RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 TTC21BQ7Z4L5 1316 aa17.62■□□□□ 0.41
COL4A1-202ENST00000467182 PIK3C2AO00443 1686 aa17.61■□□□□ 0.41
COL4A1-202ENST00000467182 NME9Q86XW9 330 aa17.61■□□□□ 0.41
COL4A1-202ENST00000467182 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL4A1-202ENST00000467182 MSH6P52701 1360 aa17.61■□□□□ 0.41
COL4A1-202ENST00000467182 MARF1Q9Y4F3 1742 aaKnown RBP17.61■□□□□ 0.41
COL4A1-202ENST00000467182 NGDNQ8NEJ9 315 aaKnown RBP17.6■□□□□ 0.41
COL4A1-202ENST00000467182 ORAI2Q96SN7 254 aa17.6■□□□□ 0.41
COL4A1-202ENST00000467182 TRPM3Q9HCF6 1732 aaPredicted RBP17.59■□□□□ 0.41
COL4A1-202ENST00000467182 OVOS2A0A0J9YW53 1432 aa17.59■□□□□ 0.41
COL4A1-202ENST00000467182 OVOS2Q6IE36 1432 aa17.59■□□□□ 0.41
COL4A1-202ENST00000467182 PNISRQ8TF01 805 aaKnown RBP17.59■□□□□ 0.41
COL4A1-202ENST00000467182 ZRANB1Q9UGI0 708 aa17.59■□□□□ 0.41
COL4A1-202ENST00000467182 TTC21AQ8NDW8 1320 aa17.58■□□□□ 0.4
COL4A1-202ENST00000467182 ATF3P18847 181 aa17.58■□□□□ 0.4
COL4A1-202ENST00000467182 ESCO1Q5FWF5 840 aa17.58■□□□□ 0.4
COL4A1-202ENST00000467182 CADPS2Q86UW7 1296 aa17.58■□□□□ 0.4
COL4A1-202ENST00000467182 USP31Q70CQ4 1352 aa17.56■□□□□ 0.4
COL4A1-202ENST00000467182 SCAF1Q9H7N4 1312 aaKnown RBP17.56■□□□□ 0.4
COL4A1-202ENST00000467182 YTHDC1Q96MU7 727 aaKnown RBP17.56■□□□□ 0.4
COL4A1-202ENST00000467182 SHPRHQ149N8 1683 aa17.55■□□□□ 0.4
COL4A1-202ENST00000467182 TNNT2P45379 298 aaPredicted RBP17.54■□□□□ 0.4
COL4A1-202ENST00000467182 MAP2P11137 1827 aaKnown RBP17.53■□□□□ 0.4
COL4A1-202ENST00000467182 SMG6Q86US8 1419 aaKnown RBP17.53■□□□□ 0.4
COL4A1-202ENST00000467182 AATKQ6ZMQ8 1374 aa17.53■□□□□ 0.4
COL4A1-202ENST00000467182 COL3A1P02461 1466 aaPredicted RBP17.52■□□□□ 0.4
COL4A1-202ENST00000467182 FAM9BQ8IZU0 186 aa17.52■□□□□ 0.4
COL4A1-202ENST00000467182 ALS2Q96Q42 1657 aa17.52■□□□□ 0.39
COL4A1-202ENST00000467182 COG3Q96JB2 828 aa17.51■□□□□ 0.39
COL4A1-202ENST00000467182 FOXO3O43524 673 aa17.5■□□□□ 0.39
COL4A1-202ENST00000467182 MTHFSP49914 203 aa17.5■□□□□ 0.39
COL4A1-202ENST00000467182 PXDNQ92626 1479 aa17.5■□□□□ 0.39
COL4A1-202ENST00000467182 FBLN1P23142 703 aa17.49■□□□□ 0.39
COL4A1-202ENST00000467182 PSME1Q06323 249 aa17.49■□□□□ 0.39
COL4A1-202ENST00000467182 INSRP06213 1382 aa17.49■□□□□ 0.39
COL4A1-202ENST00000467182 PNPLA6Q8IY17 1366 aa17.49■□□□□ 0.39
COL4A1-202ENST00000467182 PEAK1Q9H792 1746 aa17.48■□□□□ 0.39
COL4A1-202ENST00000467182 AEBP2Q6ZN18 517 aaPredicted RBP17.48■□□□□ 0.39
COL4A1-202ENST00000467182 BRINP3Q76B58 766 aa17.48■□□□□ 0.39
COL4A1-202ENST00000467182 SLAIN2Q9P270 581 aa17.48■□□□□ 0.39
COL4A1-202ENST00000467182 POLKQ9UBT6 870 aa17.48■□□□□ 0.39
COL4A1-202ENST00000467182 KRT28Q7Z3Y7 464 aa17.47■□□□□ 0.39
COL4A1-202ENST00000467182 NHSL1Q5SYE7 1610 aa17.47■□□□□ 0.39
COL4A1-202ENST00000467182 BLMP54132 1417 aaPredicted RBP17.47■□□□□ 0.39
COL4A1-202ENST00000467182 XPCQ01831 940 aaPredicted RBP17.46■□□□□ 0.39
COL4A1-202ENST00000467182 CDK12Q9NYV4 1490 aaPredicted RBP17.45■□□□□ 0.38
COL4A1-202ENST00000467182 SBNO1A3KN83 1393 aa17.45■□□□□ 0.38
COL4A1-202ENST00000467182 DDX17Q92841 729 aaKnown RBP17.45■□□□□ 0.38
COL4A1-202ENST00000467182 SLIT3O75094 1523 aa17.45■□□□□ 0.38
COL4A1-202ENST00000467182 NFAT5O94916 1531 aa17.44■□□□□ 0.38
COL4A1-202ENST00000467182 PAK3O75914 559 aaPredicted RBP17.44■□□□□ 0.38
COL4A1-202ENST00000467182 NLRP6P59044 892 aa17.44■□□□□ 0.38
COL4A1-202ENST00000467182 ABTB2Q8N961 1025 aa17.44■□□□□ 0.38
COL4A1-202ENST00000467182 EMILIN1Q9Y6C2 1016 aa17.44■□□□□ 0.38
COL4A1-202ENST00000467182 NPHP3Q7Z494 1330 aa17.44■□□□□ 0.38
COL4A1-202ENST00000467182 CRYBG1Q9Y4K1 1723 aa17.44■□□□□ 0.38
COL4A1-202ENST00000467182 ADAMTS8Q9UP79 889 aa17.43■□□□□ 0.38
COL4A1-202ENST00000467182 MED1Q15648 1581 aaPredicted RBP17.42■□□□□ 0.38
COL4A1-202ENST00000467182 RRS1Q15050 365 aaKnown RBP17.42■□□□□ 0.38
COL4A1-202ENST00000467182 NUTM2GQ5VZR2 741 aa17.42■□□□□ 0.38
COL4A1-202ENST00000467182 CFAP53Q96M91 514 aa17.42■□□□□ 0.38
COL4A1-202ENST00000467182 ROBO1Q9Y6N7 1651 aa17.41■□□□□ 0.38
COL4A1-202ENST00000467182 USP19O94966 1318 aa17.41■□□□□ 0.38
COL4A1-202ENST00000467182 PHRF1Q9P1Y6 1649 aaKnown RBP17.4■□□□□ 0.38
COL4A1-202ENST00000467182 TNS3Q68CZ2 1445 aa17.4■□□□□ 0.38
COL4A1-202ENST00000467182 HNRNPUQ00839 825 aaKnown RBP eCLIP17.4■□□□□ 0.38
COL4A1-202ENST00000467182 SOS2Q07890 1332 aaPredicted RBP17.4■□□□□ 0.38
COL4A1-202ENST00000467182 LTN1O94822 1766 aa17.4■□□□□ 0.38
COL4A1-202ENST00000467182 WDR43Q15061 677 aaKnown RBP eCLIP17.39■□□□□ 0.37
COL4A1-202ENST00000467182 MAP3K19Q56UN5 1328 aa17.39■□□□□ 0.37
COL4A1-202ENST00000467182 SPATA31A3Q5VYP0 1347 aa17.38■□□□□ 0.37
COL4A1-202ENST00000467182 AHDC1Q5TGY3 1603 aaPredicted RBP17.37■□□□□ 0.37
COL4A1-202ENST00000467182 RGPD1P0DJD0 1748 aa17.37■□□□□ 0.37
COL4A1-202ENST00000467182 IQSEC2Q5JU85 1478 aa17.37■□□□□ 0.37
COL4A1-202ENST00000467182 PPM1GO15355 546 aaPredicted RBP17.35■□□□□ 0.37
COL4A1-202ENST00000467182 SOX12O15370 315 aa17.35■□□□□ 0.37
COL4A1-202ENST00000467182 DIAPH1O60610 1272 aaKnown RBP17.35■□□□□ 0.37
COL4A1-202ENST00000467182 IL13P35225 146 aa17.35■□□□□ 0.37
COL4A1-202ENST00000467182 ZBED9Q6R2W3 1325 aa17.35■□□□□ 0.37
COL4A1-202ENST00000467182 KIF24Q5T7B8 1368 aa17.35■□□□□ 0.37
COL4A1-202ENST00000467182 FLT4P35916 1363 aa17.34■□□□□ 0.37
COL4A1-202ENST00000467182 ABCA3Q99758 1704 aa17.34■□□□□ 0.37
COL4A1-202ENST00000467182 ARHGEF10O15013 1369 aa17.33■□□□□ 0.36
COL4A1-202ENST00000467182 CENPBP07199 599 aaPredicted RBP17.33■□□□□ 0.36
COL4A1-202ENST00000467182 KCNH5Q8NCM2 988 aa17.33■□□□□ 0.36
COL4A1-202ENST00000467182 RTL1A6NKG5 1358 aa17.32■□□□□ 0.36
COL4A1-202ENST00000467182 GCP02774 474 aa17.32■□□□□ 0.36
COL4A1-202ENST00000467182 HSP90AB2PQ58FF8 381 aa17.32■□□□□ 0.36
COL4A1-202ENST00000467182 HOXC9P31274 260 aa17.31■□□□□ 0.36
COL4A1-202ENST00000467182 EIF4A2Q14240 407 aaKnown RBP17.31■□□□□ 0.36
COL4A1-202ENST00000467182 LMOD2Q6P5Q4 547 aa17.31■□□□□ 0.36
COL4A1-202ENST00000467182 NUDCQ9Y266 331 aa17.31■□□□□ 0.36
COL4A1-202ENST00000467182 COL18A1P39060 1754 aa17.3■□□□□ 0.36
COL4A1-202ENST00000467182 SENP3-EIF4A1A0A087X0R7 540 aa17.3■□□□□ 0.36
COL4A1-202ENST00000467182 ARHGEF25Q86VW2 580 aa17.3■□□□□ 0.36
COL4A1-202ENST00000467182 CCDC146Q8IYE0 955 aa17.3■□□□□ 0.36
COL4A1-202ENST00000467182 U2SURPO15042 1029 aaKnown RBP17.29■□□□□ 0.36
COL4A1-202ENST00000467182 U2AF1L5P0DN76 240 aaPredicted RBP17.29■□□□□ 0.36
COL4A1-202ENST00000467182 U2AF1Q01081 240 aaKnown RBP eCLIP17.29■□□□□ 0.36
COL4A1-202ENST00000467182 PLEKHF1Q96S99 279 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms