOX12O15370 315 aa19.83■□□□□ 0.77
VTI1A-206ENST00000489142 TMC1Q8TDI8 760 aa19.83■□□□□ 0.77
VTI1A-206ENST00000489142 SPATA31A1Q5TZJ5 1347 aa19.82■□□□□ 0.76
VTI1A-206ENST00000489142 CD163L1Q9NR16 1453 aa19.82■□□□□ 0.76
VTI1A-206ENST00000489142 ST20-MTHFSA0A0A6YYL1 179 aa19.82■□□□□ 0.76
VTI1A-206ENST00000489142 EVA1CP58658 441 aa19.82■□□□□ 0.76
VTI1A-206ENST00000489142 FAM182BQ5T319 152 aa19.82■□□□□ 0.76
VTI1A-206ENST00000489142 RGPD5Q99666 1765 aa19.81■□□□□ 0.76
VTI1A-206ENST00000489142 LARP1Q6PKG0 1096 aaKnown RBP19.81■□□□□ 0.76
VTI1A-206ENST00000489142 ZNF692Q9BU19 519 aaPredicted RBP19.81■□□□□ 0.76
VTI1A-206ENST00000489142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.8■□□□□ 0.76
VTI1A-206ENST00000489142 TESK2Q96S53 571 aa19.8■□□□□ 0.76
VTI1A-206ENST00000489142 SLC12A5Q9H2X9 1139 aa19.8■□□□□ 0.76
VTI1A-206ENST00000489142 COL5A2P05997 1499 aaPredicted RBP19.79■□□□□ 0.76
VTI1A-206ENST00000489142 ZRANB1Q9UGI0 708 aa19.79■□□□□ 0.76
VTI1A-206ENST00000489142 COL18A1P39060 1754 aa19.79■□□□□ 0.76
VTI1A-206ENST00000489142 BLMP54132 1417 aaPredicted RBP19.78■□□□□ 0.76
VTI1A-206ENST00000489142 TTC21AQ8NDW8 1320 aa19.77■□□□□ 0.76
VTI1A-206ENST00000489142 USP47Q96K76 1375 aa19.77■□□□□ 0.76
VTI1A-206ENST00000489142 A0A1W2PP64 1363 aa19.76■□□□□ 0.75
VTI1A-206ENST00000489142 NME9Q86XW9 330 aa19.76■□□□□ 0.75
VTI1A-206ENST00000489142 NFAT5O94916 1531 aa19.76■□□□□ 0.75
VTI1A-206ENST00000489142 HDGFL2Q7Z4V5 671 aaPredicted RBP19.75■□□□□ 0.75
VTI1A-206ENST00000489142 DEFB132Q7Z7B7 95 aa19.75■□□□□ 0.75
VTI1A-206ENST00000489142 CCDC125Q86Z20 511 aa19.75■□□□□ 0.75
VTI1A-206ENST00000489142 AATKQ6ZMQ8 1374 aa19.74■□□□□ 0.75
VTI1A-206ENST00000489142 USP54Q70EL1 1684 aa19.74■□□□□ 0.75
VTI1A-206ENST00000489142 LTN1O94822 1766 aa19.73■□□□□ 0.75
VTI1A-206ENST00000489142 AXIN2Q9Y2T1 843 aa19.73■□□□□ 0.75
VTI1A-206ENST00000489142 RGPD1P0DJD0 1748 aa19.72■□□□□ 0.75
VTI1A-206ENST00000489142 SF3B2Q13435 895 aaKnown RBP19.72■□□□□ 0.75
VTI1A-206ENST00000489142 TCP11L2Q8N4U5 519 aa19.72■□□□□ 0.75
VTI1A-206ENST00000489142 WNK3Q9BYP7 1800 aa19.72■□□□□ 0.75
VTI1A-206ENST00000489142 CRB1P82279 1406 aa19.71■□□□□ 0.75
VTI1A-206ENST00000489142 EDC4Q6P2E9 1401 aaKnown RBP19.71■□□□□ 0.75
VTI1A-206ENST00000489142 ARHGEF25Q86VW2 580 aa19.71■□□□□ 0.75
VTI1A-206ENST00000489142 CLSPNQ9HAW4 1339 aa19.71■□□□□ 0.75
VTI1A-206ENST00000489142 TNS1Q9HBL0 1735 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms