RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 FAM184AQ8NB25 1140 aa13.96□□□□□ -0.18
U2AF1-209ENST00000475639 CCDC47Q96A33 483 aaKnown RBP13.95□□□□□ -0.18
U2AF1-209ENST00000475639 ACBD3Q9H3P7 528 aa13.95□□□□□ -0.18
U2AF1-209ENST00000475639 JARID2Q92833 1246 aaPredicted RBP13.95□□□□□ -0.18
U2AF1-209ENST00000475639 GTPBP4Q9BZE4 634 aaKnown RBP13.95□□□□□ -0.18
U2AF1-209ENST00000475639 CSB-PGBD3P0DP91 1061 aa13.95□□□□□ -0.18
U2AF1-209ENST00000475639 HDGFL2Q7Z4V5 671 aaPredicted RBP13.95□□□□□ -0.18
U2AF1-209ENST00000475639 SPAG9O60271 1321 aaKnown RBP13.94□□□□□ -0.18
U2AF1-209ENST00000475639 KDM5DQ9BY66 1539 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 PLXNC1O60486 1568 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 ZNF445P59923 1031 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 HSP90B2PQ58FF3 399 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 RUFY1Q96T51 708 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 CBX1P83916 185 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 HOMER1Q86YM7 354 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 ZNF592Q92610 1267 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 RBSNQ9H1K0 784 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 PRAG1Q86YV5 1406 aa13.94□□□□□ -0.18
U2AF1-209ENST00000475639 ADGBQ8N7X0 1667 aa13.93□□□□□ -0.18
U2AF1-209ENST00000475639 FOXD4L1Q9NU39 408 aa13.93□□□□□ -0.18
U2AF1-209ENST00000475639 SSFA2P28290 1259 aa13.93□□□□□ -0.18
U2AF1-209ENST00000475639 POLA1P09884 1462 aaPredicted RBP13.93□□□□□ -0.18
U2AF1-209ENST00000475639 ZNF710Q8N1W2 664 aa13.93□□□□□ -0.18
U2AF1-209ENST00000475639 FAM135AQ9P2D6 1515 aa13.93□□□□□ -0.18
U2AF1-209ENST00000475639 RBM25P49756 843 aaKnown RBP13.93□□□□□ -0.18
U2AF1-209ENST00000475639 ERBINQ96RT1 1412 aa13.92□□□□□ -0.18
U2AF1-209ENST00000475639 MAGI2Q86UL8 1455 aa13.92□□□□□ -0.18
U2AF1-209ENST00000475639 CADPSQ9ULU8 1353 aa13.92□□□□□ -0.18
U2AF1-209ENST00000475639 DCTN1Q14203 1278 aa13.92□□□□□ -0.18
U2AF1-209ENST00000475639 LETM1O95202 739 aaPredicted RBP13.92□□□□□ -0.18
U2AF1-209ENST00000475639 PCMTD1Q96MG8 357 aaPredicted RBP13.92□□□□□ -0.18
U2AF1-209ENST00000475639 ARGLU1Q9NWB6 273 aaPredicted RBP13.92□□□□□ -0.18
U2AF1-209ENST00000475639 CD2BP2O95400 341 aaKnown RBP13.91□□□□□ -0.18
U2AF1-209ENST00000475639 TSC1Q92574 1164 aa13.91□□□□□ -0.18
U2AF1-209ENST00000475639 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.91□□□□□ -0.18
U2AF1-209ENST00000475639 CNKSR2Q8WXI2 1034 aa13.91□□□□□ -0.18
U2AF1-209ENST00000475639 AK7Q96M32 723 aa13.91□□□□□ -0.18
U2AF1-209ENST00000475639 SMC4Q9NTJ3 1288 aa13.91□□□□□ -0.18
U2AF1-209ENST00000475639 ABCC2Q92887 1545 aa13.91□□□□□ -0.18
U2AF1-209ENST00000475639 MCM5P33992 734 aa13.91□□□□□ -0.18
U2AF1-209ENST00000475639 NUP155O75694 1391 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 GPRASP1Q5JY77 1395 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 ATP2B3Q16720 1220 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 ZSCAN23Q3MJ62 389 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 SYNE3Q6ZMZ3 975 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 CLEC17AQ6ZS10 378 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 MYRIPQ8NFW9 859 aa13.9□□□□□ -0.18
U2AF1-209ENST00000475639 H0YHG0 523 aa13.9□□□□□ -0.19
U2AF1-209ENST00000475639 BAG4O95429 457 aaKnown RBP13.9□□□□□ -0.19
U2AF1-209ENST00000475639 PRDM15P57071 1507 aaPredicted RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 IPO4Q8TEX9 1081 aaKnown RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 ADGRL2O95490 1459 aa13.89□□□□□ -0.19
U2AF1-209ENST00000475639 FOXD4L5Q5VV16 416 aaPredicted RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 CAVIN1Q6NZI2 390 aaKnown RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 FOXD4L4Q8WXT5 416 aaPredicted RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 ANKRD50Q9ULJ7 1429 aa13.89□□□□□ -0.19
U2AF1-209ENST00000475639 WDR62O43379 1518 aa13.89□□□□□ -0.19
U2AF1-209ENST00000475639 PRIM1P49642 420 aaKnown RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 RARSP54136 660 aaKnown RBP13.89□□□□□ -0.19
U2AF1-209ENST00000475639 TCEAL9Q9UHQ7 104 aa13.89□□□□□ -0.19
U2AF1-209ENST00000475639 SLC4A10Q6U841 1118 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 KIF2CQ99661 725 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 PIK3C2GO75747 1445 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 APPP05067 770 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 WDR7Q9Y4E6 1490 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 AK9Q5TCS8 1911 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 ARHGAP31Q2M1Z3 1444 aa13.88□□□□□ -0.19
U2AF1-209ENST00000475639 EIF4G3O43432 1585 aaKnown RBP13.87□□□□□ -0.19
U2AF1-209ENST00000475639 SHROOM2Q13796 1616 aa13.87□□□□□ -0.19
U2AF1-209ENST00000475639 VGLL3A8MV65 326 aa13.87□□□□□ -0.19
U2AF1-209ENST00000475639 SAFB2Q14151 953 aaKnown RBP eCLIP13.87□□□□□ -0.19
U2AF1-209ENST00000475639 CT47A1Q5JQC4 288 aaPredicted RBP13.87□□□□□ -0.19
U2AF1-209ENST00000475639 MNS1Q8NEH6 495 aa13.87□□□□□ -0.19
U2AF1-209ENST00000475639 LRRFIP1Q32MZ4 808 aaKnown RBP13.87□□□□□ -0.19
U2AF1-209ENST00000475639 BCL2L13Q9BXK5 485 aa13.87□□□□□ -0.19
U2AF1-209ENST00000475639 DNMBPQ6XZF7 1577 aa13.86□□□□□ -0.19
U2AF1-209ENST00000475639 ODF2Q5BJF6 829 aa13.86□□□□□ -0.19
U2AF1-209ENST00000475639 HOOK1Q9UJC3 728 aaKnown RBP13.86□□□□□ -0.19
U2AF1-209ENST00000475639 GAS2L2Q8NHY3 880 aa13.85□□□□□ -0.19
U2AF1-209ENST00000475639 CCDC39Q9UFE4 941 aa13.85□□□□□ -0.19
U2AF1-209ENST00000475639 RDXP35241 583 aaKnown RBP13.85□□□□□ -0.19
U2AF1-209ENST00000475639 MCTP1Q6DN14 999 aa13.85□□□□□ -0.19
U2AF1-209ENST00000475639 ZNF830Q96NB3 372 aaPredicted RBP13.85□□□□□ -0.19
U2AF1-209ENST00000475639 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.85□□□□□ -0.19
U2AF1-209ENST00000475639 LAMC1P11047 1609 aa13.85□□□□□ -0.19
U2AF1-209ENST00000475639 CROCC2H7BZ55 1655 aa13.85□□□□□ -0.19
U2AF1-209ENST00000475639 TRIM29Q14134 588 aa13.85□□□□□ -0.19
U2AF1-209ENST00000475639 K7ELQ4 463 aaPredicted RBP13.85□□□□□ -0.19
U2AF1-209ENST00000475639 ABCC10Q5T3U5 1492 aa13.84□□□□□ -0.19
U2AF1-209ENST00000475639 ZBTB22O15209 634 aa13.84□□□□□ -0.19
U2AF1-209ENST00000475639 LMOD3Q0VAK6 560 aa13.84□□□□□ -0.19
U2AF1-209ENST00000475639 LMBRD1Q9NUN5 540 aa13.84□□□□□ -0.19
U2AF1-209ENST00000475639 GTF2F1P35269 517 aaKnown RBP eCLIP13.84□□□□□ -0.19
U2AF1-209ENST00000475639 ITSN2Q9NZM3 1697 aa13.83□□□□□ -0.19
U2AF1-209ENST00000475639 TOPBP1Q92547 1522 aa13.83□□□□□ -0.19
U2AF1-209ENST00000475639 FAM177BA6PVY3 158 aa13.83□□□□□ -0.2
U2AF1-209ENST00000475639 CWC15Q9P013 229 aaKnown RBP13.83□□□□□ -0.2
U2AF1-209ENST00000475639 RBM42Q9BTD8 480 aaKnown RBP13.83□□□□□ -0.2
U2AF1-209ENST00000475639 LAMC3Q9Y6N6 1575 aa13.83□□□□□ -0.2
U2AF1-209ENST00000475639 IGSF3O75054 1194 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms