RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ACIN1Q9UKV3 1341 aaKnown RBP22.87■■□□□ 1.25
MCF2L-228ENST00000487354 SPATA31A5Q5VU36 1347 aa22.86■■□□□ 1.25
MCF2L-228ENST00000487354 SPATA31A7Q8IWB4 1347 aa22.86■■□□□ 1.25
MCF2L-228ENST00000487354 BAG6P46379 1132 aa22.86■■□□□ 1.25
MCF2L-228ENST00000487354 HIRIP3Q9BW71 556 aaPredicted RBP22.86■■□□□ 1.25
MCF2L-228ENST00000487354 FAM182BQ5T319 152 aa22.85■■□□□ 1.25
MCF2L-228ENST00000487354 TOPAZ1Q8N9V7 1692 aa22.84■■□□□ 1.25
MCF2L-228ENST00000487354 POGKQ9P215 609 aa22.84■■□□□ 1.25
MCF2L-228ENST00000487354 ATP7BP35670 1465 aa22.84■■□□□ 1.25
MCF2L-228ENST00000487354 RREB1Q92766 1687 aa22.84■■□□□ 1.25
MCF2L-228ENST00000487354 EN1Q05925 392 aaPredicted RBP22.83■■□□□ 1.25
MCF2L-228ENST00000487354 MINK1Q8N4C8 1332 aaPredicted RBP22.82■■□□□ 1.24
MCF2L-228ENST00000487354 GPRASP1Q5JY77 1395 aa22.82■■□□□ 1.24
MCF2L-228ENST00000487354 A0A0G2JS52 829 aa22.82■■□□□ 1.24
MCF2L-228ENST00000487354 MYT1Q01538 1121 aa22.82■■□□□ 1.24
MCF2L-228ENST00000487354 TRAK1Q9UPV9 953 aa22.82■■□□□ 1.24
MCF2L-228ENST00000487354 EIF3AQ14152 1382 aaKnown RBP22.81■■□□□ 1.24
MCF2L-228ENST00000487354 NUP188Q5SRE5 1749 aa22.79■■□□□ 1.24
MCF2L-228ENST00000487354 WASLO00401 505 aaPredicted RBP22.79■■□□□ 1.24
MCF2L-228ENST00000487354 NRKQ7Z2Y5 1582 aa22.78■■□□□ 1.24
MCF2L-228ENST00000487354 LMO7Q8WWI1 1683 aa22.77■■□□□ 1.24
MCF2L-228ENST00000487354 SPATA31A1Q5TZJ5 1347 aa22.77■■□□□ 1.24
MCF2L-228ENST00000487354 KIAA0232Q92628 1395 aa22.76■■□□□ 1.23
MCF2L-228ENST00000487354 RAB3GAP2Q9H2M9 1393 aa22.76■■□□□ 1.23
MCF2L-228ENST00000487354 R3HDM1Q15032 1099 aaKnown RBP22.75■■□□□ 1.23
MCF2L-228ENST00000487354 EZH2Q15910 746 aaKnown RBP22.74■■□□□ 1.23
MCF2L-228ENST00000487354 PRDM11Q9NQV5 511 aa22.74■■□□□ 1.23
MCF2L-228ENST00000487354 CAMKK2Q96RR4 588 aa22.73■■□□□ 1.23
MCF2L-228ENST00000487354 NGDNQ8NEJ9 315 aaKnown RBP22.72■■□□□ 1.23
MCF2L-228ENST00000487354 CHRNA2Q15822 529 aa22.71■■□□□ 1.23
MCF2L-228ENST00000487354 CAMTA1Q9Y6Y1 1673 aa22.71■■□□□ 1.23
MCF2L-228ENST00000487354 PAK3O75914 559 aaPredicted RBP22.7■■□□□ 1.22
MCF2L-228ENST00000487354 POLR3AO14802 1390 aaPredicted RBP22.7■■□□□ 1.22
MCF2L-228ENST00000487354 SSH2Q76I76 1423 aa22.7■■□□□ 1.22
MCF2L-228ENST00000487354 PARP4Q9UKK3 1724 aaKnown RBP22.68■■□□□ 1.22
MCF2L-228ENST00000487354 TRIM37O94972 964 aa22.68■■□□□ 1.22
MCF2L-228ENST00000487354 DCAF11Q8TEB1 546 aa22.68■■□□□ 1.22
MCF2L-228ENST00000487354 NUDT16Q96DE0 195 aaKnown RBP22.68■■□□□ 1.22
MCF2L-228ENST00000487354 KDM2AQ9Y2K7 1162 aa22.68■■□□□ 1.22
MCF2L-228ENST00000487354 KIAA1210Q9ULL0 1709 aa22.67■■□□□ 1.22
MCF2L-228ENST00000487354 PARD3Q8TEW0 1356 aa22.66■■□□□ 1.22
MCF2L-228ENST00000487354 PEAK1Q9H792 1746 aa22.66■■□□□ 1.22
MCF2L-228ENST00000487354 FAM196AQ6ZSG2 479 aa22.65■■□□□ 1.22
MCF2L-228ENST00000487354 STRN4Q9NRL3 753 aa22.65■■□□□ 1.22
MCF2L-228ENST00000487354 ZC3H6P61129 1189 aaKnown RBP22.64■■□□□ 1.21
MCF2L-228ENST00000487354 NUTM2GQ5VZR2 741 aa22.64■■□□□ 1.21
MCF2L-228ENST00000487354 SBF2Q86WG5 1849 aa22.64■■□□□ 1.21
MCF2L-228ENST00000487354 BARGINQ6ZT62 677 aa22.63■■□□□ 1.21
MCF2L-228ENST00000487354 USP19O94966 1318 aa22.62■■□□□ 1.21
MCF2L-228ENST00000487354 RGPD3A6NKT7 1758 aaPredicted RBP22.62■■□□□ 1.21
MCF2L-228ENST00000487354 RGPD4Q7Z3J3 1758 aa22.62■■□□□ 1.21
MCF2L-228ENST00000487354 CPDO75976 1380 aa22.62■■□□□ 1.21
MCF2L-228ENST00000487354 WNK3Q9BYP7 1800 aa22.61■■□□□ 1.21
MCF2L-228ENST00000487354 ACEP12821 1306 aa22.61■■□□□ 1.21
MCF2L-228ENST00000487354 LRRC37A3O60309 1634 aa22.6■■□□□ 1.21
MCF2L-228ENST00000487354 APBA3O96018 575 aa22.6■■□□□ 1.21
MCF2L-228ENST00000487354 LARP1Q6PKG0 1096 aaKnown RBP22.6■■□□□ 1.21
MCF2L-228ENST00000487354 CDK19Q9BWU1 502 aa22.6■■□□□ 1.21
MCF2L-228ENST00000487354 STAC3Q96MF2 364 aa22.59■■□□□ 1.21
MCF2L-228ENST00000487354 USP35Q9P2H5 1018 aa22.59■■□□□ 1.21
MCF2L-228ENST00000487354 COL5A2P05997 1499 aaPredicted RBP22.59■■□□□ 1.21
MCF2L-228ENST00000487354 PLEKHG3A1L390 1219 aa22.58■■□□□ 1.21
MCF2L-228ENST00000487354 NBPF8Q3BBV2 869 aa22.58■■□□□ 1.21
MCF2L-228ENST00000487354 COL18A1P39060 1754 aa22.57■■□□□ 1.2
MCF2L-228ENST00000487354 CASZ1Q86V15 1759 aa22.56■■□□□ 1.2
MCF2L-228ENST00000487354 CCDC61Q9Y6R9 512 aa22.55■■□□□ 1.2
MCF2L-228ENST00000487354 SLIT3O75094 1523 aa22.54■■□□□ 1.2
MCF2L-228ENST00000487354 TCP11L2Q8N4U5 519 aa22.54■■□□□ 1.2
MCF2L-228ENST00000487354 QRICH2Q9H0J4 1663 aa22.54■■□□□ 1.2
MCF2L-228ENST00000487354 PIK3C2AO00443 1686 aa22.53■■□□□ 1.2
MCF2L-228ENST00000487354 PDE3BQ13370 1112 aa22.52■■□□□ 1.2
MCF2L-228ENST00000487354 PPIP5K1Q6PFW1 1433 aa22.51■■□□□ 1.19
MCF2L-228ENST00000487354 EVA1CP58658 441 aa22.51■■□□□ 1.19
MCF2L-228ENST00000487354 ABTB2Q8N961 1025 aa22.51■■□□□ 1.19
MCF2L-228ENST00000487354 CRB1P82279 1406 aa22.49■■□□□ 1.19
MCF2L-228ENST00000487354 AKAP12Q02952 1782 aa22.49■■□□□ 1.19
MCF2L-228ENST00000487354 THRAP3Q9Y2W1 955 aaKnown RBP22.49■■□□□ 1.19
MCF2L-228ENST00000487354 RGPD5Q99666 1765 aa22.48■■□□□ 1.19
MCF2L-228ENST00000487354 GCP02774 474 aa22.48■■□□□ 1.19
MCF2L-228ENST00000487354 NBPF1Q3BBV0 1214 aa22.48■■□□□ 1.19
MCF2L-228ENST00000487354 OVOS2A0A0G2JMS6 1433 aa22.48■■□□□ 1.19
MCF2L-228ENST00000487354 OVOS2A0A0J9YW53 1432 aa22.48■■□□□ 1.19
MCF2L-228ENST00000487354 OVOS2Q6IE36 1432 aa22.48■■□□□ 1.19
MCF2L-228ENST00000487354 USP6P35125 1406 aa22.46■■□□□ 1.19
MCF2L-228ENST00000487354 NBPF14Q5TI25 921 aa22.44■■□□□ 1.18
MCF2L-228ENST00000487354 AATKQ6ZMQ8 1374 aa22.44■■□□□ 1.18
MCF2L-228ENST00000487354 MYOM1P52179 1685 aa22.43■■□□□ 1.18
MCF2L-228ENST00000487354 BRD4O60885 1362 aaPredicted RBP22.43■■□□□ 1.18
MCF2L-228ENST00000487354 NINLQ9Y2I6 1382 aa22.43■■□□□ 1.18
MCF2L-228ENST00000487354 PTF1AQ7RTS3 328 aa22.43■■□□□ 1.18
MCF2L-228ENST00000487354 NLRP13Q86W25 1043 aa22.43■■□□□ 1.18
MCF2L-228ENST00000487354 ANO8Q9HCE9 1232 aaPredicted RBP22.43■■□□□ 1.18
MCF2L-228ENST00000487354 CABP2Q9NPB3 220 aa22.42■■□□□ 1.18
MCF2L-228ENST00000487354 KCNQ2O43526 872 aa22.41■■□□□ 1.18
MCF2L-228ENST00000487354 YY1P25490 414 aa22.41■■□□□ 1.18
MCF2L-228ENST00000487354 SPON1Q9HCB6 807 aa22.41■■□□□ 1.18
MCF2L-228ENST00000487354 CENPJQ9HC77 1338 aaPredicted RBP22.4■■□□□ 1.18
MCF2L-228ENST00000487354 BCL9O00512 1426 aa22.4■■□□□ 1.18
MCF2L-228ENST00000487354 SRPK2P78362 688 aaKnown RBP22.39■■□□□ 1.17
MCF2L-228ENST00000487354 PLSCR1O15162 318 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms