RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NINLQ9Y2I6 1382 aa17.54■□□□□ 0.4
SQSTM1-206ENST00000466342 KCNQ2O43526 872 aa17.54■□□□□ 0.4
SQSTM1-206ENST00000466342 MPHOSPH9Q99550 1183 aa17.54■□□□□ 0.4
SQSTM1-206ENST00000466342 CAMTA1Q9Y6Y1 1673 aa17.54■□□□□ 0.4
SQSTM1-206ENST00000466342 ADGRF5Q8IZF2 1346 aa17.53■□□□□ 0.4
SQSTM1-206ENST00000466342 TMEM132EQ6IEE7 984 aa17.53■□□□□ 0.4
SQSTM1-206ENST00000466342 ZNF784Q8NCA9 323 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-206ENST00000466342 SIRT1Q96EB6 747 aa17.51■□□□□ 0.39
SQSTM1-206ENST00000466342 SENP3-EIF4A1A0A087X0R7 540 aa17.5■□□□□ 0.39
SQSTM1-206ENST00000466342 CHD4Q14839 1912 aa17.5■□□□□ 0.39
SQSTM1-206ENST00000466342 TRPM3Q9HCF6 1732 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-206ENST00000466342 ALS2Q96Q42 1657 aa17.49■□□□□ 0.39
SQSTM1-206ENST00000466342 PMFBP1Q8TBY8 1022 aa17.48■□□□□ 0.39
SQSTM1-206ENST00000466342 SPATA31A1Q5TZJ5 1347 aa17.47■□□□□ 0.39
SQSTM1-206ENST00000466342 YTHDC2Q9H6S0 1430 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-206ENST00000466342 CRYBG1Q9Y4K1 1723 aa17.46■□□□□ 0.39
SQSTM1-206ENST00000466342 C1QTNF8P60827 252 aa17.44■□□□□ 0.38
SQSTM1-206ENST00000466342 PDE3BQ13370 1112 aa17.44■□□□□ 0.38
SQSTM1-206ENST00000466342 PRDM11Q9NQV5 511 aa17.44■□□□□ 0.38
SQSTM1-206ENST00000466342 RGL3Q3MIN7 710 aa17.43■□□□□ 0.38
SQSTM1-206ENST00000466342 SPATA31E1Q6ZUB1 1445 aa17.43■□□□□ 0.38
SQSTM1-206ENST00000466342 ANKRD30BQ9BXX2 1392 aa17.42■□□□□ 0.38
SQSTM1-206ENST00000466342 GPRASP1Q5JY77 1395 aa17.41■□□□□ 0.38
SQSTM1-206ENST00000466342 ANKARQ7Z5J8 1434 aa17.41■□□□□ 0.38
SQSTM1-206ENST00000466342 PIK3C2GO75747 1445 aa17.4■□□□□ 0.38
SQSTM1-206ENST00000466342 BARGINQ6ZT62 677 aa17.4■□□□□ 0.38
SQSTM1-206ENST00000466342 STRN4Q9NRL3 753 aa17.4■□□□□ 0.38
SQSTM1-206ENST00000466342 UTRNP46939 3433 aa17.4■□□□□ 0.38
SQSTM1-206ENST00000466342 CASZ1Q86V15 1759 aa17.39■□□□□ 0.37
SQSTM1-206ENST00000466342 SAFB2Q14151 953 aaKnown RBP eCLIP17.38■□□□□ 0.37
SQSTM1-206ENST00000466342 PRAM1Q96QH2 718 aa17.38■□□□□ 0.37
SQSTM1-206ENST00000466342 USP35Q9P2H5 1018 aa17.38■□□□□ 0.37
SQSTM1-206ENST00000466342 NRKQ7Z2Y5 1582 aa17.37■□□□□ 0.37
SQSTM1-206ENST00000466342 C14orf93Q9H972 538 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-206ENST00000466342 RGPD3A6NKT7 1758 aaPredicted RBP17.37■□□□□ 0.37
SQSTM1-206ENST00000466342 RGPD4Q7Z3J3 1758 aa17.37■□□□□ 0.37
SQSTM1-206ENST00000466342 DHX57Q6P158 1386 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-206ENST00000466342 SBF2Q86WG5 1849 aa17.36■□□□□ 0.37
SQSTM1-206ENST00000466342 CHRNA2Q15822 529 aa17.36■□□□□ 0.37
SQSTM1-206ENST00000466342 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
SQSTM1-206ENST00000466342 KIAA0232Q92628 1395 aa17.36■□□□□ 0.37
SQSTM1-206ENST00000466342 C11orf95C9JLR9 678 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-206ENST00000466342 PAK3O75914 559 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-206ENST00000466342 EVA1CP58658 441 aa17.35■□□□□ 0.37
SQSTM1-206ENST00000466342 PLSCR1O15162 318 aa17.34■□□□□ 0.37
SQSTM1-206ENST00000466342 MYOM1P52179 1685 aa17.34■□□□□ 0.37
SQSTM1-206ENST00000466342 PHRF1Q9P1Y6 1649 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-206ENST00000466342 POGKQ9P215 609 aa17.33■□□□□ 0.36
SQSTM1-206ENST00000466342 PTGER2P43116 358 aa17.32■□□□□ 0.36
SQSTM1-206ENST00000466342 TCP11L2Q8N4U5 519 aa17.32■□□□□ 0.36
SQSTM1-206ENST00000466342 NGDNQ8NEJ9 315 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-206ENST00000466342 SYT17Q9BSW7 474 aa17.32■□□□□ 0.36
SQSTM1-206ENST00000466342 PARP4Q9UKK3 1724 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-206ENST00000466342 SSH2Q76I76 1423 aa17.31■□□□□ 0.36
SQSTM1-206ENST00000466342 ZC3H6P61129 1189 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-206ENST00000466342 CFAP70Q5T0N1 1121 aa17.31■□□□□ 0.36
SQSTM1-206ENST00000466342 PDGFDQ9GZP0 370 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-206ENST00000466342 ANO8Q9HCE9 1232 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-206ENST00000466342 PRR36Q9H6K5 1346 aa17.3■□□□□ 0.36
SQSTM1-206ENST00000466342 ZBTB7AO95365 584 aa17.3■□□□□ 0.36
SQSTM1-206ENST00000466342 FHDC1Q9C0D6 1143 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-206ENST00000466342 THRAP3Q9Y2W1 955 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-206ENST00000466342 DLC1Q96QB1 1528 aa17.3■□□□□ 0.36
SQSTM1-206ENST00000466342 EIF3AQ14152 1382 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-206ENST00000466342 LARP1Q6PKG0 1096 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-206ENST00000466342 ATF5Q9Y2D1 282 aaPredicted RBP17.29■□□□□ 0.36
SQSTM1-206ENST00000466342 PEAK1Q9H792 1746 aa17.28■□□□□ 0.36
SQSTM1-206ENST00000466342 HIRIP3Q9BW71 556 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-206ENST00000466342 CEP350Q5VT06 3117 aa17.28■□□□□ 0.36
SQSTM1-206ENST00000466342 TULP4Q9NRJ4 1543 aa17.27■□□□□ 0.36
SQSTM1-206ENST00000466342 STAC3Q96MF2 364 aa17.26■□□□□ 0.35
SQSTM1-206ENST00000466342 BCL11BQ9C0K0 894 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-206ENST00000466342 ITSN1Q15811 1721 aa17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 OVOS2A0A0G2JMS6 1433 aa17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 OVOS2A0A0J9YW53 1432 aa17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 OVOS2Q6IE36 1432 aa17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 WASLO00401 505 aaPredicted RBP17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 PROM2Q8N271 834 aa17.25■□□□□ 0.35
SQSTM1-206ENST00000466342 LMO7Q8WWI1 1683 aa17.24■□□□□ 0.35
SQSTM1-206ENST00000466342 MINK1Q8N4C8 1332 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-206ENST00000466342 NUTM2GQ5VZR2 741 aa17.23■□□□□ 0.35
SQSTM1-206ENST00000466342 ATP7BP35670 1465 aa17.23■□□□□ 0.35
SQSTM1-206ENST00000466342 SGIP1Q9BQI5 828 aa17.22■□□□□ 0.35
SQSTM1-206ENST00000466342 MTFR1LQ9H019 292 aa17.22■□□□□ 0.35
SQSTM1-206ENST00000466342 TRAK1Q9UPV9 953 aa17.21■□□□□ 0.35
SQSTM1-206ENST00000466342 CPDO75976 1380 aa17.2■□□□□ 0.34
SQSTM1-206ENST00000466342 SLC15A2Q16348 729 aa17.2■□□□□ 0.34
SQSTM1-206ENST00000466342 PTF1AQ7RTS3 328 aa17.2■□□□□ 0.34
SQSTM1-206ENST00000466342 DCAF11Q8TEB1 546 aa17.2■□□□□ 0.34
SQSTM1-206ENST00000466342 STK32BQ9NY57 414 aa17.2■□□□□ 0.34
SQSTM1-206ENST00000466342 DDB1Q16531 1140 aa17.18■□□□□ 0.34
SQSTM1-206ENST00000466342 NUDT16Q96DE0 195 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-206ENST00000466342 ARXQ96QS3 562 aa17.18■□□□□ 0.34
SQSTM1-206ENST00000466342 KDM2AQ9Y2K7 1162 aa17.18■□□□□ 0.34
SQSTM1-206ENST00000466342 LRRC37A3O60309 1634 aa17.18■□□□□ 0.34
SQSTM1-206ENST00000466342 AKAP12Q02952 1782 aa17.17■□□□□ 0.34
SQSTM1-206ENST00000466342 ADGRB1O14514 1584 aa17.17■□□□□ 0.34
SQSTM1-206ENST00000466342 CRB1P82279 1406 aa17.17■□□□□ 0.34
SQSTM1-206ENST00000466342 GPR162Q16538 588 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms