RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 TULP4Q9NRJ4 1543 aa18.59■□□□□ 0.57
SKA3-206ENST00000475251 PPP4R3CPQ6ZMV5 832 aa18.58■□□□□ 0.56
SKA3-206ENST00000475251 ADGRB1O14514 1584 aa18.58■□□□□ 0.56
SKA3-206ENST00000475251 SPATA31A5Q5VU36 1347 aa18.57■□□□□ 0.56
SKA3-206ENST00000475251 SPATA31A7Q8IWB4 1347 aa18.57■□□□□ 0.56
SKA3-206ENST00000475251 PSDA5PKW4 1024 aaPredicted RBP18.57■□□□□ 0.56
SKA3-206ENST00000475251 HRCP23327 699 aa18.57■□□□□ 0.56
SKA3-206ENST00000475251 TRAK1Q9UPV9 953 aa18.57■□□□□ 0.56
SKA3-206ENST00000475251 NGDNQ8NEJ9 315 aaKnown RBP18.56■□□□□ 0.56
SKA3-206ENST00000475251 HIRIP3Q9BW71 556 aaPredicted RBP18.56■□□□□ 0.56
SKA3-206ENST00000475251 DISP2A7MBM2 1401 aa18.56■□□□□ 0.56
SKA3-206ENST00000475251 MINK1Q8N4C8 1332 aaPredicted RBP18.55■□□□□ 0.56
SKA3-206ENST00000475251 WASLO00401 505 aaPredicted RBP18.55■□□□□ 0.56
SKA3-206ENST00000475251 STAC3Q96MF2 364 aa18.55■□□□□ 0.56
SKA3-206ENST00000475251 PRDM11Q9NQV5 511 aa18.55■□□□□ 0.56
SKA3-206ENST00000475251 PAK3O75914 559 aaPredicted RBP18.54■□□□□ 0.56
SKA3-206ENST00000475251 EN1Q05925 392 aaPredicted RBP18.54■□□□□ 0.56
SKA3-206ENST00000475251 THSD7AQ9UPZ6 1657 aa18.54■□□□□ 0.56
SKA3-206ENST00000475251 PRR36Q9H6K5 1346 aa18.53■□□□□ 0.56
SKA3-206ENST00000475251 ITSN1Q15811 1721 aa18.53■□□□□ 0.56
SKA3-206ENST00000475251 CRYBG1Q9Y4K1 1723 aa18.52■□□□□ 0.56
SKA3-206ENST00000475251 TNS1Q9HBL0 1735 aaKnown RBP18.5■□□□□ 0.55
SKA3-206ENST00000475251 FAM196AQ6ZSG2 479 aa18.5■□□□□ 0.55
SKA3-206ENST00000475251 PARD3Q8TEW0 1356 aa18.5■□□□□ 0.55
SKA3-206ENST00000475251 ATP7BP35670 1465 aa18.5■□□□□ 0.55
SKA3-206ENST00000475251 SPATA31A1Q5TZJ5 1347 aa18.49■□□□□ 0.55
SKA3-206ENST00000475251 R3HDM1Q15032 1099 aaKnown RBP18.49■□□□□ 0.55
SKA3-206ENST00000475251 FAM182BQ5T319 152 aa18.49■□□□□ 0.55
SKA3-206ENST00000475251 DCAF11Q8TEB1 546 aa18.49■□□□□ 0.55
SKA3-206ENST00000475251 KIAA0232Q92628 1395 aa18.48■□□□□ 0.55
SKA3-206ENST00000475251 KDM2AQ9Y2K7 1162 aa18.48■□□□□ 0.55
SKA3-206ENST00000475251 RAB3GAP2Q9H2M9 1393 aa18.47■□□□□ 0.55
SKA3-206ENST00000475251 PHRF1Q9P1Y6 1649 aaKnown RBP18.46■□□□□ 0.55
SKA3-206ENST00000475251 EZH2Q15910 746 aaKnown RBP18.46■□□□□ 0.55
SKA3-206ENST00000475251 STRN4Q9NRL3 753 aa18.46■□□□□ 0.55
SKA3-206ENST00000475251 NUDT16Q96DE0 195 aaKnown RBP18.45■□□□□ 0.54
SKA3-206ENST00000475251 ARHGEF28Q8N1W1 1705 aaKnown RBP18.45■□□□□ 0.54
SKA3-206ENST00000475251 TRIM37O94972 964 aa18.44■□□□□ 0.54
SKA3-206ENST00000475251 EVA1CP58658 441 aa18.44■□□□□ 0.54
SKA3-206ENST00000475251 CAMKK2Q96RR4 588 aa18.44■□□□□ 0.54
SKA3-206ENST00000475251 APBA3O96018 575 aa18.43■□□□□ 0.54
SKA3-206ENST00000475251 PDE3BQ13370 1112 aa18.43■□□□□ 0.54
SKA3-206ENST00000475251 CHRNA2Q15822 529 aa18.43■□□□□ 0.54
SKA3-206ENST00000475251 BARGINQ6ZT62 677 aa18.43■□□□□ 0.54
SKA3-206ENST00000475251 ZC3H6P61129 1189 aaKnown RBP18.42■□□□□ 0.54
SKA3-206ENST00000475251 POLR3AO14802 1390 aaPredicted RBP18.42■□□□□ 0.54
SKA3-206ENST00000475251 USP35Q9P2H5 1018 aa18.41■□□□□ 0.54
SKA3-206ENST00000475251 SSH2Q76I76 1423 aa18.4■□□□□ 0.54
SKA3-206ENST00000475251 C11orf95C9JLR9 678 aaPredicted RBP18.4■□□□□ 0.54
SKA3-206ENST00000475251 NBPF8Q3BBV2 869 aa18.4■□□□□ 0.54
SKA3-206ENST00000475251 NBPF14Q5TI25 921 aa18.4■□□□□ 0.54
SKA3-206ENST00000475251 CDK19Q9BWU1 502 aa18.4■□□□□ 0.54
SKA3-206ENST00000475251 CCDC61Q9Y6R9 512 aa18.4■□□□□ 0.54
SKA3-206ENST00000475251 TOPAZ1Q8N9V7 1692 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 NUTM2GQ5VZR2 741 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 TCP11L2Q8N4U5 519 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 ABTB2Q8N961 1025 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 THRAP3Q9Y2W1 955 aaKnown RBP18.38■□□□□ 0.53
SKA3-206ENST00000475251 ACEP12821 1306 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 CPDO75976 1380 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 NRKQ7Z2Y5 1582 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 RREB1Q92766 1687 aa18.38■□□□□ 0.53
SKA3-206ENST00000475251 PLEKHG3A1L390 1219 aa18.37■□□□□ 0.53
SKA3-206ENST00000475251 NLRP13Q86W25 1043 aa18.35■□□□□ 0.53
SKA3-206ENST00000475251 NUP188Q5SRE5 1749 aa18.35■□□□□ 0.53
SKA3-206ENST00000475251 CAMTA1Q9Y6Y1 1673 aa18.34■□□□□ 0.53
SKA3-206ENST00000475251 USP19O94966 1318 aa18.34■□□□□ 0.53
SKA3-206ENST00000475251 LARP1Q6PKG0 1096 aaKnown RBP18.34■□□□□ 0.53
SKA3-206ENST00000475251 KIAA1210Q9ULL0 1709 aa18.34■□□□□ 0.53
SKA3-206ENST00000475251 LMO7Q8WWI1 1683 aa18.34■□□□□ 0.53
SKA3-206ENST00000475251 BRD4O60885 1362 aaPredicted RBP18.33■□□□□ 0.53
SKA3-206ENST00000475251 DCAF8L1A6NGE4 600 aa18.32■□□□□ 0.52
SKA3-206ENST00000475251 PARP4Q9UKK3 1724 aaKnown RBP18.32■□□□□ 0.52
SKA3-206ENST00000475251 GCP02774 474 aa18.31■□□□□ 0.52
SKA3-206ENST00000475251 PPP1R1BQ9UD71 204 aaPredicted RBP18.31■□□□□ 0.52
SKA3-206ENST00000475251 SRPK2P78362 688 aaKnown RBP18.3■□□□□ 0.52
SKA3-206ENST00000475251 SPON1Q9HCB6 807 aa18.3■□□□□ 0.52
SKA3-206ENST00000475251 COL5A2P05997 1499 aaPredicted RBP18.3■□□□□ 0.52
SKA3-206ENST00000475251 OVOS2A0A0G2JMS6 1433 aa18.3■□□□□ 0.52
SKA3-206ENST00000475251 OVOS2A0A0J9YW53 1432 aa18.3■□□□□ 0.52
SKA3-206ENST00000475251 CRB1P82279 1406 aa18.3■□□□□ 0.52
SKA3-206ENST00000475251 OVOS2Q6IE36 1432 aa18.3■□□□□ 0.52
SKA3-206ENST00000475251 PPIP5K1Q6PFW1 1433 aa18.3■□□□□ 0.52
SKA3-206ENST00000475251 YY1P25490 414 aa18.28■□□□□ 0.52
SKA3-206ENST00000475251 RGPD3A6NKT7 1758 aaPredicted RBP18.27■□□□□ 0.52
SKA3-206ENST00000475251 RGPD4Q7Z3J3 1758 aa18.27■□□□□ 0.52
SKA3-206ENST00000475251 KCNQ2O43526 872 aa18.27■□□□□ 0.52
SKA3-206ENST00000475251 NINLQ9Y2I6 1382 aa18.27■□□□□ 0.51
SKA3-206ENST00000475251 CENPJQ9HC77 1338 aaPredicted RBP18.25■□□□□ 0.51
SKA3-206ENST00000475251 AATKQ6ZMQ8 1374 aa18.25■□□□□ 0.51
SKA3-206ENST00000475251 PLSCR1O15162 318 aa18.24■□□□□ 0.51
SKA3-206ENST00000475251 DDB1Q16531 1140 aa18.24■□□□□ 0.51
SKA3-206ENST00000475251 ZBTB7CA1YPR0 619 aa18.23■□□□□ 0.51
SKA3-206ENST00000475251 NLRP6P59044 892 aa18.23■□□□□ 0.51
SKA3-206ENST00000475251 CDCA7Q9BWT1 371 aaPredicted RBP18.23■□□□□ 0.51
SKA3-206ENST00000475251 PEAK1Q9H792 1746 aa18.23■□□□□ 0.51
SKA3-206ENST00000475251 USP6P35125 1406 aa18.23■□□□□ 0.51
SKA3-206ENST00000475251 TOM1L2Q6ZVM7 507 aa18.22■□□□□ 0.51
SKA3-206ENST00000475251 CABP2Q9NPB3 220 aa18.22■□□□□ 0.51
SKA3-206ENST00000475251 LRRC37A3O60309 1634 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms