RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	SLIT2	O94813	1529 aa		21.01	■□□□□ 0.95
SSR4-208	ENST00000471880	EVC2	Q86UK5	1308 aa		21.01	■□□□□ 0.95
SSR4-208	ENST00000471880	CCER1	Q8TC90	406 aa	Predicted RBP	21	■□□□□ 0.95
SSR4-208	ENST00000471880	NWD2	Q9ULI1	1742 aa		21	■□□□□ 0.95
SSR4-208	ENST00000471880	ACE	P12821	1306 aa		21	■□□□□ 0.95
SSR4-208	ENST00000471880	PHRF1	Q9P1Y6	1649 aa	Known RBP	21	■□□□□ 0.95
SSR4-208	ENST00000471880	NRAP	Q86VF7	1730 aa		20.99	■□□□□ 0.95
SSR4-208	ENST00000471880	GLI3	P10071	1580 aa		20.99	■□□□□ 0.95
SSR4-208	ENST00000471880	PPIP5K1	Q6PFW1	1433 aa		20.99	■□□□□ 0.95
SSR4-208	ENST00000471880	RALGAPB	Q86X10	1494 aa		20.99	■□□□□ 0.95
SSR4-208	ENST00000471880	POLR3A	O14802	1390 aa	Predicted RBP	20.98	■□□□□ 0.95
SSR4-208	ENST00000471880	RBM6	P78332	1123 aa	Known RBP	20.98	■□□□□ 0.95
SSR4-208	ENST00000471880	NUTM2G	Q5VZR2	741 aa		20.96	■□□□□ 0.95
SSR4-208	ENST00000471880	BRWD3	Q6RI45	1802 aa		20.96	■□□□□ 0.95
SSR4-208	ENST00000471880	PLEKHG3	A1L390	1219 aa		20.94	■□□□□ 0.94
SSR4-208	ENST00000471880	CABP1	Q9NZU7	370 aa		20.94	■□□□□ 0.94
SSR4-208	ENST00000471880	TRPC5	Q9UL62	973 aa	Predicted RBP	20.94	■□□□□ 0.94
SSR4-208	ENST00000471880	AKAP12	Q02952	1782 aa		20.94	■□□□□ 0.94
SSR4-208	ENST00000471880	COL14A1	Q05707	1796 aa	Known RBP	20.92	■□□□□ 0.94
SSR4-208	ENST00000471880	CCDC9	Q9Y3X0	531 aa	Known RBP	20.92	■□□□□ 0.94
SSR4-208	ENST00000471880	FAM83G	A6ND36	823 aa		20.91	■□□□□ 0.94
SSR4-208	ENST00000471880	ABTB2	Q8N961	1025 aa		20.91	■□□□□ 0.94
SSR4-208	ENST00000471880	NRK	Q7Z2Y5	1582 aa		20.9	■□□□□ 0.94
SSR4-208	ENST00000471880	UNC5CL	Q8IV45	518 aa		20.89	■□□□□ 0.93
SSR4-208	ENST00000471880	UPF1	Q92900	1129 aa	Known RBP eCLIP	20.89	■□□□□ 0.93
SSR4-208	ENST00000471880	CLSPN	Q9HAW4	1339 aa		20.88	■□□□□ 0.93
SSR4-208	ENST00000471880	PIK3C2A	O00443	1686 aa		20.88	■□□□□ 0.93
SSR4-208	ENST00000471880	TMC1	Q8TDI8	760 aa		20.87	■□□□□ 0.93
SSR4-208	ENST00000471880	GJD4	Q96KN9	370 aa	Predicted RBP	20.87	■□□□□ 0.93
SSR4-208	ENST00000471880	ATAD2	Q6PL18	1390 aa		20.86	■□□□□ 0.93
SSR4-208	ENST00000471880	PRDM11	Q9NQV5	511 aa		20.86	■□□□□ 0.93
SSR4-208	ENST00000471880	USP6	P35125	1406 aa		20.86	■□□□□ 0.93
SSR4-208	ENST00000471880	MON2	Q7Z3U7	1717 aa		20.85	■□□□□ 0.93
SSR4-208	ENST00000471880	ST20-MTHFS	A0A0A6YYL1	179 aa		20.85	■□□□□ 0.93
SSR4-208	ENST00000471880	ZBTB7C	A1YPR0	619 aa		20.85	■□□□□ 0.93
SSR4-208	ENST00000471880	EP400	Q96L91	3159 aa		20.85	■□□□□ 0.93
SSR4-208	ENST00000471880	SSH2	Q76I76	1423 aa		20.85	■□□□□ 0.93
SSR4-208	ENST00000471880	ZC3H6	P61129	1189 aa	Known RBP	20.84	■□□□□ 0.93
SSR4-208	ENST00000471880	SBNO2	Q9Y2G9	1366 aa		20.84	■□□□□ 0.93
SSR4-208	ENST00000471880		A0A0G2JS52	829 aa		20.83	■□□□□ 0.93
SSR4-208	ENST00000471880	MYT1	Q01538	1121 aa		20.83	■□□□□ 0.93
SSR4-208	ENST00000471880	BTG4	Q9NY30	223 aa		20.83	■□□□□ 0.93
SSR4-208	ENST00000471880	KIAA0232	Q92628	1395 aa		20.83	■□□□□ 0.92
SSR4-208	ENST00000471880	CHRNA2	Q15822	529 aa		20.82	■□□□□ 0.92
SSR4-208	ENST00000471880	NLRP13	Q86W25	1043 aa		20.82	■□□□□ 0.92
SSR4-208	ENST00000471880	TIMELESS	Q9UNS1	1208 aa		20.82	■□□□□ 0.92
SSR4-208	ENST00000471880	LMO7	Q8WWI1	1683 aa		20.82	■□□□□ 0.92
SSR4-208	ENST00000471880	USP19	O94966	1318 aa		20.81	■□□□□ 0.92
SSR4-208	ENST00000471880	NLRP6	P59044	892 aa		20.81	■□□□□ 0.92
SSR4-208	ENST00000471880	VPS72	Q15906	364 aa		20.81	■□□□□ 0.92
SSR4-208	ENST00000471880	USP47	Q96K76	1375 aa		20.81	■□□□□ 0.92
SSR4-208	ENST00000471880	ZNF692	Q9BU19	519 aa	Predicted RBP	20.79	■□□□□ 0.92
SSR4-208	ENST00000471880	KTN1	Q86UP2	1357 aa	Known RBP	20.79	■□□□□ 0.92
SSR4-208	ENST00000471880	CD163L1	Q9NR16	1453 aa		20.79	■□□□□ 0.92
SSR4-208	ENST00000471880	CPSF1	Q10570	1443 aa	Known RBP	20.78	■□□□□ 0.92
SSR4-208	ENST00000471880	SLIT3	O75094	1523 aa		20.78	■□□□□ 0.92
SSR4-208	ENST00000471880	RGPD5	Q99666	1765 aa		20.78	■□□□□ 0.92
SSR4-208	ENST00000471880	CAMTA1	Q9Y6Y1	1673 aa		20.78	■□□□□ 0.92
SSR4-208	ENST00000471880	SOX12	O15370	315 aa		20.78	■□□□□ 0.92
SSR4-208	ENST00000471880	STRN4	Q9NRL3	753 aa		20.78	■□□□□ 0.92
SSR4-208	ENST00000471880	COL18A1	P39060	1754 aa		20.77	■□□□□ 0.92
SSR4-208	ENST00000471880	BRD4	O60885	1362 aa	Predicted RBP	20.77	■□□□□ 0.92
SSR4-208	ENST00000471880	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	20.77	■□□□□ 0.92
SSR4-208	ENST00000471880	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	20.77	■□□□□ 0.92
SSR4-208	ENST00000471880	TESK2	Q96S53	571 aa		20.76	■□□□□ 0.91
SSR4-208	ENST00000471880	SLC12A5	Q9H2X9	1139 aa		20.76	■□□□□ 0.91
SSR4-208	ENST00000471880	THSD7A	Q9UPZ6	1657 aa		20.76	■□□□□ 0.91
SSR4-208	ENST00000471880	TTC21B	Q7Z4L5	1316 aa		20.76	■□□□□ 0.91
SSR4-208	ENST00000471880	EVA1C	P58658	441 aa		20.75	■□□□□ 0.91
SSR4-208	ENST00000471880	SLC24A1	O60721	1099 aa		20.74	■□□□□ 0.91
SSR4-208	ENST00000471880	GC	P02774	474 aa		20.74	■□□□□ 0.91
SSR4-208	ENST00000471880	TMF1	P82094	1093 aa		20.74	■□□□□ 0.91
SSR4-208	ENST00000471880	ONECUT3	O60422	494 aa	Predicted RBP	20.73	■□□□□ 0.91
SSR4-208	ENST00000471880	SEPT12	Q8IYM1	358 aa		20.73	■□□□□ 0.91
SSR4-208	ENST00000471880	TERF2IP	Q9NYB0	399 aa		20.73	■□□□□ 0.91
SSR4-208	ENST00000471880	USP54	Q70EL1	1684 aa		20.73	■□□□□ 0.91
SSR4-208	ENST00000471880	CPD	O75976	1380 aa		20.72	■□□□□ 0.91
SSR4-208	ENST00000471880	SPATA31A5	Q5VU36	1347 aa		20.72	■□□□□ 0.91
SSR4-208	ENST00000471880	SPATA31A7	Q8IWB4	1347 aa		20.72	■□□□□ 0.91
SSR4-208	ENST00000471880	TTC21A	Q8NDW8	1320 aa		20.72	■□□□□ 0.91
SSR4-208	ENST00000471880	FAM98C	Q17RN3	349 aa	Known RBP	20.71	■□□□□ 0.91
SSR4-208	ENST00000471880	POLR3GL	Q9BT43	218 aa		20.71	■□□□□ 0.91
SSR4-208	ENST00000471880	USP35	Q9P2H5	1018 aa		20.71	■□□□□ 0.91
SSR4-208	ENST00000471880	ZRANB1	Q9UGI0	708 aa		20.69	■□□□□ 0.9
SSR4-208	ENST00000471880	NFAT5	O94916	1531 aa		20.68	■□□□□ 0.9
SSR4-208	ENST00000471880	NME9	Q86XW9	330 aa		20.67	■□□□□ 0.9
SSR4-208	ENST00000471880	SPATA31A1	Q5TZJ5	1347 aa		20.67	■□□□□ 0.9
SSR4-208	ENST00000471880		A0A1W2PP64	1363 aa		20.67	■□□□□ 0.9
SSR4-208	ENST00000471880	COL5A2	P05997	1499 aa	Predicted RBP	20.67	■□□□□ 0.9
SSR4-208	ENST00000471880	LTN1	O94822	1766 aa		20.67	■□□□□ 0.9
SSR4-208	ENST00000471880	CDCA8	Q53HL2	280 aa		20.66	■□□□□ 0.9
SSR4-208	ENST00000471880	KCNH5	Q8NCM2	988 aa		20.66	■□□□□ 0.9
SSR4-208	ENST00000471880	PUS7	Q96PZ0	661 aa	Known RBP	20.66	■□□□□ 0.9
SSR4-208	ENST00000471880	WNK3	Q9BYP7	1800 aa		20.66	■□□□□ 0.9
SSR4-208	ENST00000471880	EDC4	Q6P2E9	1401 aa	Known RBP	20.64	■□□□□ 0.89
SSR4-208	ENST00000471880	LARP1	Q6PKG0	1096 aa	Known RBP	20.64	■□□□□ 0.89
SSR4-208	ENST00000471880	MYOM1	P52179	1685 aa		20.64	■□□□□ 0.89
SSR4-208	ENST00000471880	NINL	Q9Y2I6	1382 aa		20.63	■□□□□ 0.89
SSR4-208	ENST00000471880	EIF4G2	P78344	907 aa	Known RBP eCLIP	20.62	■□□□□ 0.89
SSR4-208	ENST00000471880	FAM182B	Q5T319	152 aa		20.62	■□□□□ 0.89

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