RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PLEKHG3A1L390 1219 aa26.39■■□□□ 1.82
USP39-209ENST00000458268 RXRBP28702 533 aa26.39■■□□□ 1.82
USP39-209ENST00000458268 ST20-MTHFSA0A0A6YYL1 179 aa26.35■■□□□ 1.81
USP39-209ENST00000458268 PLCH1Q4KWH8 1693 aa26.34■■□□□ 1.81
USP39-209ENST00000458268 ABTB2Q8N961 1025 aa26.33■■□□□ 1.81
USP39-209ENST00000458268 TMC1Q8TDI8 760 aa26.33■■□□□ 1.81
USP39-209ENST00000458268 ATAD2Q6PL18 1390 aa26.33■■□□□ 1.8
USP39-209ENST00000458268 USP47Q96K76 1375 aa26.33■■□□□ 1.8
USP39-209ENST00000458268 CRYBG1Q9Y4K1 1723 aa26.32■■□□□ 1.8
USP39-209ENST00000458268 FNBP4Q8N3X1 1017 aaPredicted RBP26.32■■□□□ 1.8
USP39-209ENST00000458268 TIMELESSQ9UNS1 1208 aa26.32■■□□□ 1.8
USP39-209ENST00000458268 PHRF1Q9P1Y6 1649 aaKnown RBP26.32■■□□□ 1.8
USP39-209ENST00000458268 SBNO2Q9Y2G9 1366 aa26.32■■□□□ 1.8
USP39-209ENST00000458268 TRPC5Q9UL62 973 aaPredicted RBP26.31■■□□□ 1.8
USP39-209ENST00000458268 RBM6P78332 1123 aaKnown RBP26.3■■□□□ 1.8
USP39-209ENST00000458268 AKAP12Q02952 1782 aa26.3■■□□□ 1.8
USP39-209ENST00000458268 USP6P35125 1406 aa26.29■■□□□ 1.8
USP39-209ENST00000458268 CCDC9Q9Y3X0 531 aaKnown RBP26.28■■□□□ 1.8
USP39-209ENST00000458268 BCL9LQ86UU0 1499 aa26.28■■□□□ 1.8
USP39-209ENST00000458268 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.26■■□□□ 1.79
USP39-209ENST00000458268 ATRNO75882 1429 aa26.26■■□□□ 1.79
USP39-209ENST00000458268 ZBTB7CA1YPR0 619 aa26.26■■□□□ 1.79
USP39-209ENST00000458268 ZC3H6P61129 1189 aaKnown RBP26.26■■□□□ 1.79
USP39-209ENST00000458268 PRDM11Q9NQV5 511 aa26.26■■□□□ 1.79
USP39-209ENST00000458268 SLIT2O94813 1529 aa26.25■■□□□ 1.79
USP39-209ENST00000458268 FAM83GA6ND36 823 aa26.25■■□□□ 1.79
USP39-209ENST00000458268 UNC5CLQ8IV45 518 aa26.25■■□□□ 1.79
USP39-209ENST00000458268 RGS12O14924 1447 aa26.24■■□□□ 1.79
USP39-209ENST00000458268 KTN1Q86UP2 1357 aaKnown RBP26.24■■□□□ 1.79
USP39-209ENST00000458268 COL14A1Q05707 1796 aaKnown RBP26.24■■□□□ 1.79
USP39-209ENST00000458268 NWD2Q9ULI1 1742 aa26.24■■□□□ 1.79
USP39-209ENST00000458268 CHRNA2Q15822 529 aa26.23■■□□□ 1.79
USP39-209ENST00000458268 TESK2Q96S53 571 aa26.23■■□□□ 1.79
USP39-209ENST00000458268 NLRP6P59044 892 aa26.22■■□□□ 1.79
USP39-209ENST00000458268 NLRP13Q86W25 1043 aa26.22■■□□□ 1.79
USP39-209ENST00000458268 BTG4Q9NY30 223 aa26.22■■□□□ 1.79
USP39-209ENST00000458268 KIAA0232Q92628 1395 aa26.21■■□□□ 1.79
USP39-209ENST00000458268 NRKQ7Z2Y5 1582 aa26.21■■□□□ 1.79
USP39-209ENST00000458268 MON2Q7Z3U7 1717 aa26.21■■□□□ 1.79
USP39-209ENST00000458268 PIK3C2AO00443 1686 aa26.21■■□□□ 1.79
USP39-209ENST00000458268 SOX12O15370 315 aa26.2■■□□□ 1.78
USP39-209ENST00000458268 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.2■■□□□ 1.78
USP39-209ENST00000458268 ZNF692Q9BU19 519 aaPredicted RBP26.2■■□□□ 1.78
USP39-209ENST00000458268 SLC12A5Q9H2X9 1139 aa26.2■■□□□ 1.78
USP39-209ENST00000458268 HDGFL2Q7Z4V5 671 aaPredicted RBP26.19■■□□□ 1.78
USP39-209ENST00000458268 BRD4O60885 1362 aaPredicted RBP26.19■■□□□ 1.78
USP39-209ENST00000458268 TTC21BQ7Z4L5 1316 aa26.18■■□□□ 1.78
USP39-209ENST00000458268 CDK12Q9NYV4 1490 aaPredicted RBP26.18■■□□□ 1.78
USP39-209ENST00000458268 TMF1P82094 1093 aa26.18■■□□□ 1.78
USP39-209ENST00000458268 NRAPQ86VF7 1730 aa26.18■■□□□ 1.78
USP39-209ENST00000458268 GJD4Q96KN9 370 aaPredicted RBP26.18■■□□□ 1.78
USP39-209ENST00000458268 CPSF1Q10570 1443 aaKnown RBP26.16■■□□□ 1.78
USP39-209ENST00000458268 A0A0G2JS52 829 aa26.16■■□□□ 1.78
USP39-209ENST00000458268 MYT1Q01538 1121 aa26.16■■□□□ 1.78
USP39-209ENST00000458268 STRN4Q9NRL3 753 aa26.16■■□□□ 1.78
USP39-209ENST00000458268 GLI3P10071 1580 aa26.16■■□□□ 1.78
USP39-209ENST00000458268 POLR3GLQ9BT43 218 aa26.15■■□□□ 1.78
USP39-209ENST00000458268 USP19O94966 1318 aa26.14■■□□□ 1.78
USP39-209ENST00000458268 TERF2IPQ9NYB0 399 aa26.14■■□□□ 1.78
USP39-209ENST00000458268 SSH2Q76I76 1423 aa26.14■■□□□ 1.77
USP39-209ENST00000458268 CD163L1Q9NR16 1453 aa26.13■■□□□ 1.77
USP39-209ENST00000458268 SLC24A1O60721 1099 aa26.13■■□□□ 1.77
USP39-209ENST00000458268 GCP02774 474 aa26.13■■□□□ 1.77
USP39-209ENST00000458268 VPS72Q15906 364 aa26.13■■□□□ 1.77
USP39-209ENST00000458268 A0A1W2PP64 1363 aa26.12■■□□□ 1.77
USP39-209ENST00000458268 TTC21AQ8NDW8 1320 aa26.12■■□□□ 1.77
USP39-209ENST00000458268 ZRANB1Q9UGI0 708 aa26.1■■□□□ 1.77
USP39-209ENST00000458268 EVA1CP58658 441 aa26.09■■□□□ 1.77
USP39-209ENST00000458268 NME9Q86XW9 330 aa26.09■■□□□ 1.77
USP39-209ENST00000458268 SLIT3O75094 1523 aa26.09■■□□□ 1.77
USP39-209ENST00000458268 PUS7Q96PZ0 661 aaKnown RBP26.08■■□□□ 1.77
USP39-209ENST00000458268 EIF4G2P78344 907 aaKnown RBP eCLIP26.07■■□□□ 1.76
USP39-209ENST00000458268 HSPA5P11021 654 aaKnown RBP26.06■■□□□ 1.76
USP39-209ENST00000458268 CDCA8Q53HL2 280 aa26.06■■□□□ 1.76
USP39-209ENST00000458268 USP35Q9P2H5 1018 aa26.06■■□□□ 1.76
USP39-209ENST00000458268 BRWD3Q6RI45 1802 aa26.06■■□□□ 1.76
USP39-209ENST00000458268 NINLQ9Y2I6 1382 aa26.06■■□□□ 1.76
USP39-209ENST00000458268 EDC4Q6P2E9 1401 aaKnown RBP26.05■■□□□ 1.76
USP39-209ENST00000458268 FAM98CQ17RN3 349 aaKnown RBP26.05■■□□□ 1.76
USP39-209ENST00000458268 CPDO75976 1380 aa26.04■■□□□ 1.76
USP39-209ENST00000458268 CAMTA1Q9Y6Y1 1673 aa26.03■■□□□ 1.76
USP39-209ENST00000458268 SEPT12Q8IYM1 358 aa26.03■■□□□ 1.76
USP39-209ENST00000458268 LMO7Q8WWI1 1683 aa26.03■■□□□ 1.76
USP39-209ENST00000458268 MYOM1P52179 1685 aa26.01■■□□□ 1.75
USP39-209ENST00000458268 KCNH5Q8NCM2 988 aa26.01■■□□□ 1.75
USP39-209ENST00000458268 UPF1Q92900 1129 aaKnown RBP eCLIP26.01■■□□□ 1.75
USP39-209ENST00000458268 RGPD5Q99666 1765 aa26■■□□□ 1.75
USP39-209ENST00000458268 ANKRD36BQ8N2N9 1353 aa26■■□□□ 1.75
USP39-209ENST00000458268 SPATA31A5Q5VU36 1347 aa26■■□□□ 1.75
USP39-209ENST00000458268 SPATA31A7Q8IWB4 1347 aa26■■□□□ 1.75
USP39-209ENST00000458268 LARP1Q6PKG0 1096 aaKnown RBP25.98■■□□□ 1.75
USP39-209ENST00000458268 LTN1O94822 1766 aa25.97■■□□□ 1.75
USP39-209ENST00000458268 NFAT5O94916 1531 aa25.96■■□□□ 1.75
USP39-209ENST00000458268 USP54Q70EL1 1684 aa25.96■■□□□ 1.75
USP39-209ENST00000458268 USP31Q70CQ4 1352 aa25.95■■□□□ 1.75
USP39-209ENST00000458268 SPATA31A1Q5TZJ5 1347 aa25.95■■□□□ 1.75
USP39-209ENST00000458268 COL5A2P05997 1499 aaPredicted RBP25.95■■□□□ 1.74
USP39-209ENST00000458268 COL18A1P39060 1754 aa25.95■■□□□ 1.74
USP39-209ENST00000458268 AATKQ6ZMQ8 1374 aa25.95■■□□□ 1.74
USP39-209ENST00000458268 CSB-PGBD3P0DP91 1061 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms