RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 NUP155O75694 1391 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 GORABQ5T7V8 394 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 PDE4AP27815 886 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 CNGA1P29973 690 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 CCDC91Q7Z6B0 441 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 SWAP70Q9UH65 585 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 PAXBP1Q9Y5B6 917 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 PRPF40AO75400 957 aaKnown RBP6.18□□□□□ -1.42
CSMD3-204ENST00000455883 EPS15P42566 896 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 C10orf67Q8IYJ2 551 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 RP1P56715 2156 aa6.18□□□□□ -1.42
CSMD3-204ENST00000455883 SLC3A2P08195 630 aaKnown RBP6.18□□□□□ -1.42
CSMD3-204ENST00000455883 FHOD3Q2V2M9 1422 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 SH2D4BQ5SQS7 431 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 DNAJC21Q5F1R6 531 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 CETN2P41208 172 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 VPS36Q86VN1 386 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 PHAXQ9H814 394 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 ERICH2A1L162 156 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 C14orf37Q86TY3 774 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 IFT57Q9NWB7 429 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 FGFR1OPO95684 399 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 EFCAB2Q5VUJ9 269 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 ZSCAN30Q86W11 494 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 TAOK3Q9H2K8 898 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 SHTN1A0MZ66 631 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 DNAJC2Q99543 621 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 SMG6Q86US8 1419 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 TRIM6-TRIM34B2RNG4 842 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 VSIG10Q8N0Z9 540 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 STMN4Q9H169 189 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 GNAI1P63096 354 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 CGNQ9P2M7 1197 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 DHX57Q6P158 1386 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 CDC45O75419 566 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 RBM25P49756 843 aaKnown RBP6.17□□□□□ -1.42
CSMD3-204ENST00000455883 DCAF11Q8TEB1 546 aa6.17□□□□□ -1.42
CSMD3-204ENST00000455883 SMTNL1A8MU46 457 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 ANKRD18BA2A2Z9 1011 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 WASF1Q92558 559 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 PLVAPQ9BX97 442 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 RBM28Q9NW13 759 aaKnown RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 ABCC11Q96J66 1382 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CFAP43Q8NDM7 1665 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 NAA15Q9BXJ9 866 aaKnown RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 HSPA5P11021 654 aaKnown RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CLUL1Q15846 466 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 SPECC1LQ69YQ0 1117 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CCDC171Q6TFL3 1326 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 GOLIM4O00461 696 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 KIF18AQ8NI77 898 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 RRP7BPQ9NSQ0 103 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CAMSAP2Q08AD1 1489 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CCDC88CQ9P219 2028 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 NSD2O96028 1365 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 VGFO15240 615 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 OFD1O75665 1012 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 STAMBPO95630 424 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 FILIP1Q7Z7B0 1213 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 TSHZ2Q9NRE2 1034 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 KIF20AO95235 890 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 GIGYF2Q6Y7W6 1299 aaKnown RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 SCAND2PQ9GZW5 306 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 NDC80O14777 642 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 U2AF1L5P0DN76 240 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 U2AF1Q01081 240 aaKnown RBP eCLIP6.16□□□□□ -1.42
CSMD3-204ENST00000455883 FAM114A1Q8IWE2 563 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CEP57L1Q8IYX8 460 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 INSRP06213 1382 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 FGD6Q6ZV73 1430 aa6.16□□□□□ -1.42
CSMD3-204ENST00000455883 CHIC2Q9UKJ5 165 aa6.15□□□□□ -1.42
CSMD3-204ENST00000455883 PPP1R12BO60237 982 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-204ENST00000455883 TUBB2AQ13885 445 aa6.15□□□□□ -1.42
CSMD3-204ENST00000455883 TUBB2BQ9BVA1 445 aa6.15□□□□□ -1.42
CSMD3-204ENST00000455883 CASTP20810 708 aaKnown RBP6.15□□□□□ -1.42
CSMD3-204ENST00000455883 URB1O60287 2271 aaKnown RBP6.15□□□□□ -1.42
CSMD3-204ENST00000455883 CROCCP2Q86T23 111 aa6.15□□□□□ -1.42
CSMD3-204ENST00000455883 WDR97A6NE52 1622 aa6.15□□□□□ -1.42
CSMD3-204ENST00000455883 AIMP1Q12904 312 aaKnown RBP6.15□□□□□ -1.42
CSMD3-204ENST00000455883 RALYLQ86SE5 291 aaKnown RBP6.15□□□□□ -1.42
CSMD3-204ENST00000455883 TTC14Q96N46 770 aa6.15□□□□□ -1.42
CSMD3-204ENST00000455883 TTC12Q9H892 705 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-204ENST00000455883 ANKS4BQ8N8V4 417 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 ZSCAN31Q96LW9 406 aaPredicted RBP6.15□□□□□ -1.43
CSMD3-204ENST00000455883 SMC3Q9UQE7 1217 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 GNAI3P08754 354 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 KIF14Q15058 1648 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC50Q8IVM0 306 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 NCOA2Q15596 1464 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 RALGAPBQ86X10 1494 aa6.15□□□□□ -1.43
CSMD3-204ENST00000455883 GCOM1H8Y6P7 765 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 MYZAPP0CAP1 466 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 GIMAP7Q8NHV1 300 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 SREK1Q8WXA9 508 aaKnown RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 PRKRIP1Q9H875 184 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 SPAG17Q6Q759 2223 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC102AQ96A19 550 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 MPHOSPH9Q99550 1183 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 LRRCC1Q9C099 1032 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms