RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 KDM2AQ9Y2K7 1162 aa28.64■■■□□ 2.18
SMPDL3A-202ENST00000487215 DCAF11Q8TEB1 546 aa28.62■■■□□ 2.17
SMPDL3A-202ENST00000487215 CRYBG1Q9Y4K1 1723 aa28.62■■■□□ 2.17
SMPDL3A-202ENST00000487215 BAG6P46379 1132 aa28.6■■■□□ 2.17
SMPDL3A-202ENST00000487215 NGDNQ8NEJ9 315 aaKnown RBP28.6■■■□□ 2.17
SMPDL3A-202ENST00000487215 LRP5O75197 1615 aa28.59■■■□□ 2.17
SMPDL3A-202ENST00000487215 SPATA31A5Q5VU36 1347 aa28.58■■■□□ 2.17
SMPDL3A-202ENST00000487215 SPATA31A7Q8IWB4 1347 aa28.58■■■□□ 2.17
SMPDL3A-202ENST00000487215 PAK3O75914 559 aaPredicted RBP28.57■■■□□ 2.16
SMPDL3A-202ENST00000487215 ATP7BP35670 1465 aa28.56■■■□□ 2.16
SMPDL3A-202ENST00000487215 THSD7AQ9UPZ6 1657 aa28.55■■■□□ 2.16
SMPDL3A-202ENST00000487215 STAC3Q96MF2 364 aa28.55■■■□□ 2.16
SMPDL3A-202ENST00000487215 PRDM11Q9NQV5 511 aa28.55■■■□□ 2.16
SMPDL3A-202ENST00000487215 ARHGEF28Q8N1W1 1705 aaKnown RBP28.55■■■□□ 2.16
SMPDL3A-202ENST00000487215 PSDA5PKW4 1024 aaPredicted RBP28.54■■■□□ 2.16
SMPDL3A-202ENST00000487215 FAM182BQ5T319 152 aa28.54■■■□□ 2.16
SMPDL3A-202ENST00000487215 RGPD1P0DJD0 1748 aa28.53■■■□□ 2.16
SMPDL3A-202ENST00000487215 ITSN1Q15811 1721 aa28.52■■■□□ 2.16
SMPDL3A-202ENST00000487215 EN1Q05925 392 aaPredicted RBP28.51■■■□□ 2.15
SMPDL3A-202ENST00000487215 NUDT16Q96DE0 195 aaKnown RBP28.51■■■□□ 2.15
SMPDL3A-202ENST00000487215 KIAA0232Q92628 1395 aa28.5■■■□□ 2.15
SMPDL3A-202ENST00000487215 HRCP23327 699 aa28.49■■■□□ 2.15
SMPDL3A-202ENST00000487215 PHRF1Q9P1Y6 1649 aaKnown RBP28.49■■■□□ 2.15
SMPDL3A-202ENST00000487215 SPATA31A1Q5TZJ5 1347 aa28.47■■■□□ 2.15
SMPDL3A-202ENST00000487215 DISP2A7MBM2 1401 aa28.47■■■□□ 2.15
SMPDL3A-202ENST00000487215 CHRNA2Q15822 529 aa28.47■■■□□ 2.15
SMPDL3A-202ENST00000487215 TNS1Q9HBL0 1735 aaKnown RBP28.46■■■□□ 2.15
SMPDL3A-202ENST00000487215 CDK19Q9BWU1 502 aa28.44■■■□□ 2.14
SMPDL3A-202ENST00000487215 TOPAZ1Q8N9V7 1692 aa28.43■■■□□ 2.14
SMPDL3A-202ENST00000487215 POLR3AO14802 1390 aaPredicted RBP28.43■■■□□ 2.14
SMPDL3A-202ENST00000487215 ZC3H6P61129 1189 aaKnown RBP28.43■■■□□ 2.14
SMPDL3A-202ENST00000487215 NUTM2GQ5VZR2 741 aa28.43■■■□□ 2.14
SMPDL3A-202ENST00000487215 STRN4Q9NRL3 753 aa28.43■■■□□ 2.14
SMPDL3A-202ENST00000487215 R3HDM1Q15032 1099 aaKnown RBP28.4■■■□□ 2.14
SMPDL3A-202ENST00000487215 ACEP12821 1306 aa28.4■■■□□ 2.14
SMPDL3A-202ENST00000487215 EZH2Q15910 746 aaKnown RBP28.39■■■□□ 2.14
SMPDL3A-202ENST00000487215 NRKQ7Z2Y5 1582 aa28.38■■■□□ 2.13
SMPDL3A-202ENST00000487215 NBPF8Q3BBV2 869 aa28.38■■■□□ 2.13
SMPDL3A-202ENST00000487215 CCDC61Q9Y6R9 512 aa28.38■■■□□ 2.13
SMPDL3A-202ENST00000487215 SSH2Q76I76 1423 aa28.37■■■□□ 2.13
SMPDL3A-202ENST00000487215 TRIM37O94972 964 aa28.37■■■□□ 2.13
SMPDL3A-202ENST00000487215 FAM196AQ6ZSG2 479 aa28.37■■■□□ 2.13
SMPDL3A-202ENST00000487215 PLEKHG3A1L390 1219 aa28.36■■■□□ 2.13
SMPDL3A-202ENST00000487215 USP35Q9P2H5 1018 aa28.36■■■□□ 2.13
SMPDL3A-202ENST00000487215 CAMKK2Q96RR4 588 aa28.35■■■□□ 2.13
SMPDL3A-202ENST00000487215 KIAA1210Q9ULL0 1709 aa28.34■■■□□ 2.13
SMPDL3A-202ENST00000487215 CAMTA1Q9Y6Y1 1673 aa28.33■■■□□ 2.13
SMPDL3A-202ENST00000487215 EVA1CP58658 441 aa28.33■■■□□ 2.13
SMPDL3A-202ENST00000487215 BARGINQ6ZT62 677 aa28.33■■■□□ 2.13
SMPDL3A-202ENST00000487215 ABTB2Q8N961 1025 aa28.32■■■□□ 2.12
SMPDL3A-202ENST00000487215 CPDO75976 1380 aa28.32■■■□□ 2.12
SMPDL3A-202ENST00000487215 LMO7Q8WWI1 1683 aa28.32■■■□□ 2.12
SMPDL3A-202ENST00000487215 LARP1Q6PKG0 1096 aaKnown RBP28.31■■■□□ 2.12
SMPDL3A-202ENST00000487215 USP19O94966 1318 aa28.31■■■□□ 2.12
SMPDL3A-202ENST00000487215 PARD3Q8TEW0 1356 aa28.3■■■□□ 2.12
SMPDL3A-202ENST00000487215 APBA3O96018 575 aa28.3■■■□□ 2.12
SMPDL3A-202ENST00000487215 PDE3BQ13370 1112 aa28.29■■■□□ 2.12
SMPDL3A-202ENST00000487215 NBPF1Q3BBV0 1214 aa28.29■■■□□ 2.12
SMPDL3A-202ENST00000487215 TCP11L2Q8N4U5 519 aa28.27■■■□□ 2.12
SMPDL3A-202ENST00000487215 PPIP5K1Q6PFW1 1433 aa28.26■■■□□ 2.12
SMPDL3A-202ENST00000487215 RREB1Q92766 1687 aa28.25■■■□□ 2.11
SMPDL3A-202ENST00000487215 SRPK2P78362 688 aaKnown RBP28.24■■■□□ 2.11
SMPDL3A-202ENST00000487215 NLRP13Q86W25 1043 aa28.24■■■□□ 2.11
SMPDL3A-202ENST00000487215 GCP02774 474 aa28.23■■■□□ 2.11
SMPDL3A-202ENST00000487215 CENPJQ9HC77 1338 aaPredicted RBP28.22■■■□□ 2.11
SMPDL3A-202ENST00000487215 COL5A2P05997 1499 aaPredicted RBP28.22■■■□□ 2.11
SMPDL3A-202ENST00000487215 CABP2Q9NPB3 220 aa28.22■■■□□ 2.11
SMPDL3A-202ENST00000487215 THRAP3Q9Y2W1 955 aaKnown RBP28.22■■■□□ 2.11
SMPDL3A-202ENST00000487215 NUP188Q5SRE5 1749 aa28.21■■■□□ 2.11
SMPDL3A-202ENST00000487215 BRD4O60885 1362 aaPredicted RBP28.19■■■□□ 2.1
SMPDL3A-202ENST00000487215 PARP4Q9UKK3 1724 aaKnown RBP28.18■■■□□ 2.1
SMPDL3A-202ENST00000487215 CRB1P82279 1406 aa28.17■■■□□ 2.1
SMPDL3A-202ENST00000487215 QRICH2Q9H0J4 1663 aa28.16■■■□□ 2.1
SMPDL3A-202ENST00000487215 USP6P35125 1406 aa28.16■■■□□ 2.1
SMPDL3A-202ENST00000487215 SLIT3O75094 1523 aa28.14■■■□□ 2.1
SMPDL3A-202ENST00000487215 NBPF14Q5TI25 921 aa28.14■■■□□ 2.1
SMPDL3A-202ENST00000487215 CABP1Q9NZU7 370 aa28.14■■■□□ 2.1
SMPDL3A-202ENST00000487215 ZBTB7CA1YPR0 619 aa28.13■■■□□ 2.09
SMPDL3A-202ENST00000487215 AATKQ6ZMQ8 1374 aa28.12■■■□□ 2.09
SMPDL3A-202ENST00000487215 NLRP6P59044 892 aa28.12■■■□□ 2.09
SMPDL3A-202ENST00000487215 PEAK1Q9H792 1746 aa28.11■■■□□ 2.09
SMPDL3A-202ENST00000487215 OVOS2A0A0G2JMS6 1433 aa28.1■■■□□ 2.09
SMPDL3A-202ENST00000487215 OVOS2A0A0J9YW53 1432 aa28.1■■■□□ 2.09
SMPDL3A-202ENST00000487215 OVOS2Q6IE36 1432 aa28.1■■■□□ 2.09
SMPDL3A-202ENST00000487215 LRRC37A3O60309 1634 aa28.1■■■□□ 2.09
SMPDL3A-202ENST00000487215 C11orf95C9JLR9 678 aaPredicted RBP28.09■■■□□ 2.09
SMPDL3A-202ENST00000487215 PIK3C2AO00443 1686 aa28.08■■■□□ 2.09
SMPDL3A-202ENST00000487215 COL18A1P39060 1754 aa28.05■■■□□ 2.08
SMPDL3A-202ENST00000487215 TOM1L2Q6ZVM7 507 aa28.05■■■□□ 2.08
SMPDL3A-202ENST00000487215 DDB1Q16531 1140 aa28.04■■■□□ 2.08
SMPDL3A-202ENST00000487215 RGPD3A6NKT7 1758 aaPredicted RBP28.03■■■□□ 2.08
SMPDL3A-202ENST00000487215 RGPD4Q7Z3J3 1758 aa28.03■■■□□ 2.08
SMPDL3A-202ENST00000487215 EVC2Q86UK5 1308 aa28.02■■■□□ 2.08
SMPDL3A-202ENST00000487215 L3MBTL2Q969R5 705 aa28.02■■■□□ 2.08
SMPDL3A-202ENST00000487215 SPON1Q9HCB6 807 aa28.02■■■□□ 2.08
SMPDL3A-202ENST00000487215 AXIN2Q9Y2T1 843 aa28.02■■■□□ 2.08
SMPDL3A-202ENST00000487215 CPSF1Q10570 1443 aaKnown RBP28.01■■■□□ 2.08
SMPDL3A-202ENST00000487215 WDR17Q8IZU2 1322 aa28.01■■■□□ 2.07
SMPDL3A-202ENST00000487215 TRPM1Q7Z4N2 1603 aa28■■■□□ 2.07
SMPDL3A-202ENST00000487215 SBF2Q86WG5 1849 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 147.3 ms