RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 PTPRNQ16849 979 aa10.77□□□□□ -0.69
PTCD3-208ENST00000469585 NKX2-3Q8TAU0 364 aa10.77□□□□□ -0.69
PTCD3-208ENST00000469585 EPS8L1Q8TE68 723 aa10.76□□□□□ -0.69
PTCD3-208ENST00000469585 SLC6A16Q9GZN6 736 aa10.75□□□□□ -0.69
PTCD3-208ENST00000469585 NESP48681 1621 aa10.75□□□□□ -0.69
PTCD3-208ENST00000469585 RAD21O60216 631 aa10.74□□□□□ -0.69
PTCD3-208ENST00000469585 GPR37L1O60883 481 aa10.74□□□□□ -0.69
PTCD3-208ENST00000469585 F12P00748 615 aaPredicted RBP10.74□□□□□ -0.69
PTCD3-208ENST00000469585 NR6A1Q15406 480 aa10.74□□□□□ -0.69
PTCD3-208ENST00000469585 FNBP4Q8N3X1 1017 aaPredicted RBP10.74□□□□□ -0.69
PTCD3-208ENST00000469585 GDPD2Q9HCC8 539 aa10.74□□□□□ -0.69
PTCD3-208ENST00000469585 TBC1D2BQ9UPU7 963 aa10.74□□□□□ -0.69
PTCD3-208ENST00000469585 KCNC4Q03721 635 aa10.73□□□□□ -0.69
PTCD3-208ENST00000469585 NDUFB9Q9Y6M9 179 aa10.73□□□□□ -0.69
PTCD3-208ENST00000469585 PROSER2Q86WR7 435 aaPredicted RBP10.72□□□□□ -0.69
PTCD3-208ENST00000469585 NUDT12Q9BQG2 462 aa10.72□□□□□ -0.69
PTCD3-208ENST00000469585 CCDC88BA6NC98 1476 aa10.71□□□□□ -0.69
PTCD3-208ENST00000469585 CCNYL3P0C7X3 344 aa10.71□□□□□ -0.69
PTCD3-208ENST00000469585 PRM3Q9NNZ6 103 aa10.71□□□□□ -0.69
PTCD3-208ENST00000469585 EVA1BQ9NVM1 165 aa10.71□□□□□ -0.69
PTCD3-208ENST00000469585 CEP164Q9UPV0 1460 aa10.71□□□□□ -0.69
PTCD3-208ENST00000469585 CUX2O14529 1486 aa10.7□□□□□ -0.7
PTCD3-208ENST00000469585 CFTRP13569 1480 aa10.7□□□□□ -0.7
PTCD3-208ENST00000469585 TRAK2O60296 914 aa10.7□□□□□ -0.7
PTCD3-208ENST00000469585 S1PR4O95977 384 aa10.7□□□□□ -0.7
PTCD3-208ENST00000469585 MAP10Q9P2G4 905 aa10.7□□□□□ -0.7
PTCD3-208ENST00000469585 FANCD2Q9BXW9 1451 aa10.68□□□□□ -0.7
PTCD3-208ENST00000469585 ABL2P42684 1182 aa10.68□□□□□ -0.7
PTCD3-208ENST00000469585 KCNH2Q12809 1159 aa10.68□□□□□ -0.7
PTCD3-208ENST00000469585 IRF5Q13568 498 aa10.68□□□□□ -0.7
PTCD3-208ENST00000469585 CTHP32929 405 aa10.66□□□□□ -0.7
PTCD3-208ENST00000469585 PRDM2Q13029 1718 aa10.66□□□□□ -0.7
PTCD3-208ENST00000469585 KIF21AQ7Z4S6 1674 aa10.66□□□□□ -0.7
PTCD3-208ENST00000469585 MRC2Q9UBG0 1479 aa10.65□□□□□ -0.7
PTCD3-208ENST00000469585 PTCRAQ6ISU1 281 aaPredicted RBP10.64□□□□□ -0.71
PTCD3-208ENST00000469585 FKBPLQ9UIM3 349 aa10.64□□□□□ -0.71
PTCD3-208ENST00000469585 FCF1Q9Y324 198 aaKnown RBP10.64□□□□□ -0.71
PTCD3-208ENST00000469585 PPEF1O14829 653 aaPredicted RBP10.63□□□□□ -0.71
PTCD3-208ENST00000469585 CCDC24Q8N4L8 307 aa10.63□□□□□ -0.71
PTCD3-208ENST00000469585 RNF223E7ERA6 249 aa10.62□□□□□ -0.71
PTCD3-208ENST00000469585 IFFO2Q5TF58 517 aa10.62□□□□□ -0.71
PTCD3-208ENST00000469585 ZNF330Q9Y3S2 320 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-208ENST00000469585 ZC3H4Q9UPT8 1303 aaKnown RBP10.61□□□□□ -0.71
PTCD3-208ENST00000469585 PNMA1Q8ND90 353 aa10.61□□□□□ -0.71
PTCD3-208ENST00000469585 UNC93B1Q9H1C4 597 aa10.61□□□□□ -0.71
PTCD3-208ENST00000469585 C1orf115Q9H7X2 142 aa10.61□□□□□ -0.71
PTCD3-208ENST00000469585 ABCC8Q09428 1581 aa10.6□□□□□ -0.71
PTCD3-208ENST00000469585 PPP1R18Q6NYC8 613 aa10.6□□□□□ -0.71
PTCD3-208ENST00000469585 WWC1Q8IX03 1113 aa10.6□□□□□ -0.71
PTCD3-208ENST00000469585 ANKLE1Q8NAG6 615 aa10.6□□□□□ -0.71
PTCD3-208ENST00000469585 ARID3CA6NKF2 412 aa10.59□□□□□ -0.71
PTCD3-208ENST00000469585 GGCXP38435 758 aa10.59□□□□□ -0.71
PTCD3-208ENST00000469585 WASHC4Q2M389 1173 aa10.59□□□□□ -0.71
PTCD3-208ENST00000469585 ARMC2Q8NEN0 867 aa10.59□□□□□ -0.71
PTCD3-208ENST00000469585 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.59□□□□□ -0.71
PTCD3-208ENST00000469585 ZNF777Q9ULD5 760 aaPredicted RBP10.59□□□□□ -0.71
PTCD3-208ENST00000469585 THOC2Q8NI27 1593 aaKnown RBP10.59□□□□□ -0.71
PTCD3-208ENST00000469585 POM121CA8CG34 1229 aa10.58□□□□□ -0.72
PTCD3-208ENST00000469585 GPKOWQ92917 476 aaPredicted RBP eCLIP10.58□□□□□ -0.727e-7■■■□□ 16.8
PTCD3-208ENST00000469585 PLA2G2CQ5R387 149 aa10.57□□□□□ -0.72
PTCD3-208ENST00000469585 VAC14Q08AM6 782 aa10.56□□□□□ -0.72
PTCD3-208ENST00000469585 NBPF14Q5TI25 921 aa10.56□□□□□ -0.72
PTCD3-208ENST00000469585 PDXDC2PQ6P474 469 aa10.56□□□□□ -0.72
PTCD3-208ENST00000469585 WDR62O43379 1518 aa10.56□□□□□ -0.72
PTCD3-208ENST00000469585 FBXO45P0C2W1 286 aa10.55□□□□□ -0.72
PTCD3-208ENST00000469585 OCSTAMPQ9BR26 566 aa10.55□□□□□ -0.72
PTCD3-208ENST00000469585 ZBBXA8MT70 800 aa10.54□□□□□ -0.72
PTCD3-208ENST00000469585 NR1H3Q13133 447 aa10.54□□□□□ -0.72
PTCD3-208ENST00000469585 GPSM3Q9Y4H4 160 aa10.54□□□□□ -0.72
PTCD3-208ENST00000469585 BAP1Q92560 729 aa10.53□□□□□ -0.72
PTCD3-208ENST00000469585 SH3BP5LQ7L8J4 393 aa10.52□□□□□ -0.73
PTCD3-208ENST00000469585 ADAMTS19Q8TE59 1207 aa10.52□□□□□ -0.73
PTCD3-208ENST00000469585 PLA2G2EQ9NZK7 142 aa10.52□□□□□ -0.73
PTCD3-208ENST00000469585 PTK2Q05397 1052 aa10.51□□□□□ -0.73
PTCD3-208ENST00000469585 SH3RF1Q7Z6J0 888 aa10.51□□□□□ -0.73
PTCD3-208ENST00000469585 TRIM32Q13049 653 aa10.5□□□□□ -0.73
PTCD3-208ENST00000469585 LINC01559Q495D7 138 aa10.5□□□□□ -0.73
PTCD3-208ENST00000469585 ZNF511Q8NB15 262 aa10.5□□□□□ -0.73
PTCD3-208ENST00000469585 GLMNQ92990 594 aa10.5□□□□□ -0.73
PTCD3-208ENST00000469585 EMID1Q96A84 441 aaPredicted RBP10.5□□□□□ -0.73
PTCD3-208ENST00000469585 ALG2Q9H553 416 aa10.5□□□□□ -0.73
PTCD3-208ENST00000469585 DNMBPQ6XZF7 1577 aa10.5□□□□□ -0.73
PTCD3-208ENST00000469585 ZBTB24O43167 697 aaPredicted RBP10.49□□□□□ -0.73
PTCD3-208ENST00000469585 SOX11P35716 441 aa10.49□□□□□ -0.73
PTCD3-208ENST00000469585 RPIAP49247 311 aa10.49□□□□□ -0.73
PTCD3-208ENST00000469585 SH3BP2P78314 561 aa10.49□□□□□ -0.73
PTCD3-208ENST00000469585 URB2Q14146 1524 aaKnown RBP10.48□□□□□ -0.73
PTCD3-208ENST00000469585 C4orf48Q5BLP8 95 aa10.48□□□□□ -0.73
PTCD3-208ENST00000469585 HDGFL1Q5TGJ6 251 aa10.48□□□□□ -0.73
PTCD3-208ENST00000469585 FOXJ1Q92949 421 aa10.48□□□□□ -0.73
PTCD3-208ENST00000469585 TOPBP1Q92547 1522 aa10.48□□□□□ -0.73
PTCD3-208ENST00000469585 A0A0G2JS52 829 aa10.47□□□□□ -0.73
PTCD3-208ENST00000469585 EIF4G2P78344 907 aaKnown RBP eCLIP10.47□□□□□ -0.73
PTCD3-208ENST00000469585 LIAT1Q6ZQX7 453 aa10.47□□□□□ -0.73
PTCD3-208ENST00000469585 CCDC82Q8N4S0 544 aa10.47□□□□□ -0.73
PTCD3-208ENST00000469585 CALR3Q96L12 384 aaKnown RBP10.47□□□□□ -0.73
PTCD3-208ENST00000469585 ARHGAP9Q9BRR9 750 aa10.47□□□□□ -0.73
PTCD3-208ENST00000469585 IFT140Q96RY7 1462 aa10.47□□□□□ -0.73
PTCD3-208ENST00000469585 SKOR1P84550 965 aa10.46□□□□□ -0.73
PTCD3-208ENST00000469585 BPHLQ86WA6 291 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms