RNA–Protein interactions for RNA: ENST00000465522.5

ITGA4-204, Transcript of integrin subunit alpha 4, humanhuman

TSL 2

Gene ITGA4, Length 1,721 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-204ENST00000465522 BRD4O60885 1362 aaPredicted RBP29.33■■■□□ 2.29
ITGA4-204ENST00000465522 TTC21BQ7Z4L5 1316 aa29.33■■■□□ 2.29
ITGA4-204ENST00000465522 MST1RQ04912 1400 aa29.32■■■□□ 2.28
ITGA4-204ENST00000465522 TNNT2P45379 298 aaPredicted RBP29.31■■■□□ 2.28
ITGA4-204ENST00000465522 NME9Q86XW9 330 aa29.31■■■□□ 2.28
ITGA4-204ENST00000465522 ANKRD26Q9UPS8 1709 aa29.29■■■□□ 2.28
ITGA4-204ENST00000465522 PSME1Q06323 249 aa29.28■■■□□ 2.28
ITGA4-204ENST00000465522 SSH2Q76I76 1423 aa29.28■■■□□ 2.28
ITGA4-204ENST00000465522 NRKQ7Z2Y5 1582 aa29.28■■■□□ 2.28
ITGA4-204ENST00000465522 TTC21AQ8NDW8 1320 aa29.27■■■□□ 2.28
ITGA4-204ENST00000465522 FOXO3O43524 673 aa29.26■■■□□ 2.27
ITGA4-204ENST00000465522 YTHDC1Q96MU7 727 aaKnown RBP29.26■■■□□ 2.27
ITGA4-204ENST00000465522 COG3Q96JB2 828 aa29.25■■■□□ 2.27
ITGA4-204ENST00000465522 ZRANB1Q9UGI0 708 aa29.24■■■□□ 2.27
ITGA4-204ENST00000465522 LTBP4Q8N2S1 1624 aa29.23■■■□□ 2.27
ITGA4-204ENST00000465522 KIF1AQ12756 1690 aa29.23■■■□□ 2.27
ITGA4-204ENST00000465522 PAK3O75914 559 aaPredicted RBP29.23■■■□□ 2.27
ITGA4-204ENST00000465522 FAM9BQ8IZU0 186 aa29.23■■■□□ 2.27
ITGA4-204ENST00000465522 SLAIN2Q9P270 581 aa29.23■■■□□ 2.27
ITGA4-204ENST00000465522 PNISRQ8TF01 805 aaKnown RBP29.2■■■□□ 2.26
ITGA4-204ENST00000465522 SCAF1Q9H7N4 1312 aaKnown RBP29.17■■■□□ 2.26
ITGA4-204ENST00000465522 MTHFSP49914 203 aa29.17■■■□□ 2.26
ITGA4-204ENST00000465522 KRT28Q7Z3Y7 464 aa29.17■■■□□ 2.26
ITGA4-204ENST00000465522 ABTB2Q8N961 1025 aa29.17■■■□□ 2.26
ITGA4-204ENST00000465522 XPCQ01831 940 aaPredicted RBP29.16■■■□□ 2.26
ITGA4-204ENST00000465522 NLRP6P59044 892 aa29.14■■■□□ 2.26
ITGA4-204ENST00000465522 BRINP3Q76B58 766 aa29.14■■■□□ 2.25
ITGA4-204ENST00000465522 OVOS2A0A0J9YW53 1432 aa29.13■■■□□ 2.25
ITGA4-204ENST00000465522 OVOS2Q6IE36 1432 aa29.13■■■□□ 2.25
ITGA4-204ENST00000465522 USP31Q70CQ4 1352 aa29.13■■■□□ 2.25
ITGA4-204ENST00000465522 NPHP3Q7Z494 1330 aa29.13■■■□□ 2.25
ITGA4-204ENST00000465522 PIK3C2AO00443 1686 aa29.12■■■□□ 2.25
ITGA4-204ENST00000465522 FBLN1P23142 703 aa29.11■■■□□ 2.25
ITGA4-204ENST00000465522 MAP2P11137 1827 aaKnown RBP29.11■■■□□ 2.25
ITGA4-204ENST00000465522 NUTM2GQ5VZR2 741 aa29.11■■■□□ 2.25
ITGA4-204ENST00000465522 CFAP53Q96M91 514 aa29.11■■■□□ 2.25
ITGA4-204ENST00000465522 DDX17Q92841 729 aaKnown RBP29.1■■■□□ 2.25
ITGA4-204ENST00000465522 AATKQ6ZMQ8 1374 aa29.09■■■□□ 2.25
ITGA4-204ENST00000465522 POLKQ9UBT6 870 aa29.08■■■□□ 2.25
ITGA4-204ENST00000465522 WDR43Q15061 677 aaKnown RBP eCLIP29.06■■■□□ 2.24
ITGA4-204ENST00000465522 LMOD2Q6P5Q4 547 aa29.06■■■□□ 2.24
ITGA4-204ENST00000465522 PPM1GO15355 546 aaPredicted RBP29.05■■■□□ 2.24
ITGA4-204ENST00000465522 TRPM3Q9HCF6 1732 aaPredicted RBP29.05■■■□□ 2.24
ITGA4-204ENST00000465522 SOX12O15370 315 aa29.04■■■□□ 2.24
ITGA4-204ENST00000465522 RRS1Q15050 365 aaKnown RBP29.03■■■□□ 2.24
ITGA4-204ENST00000465522 EMILIN1Q9Y6C2 1016 aa29.03■■■□□ 2.24
ITGA4-204ENST00000465522 USP54Q70EL1 1684 aa29.02■■■□□ 2.24
ITGA4-204ENST00000465522 SBNO1A3KN83 1393 aa29.01■■■□□ 2.23
ITGA4-204ENST00000465522 ADAMTS8Q9UP79 889 aa29■■■□□ 2.23
ITGA4-204ENST00000465522 PXDNQ92626 1479 aa28.99■■■□□ 2.23
ITGA4-204ENST00000465522 MARF1Q9Y4F3 1742 aaKnown RBP28.99■■■□□ 2.23
ITGA4-204ENST00000465522 HNRNPUQ00839 825 aaKnown RBP eCLIP28.99■■■□□ 2.23
ITGA4-204ENST00000465522 PNPLA6Q8IY17 1366 aa28.98■■■□□ 2.23
ITGA4-204ENST00000465522 SMG6Q86US8 1419 aaKnown RBP28.97■■■□□ 2.23
ITGA4-204ENST00000465522 KCNH5Q8NCM2 988 aa28.96■■■□□ 2.23
ITGA4-204ENST00000465522 ALS2Q96Q42 1657 aa28.96■■■□□ 2.23
ITGA4-204ENST00000465522 INSRP06213 1382 aa28.96■■■□□ 2.23
ITGA4-204ENST00000465522 SOS2Q07890 1332 aaPredicted RBP28.95■■■□□ 2.23
ITGA4-204ENST00000465522 TOM1O60784 492 aa28.95■■■□□ 2.23
ITGA4-204ENST00000465522 NUDCQ9Y266 331 aa28.95■■■□□ 2.23
ITGA4-204ENST00000465522 SPATA31A3Q5VYP0 1347 aa28.95■■■□□ 2.22
ITGA4-204ENST00000465522 DIAPH1O60610 1272 aaKnown RBP28.94■■■□□ 2.22
ITGA4-204ENST00000465522 TNS3Q68CZ2 1445 aa28.94■■■□□ 2.22
ITGA4-204ENST00000465522 MAP3K19Q56UN5 1328 aa28.93■■■□□ 2.22
ITGA4-204ENST00000465522 PLEKHG5O94827 1062 aa28.93■■■□□ 2.22
ITGA4-204ENST00000465522 CDK12Q9NYV4 1490 aaPredicted RBP28.92■■■□□ 2.22
ITGA4-204ENST00000465522 SHPRHQ149N8 1683 aa28.92■■■□□ 2.22
ITGA4-204ENST00000465522 COL3A1P02461 1466 aaPredicted RBP28.92■■■□□ 2.22
ITGA4-204ENST00000465522 GCP02774 474 aa28.91■■■□□ 2.22
ITGA4-204ENST00000465522 ROBO1Q9Y6N7 1651 aa28.91■■■□□ 2.22
ITGA4-204ENST00000465522 NHSL1Q5SYE7 1610 aa28.9■■■□□ 2.22
ITGA4-204ENST00000465522 ARHGEF10O15013 1369 aa28.9■■■□□ 2.22
ITGA4-204ENST00000465522 AMPHP49418 695 aa28.9■■■□□ 2.22
ITGA4-204ENST00000465522 USP19O94966 1318 aa28.9■■■□□ 2.22
ITGA4-204ENST00000465522 CENPBP07199 599 aaPredicted RBP28.89■■■□□ 2.22
ITGA4-204ENST00000465522 U2SURPO15042 1029 aaKnown RBP28.89■■■□□ 2.21
ITGA4-204ENST00000465522 U2AF1L5P0DN76 240 aaPredicted RBP28.88■■■□□ 2.21
ITGA4-204ENST00000465522 U2AF1Q01081 240 aaKnown RBP eCLIP28.88■■■□□ 2.21
ITGA4-204ENST00000465522 SLIT3O75094 1523 aa28.87■■■□□ 2.21
ITGA4-204ENST00000465522 UBAP1LF5GYI3 381 aa28.86■■■□□ 2.21
ITGA4-204ENST00000465522 HSP90AB2PQ58FF8 381 aa28.86■■■□□ 2.21
ITGA4-204ENST00000465522 FLT4P35916 1363 aa28.85■■■□□ 2.21
ITGA4-204ENST00000465522 BLMP54132 1417 aaPredicted RBP28.85■■■□□ 2.21
ITGA4-204ENST00000465522 IQSEC2Q5JU85 1478 aa28.85■■■□□ 2.21
ITGA4-204ENST00000465522 NFAT5O94916 1531 aa28.85■■■□□ 2.21
ITGA4-204ENST00000465522 PEAK1Q9H792 1746 aa28.85■■■□□ 2.21
ITGA4-204ENST00000465522 CERKQ8TCT0 537 aa28.85■■■□□ 2.21
ITGA4-204ENST00000465522 KIF24Q5T7B8 1368 aa28.85■■■□□ 2.21
ITGA4-204ENST00000465522 IL13P35225 146 aa28.84■■■□□ 2.21
ITGA4-204ENST00000465522 PIP4K2BP78356 416 aa28.84■■■□□ 2.21
ITGA4-204ENST00000465522 LTN1O94822 1766 aa28.82■■■□□ 2.2
ITGA4-204ENST00000465522 MED1Q15648 1581 aaPredicted RBP28.82■■■□□ 2.2
ITGA4-204ENST00000465522 CABLES1Q8TDN4 633 aa28.82■■■□□ 2.2
ITGA4-204ENST00000465522 SENP3-EIF4A1A0A087X0R7 540 aa28.81■■■□□ 2.2
ITGA4-204ENST00000465522 ZBTB7CA1YPR0 619 aa28.81■■■□□ 2.2
ITGA4-204ENST00000465522 HOXC9P31274 260 aa28.81■■■□□ 2.2
ITGA4-204ENST00000465522 CCDC146Q8IYE0 955 aa28.81■■■□□ 2.2
ITGA4-204ENST00000465522 LRRC59Q96AG4 307 aaKnown RBP28.8■■■□□ 2.2
ITGA4-204ENST00000465522 EIF4A2Q14240 407 aaKnown RBP28.8■■■□□ 2.2
ITGA4-204ENST00000465522 ARHGEF25Q86VW2 580 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms