RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 LMOD2Q6P5Q4 547 aa17.28■□□□□ 0.36
USP40-210ENST00000454354 UNC5CLQ8IV45 518 aa17.28■□□□□ 0.36
USP40-210ENST00000454354 RALGAPBQ86X10 1494 aa17.28■□□□□ 0.36
USP40-210ENST00000454354 BRWD3Q6RI45 1802 aa17.28■□□□□ 0.36
USP40-210ENST00000454354 EP400Q96L91 3159 aa17.28■□□□□ 0.36
USP40-210ENST00000454354 AKAP12Q02952 1782 aa17.28■□□□□ 0.36
USP40-210ENST00000454354 HAP1P54257 671 aaPredicted RBP17.27■□□□□ 0.36
USP40-210ENST00000454354 PPIP5K1Q6PFW1 1433 aa17.27■□□□□ 0.35
USP40-210ENST00000454354 ACEP12821 1306 aa17.26■□□□□ 0.35
USP40-210ENST00000454354 NBPF8Q3BBV2 869 aa17.26■□□□□ 0.35
USP40-210ENST00000454354 UPF1Q92900 1129 aaKnown RBP eCLIP17.26■□□□□ 0.35
USP40-210ENST00000454354 TONSLQ96HA7 1378 aa17.26■□□□□ 0.35
USP40-210ENST00000454354 NRKQ7Z2Y5 1582 aa17.25■□□□□ 0.35
USP40-210ENST00000454354 SRPK2P78362 688 aaKnown RBP17.24■□□□□ 0.35
USP40-210ENST00000454354 GJD4Q96KN9 370 aaPredicted RBP17.24■□□□□ 0.35
USP40-210ENST00000454354 SBNO2Q9Y2G9 1366 aa17.24■□□□□ 0.35
USP40-210ENST00000454354 PAK3O75914 559 aaPredicted RBP17.23■□□□□ 0.35
USP40-210ENST00000454354 BRD4O60885 1362 aaPredicted RBP17.23■□□□□ 0.35
USP40-210ENST00000454354 CABP2Q9NPB3 220 aa17.22■□□□□ 0.35
USP40-210ENST00000454354 EVC2Q86UK5 1308 aa17.21■□□□□ 0.35
USP40-210ENST00000454354 ATAD2Q6PL18 1390 aa17.21■□□□□ 0.35
USP40-210ENST00000454354 FAM83GA6ND36 823 aa17.21■□□□□ 0.35
USP40-210ENST00000454354 PLEKHG5O94827 1062 aa17.21■□□□□ 0.35
USP40-210ENST00000454354 VPS72Q15906 364 aa17.21■□□□□ 0.35
USP40-210ENST00000454354 MON2Q7Z3U7 1717 aa17.21■□□□□ 0.35
USP40-210ENST00000454354 PIK3C2AO00443 1686 aa17.2■□□□□ 0.34
USP40-210ENST00000454354 USP6P35125 1406 aa17.2■□□□□ 0.34
USP40-210ENST00000454354 LMO7Q8WWI1 1683 aa17.19■□□□□ 0.34
USP40-210ENST00000454354 USP19O94966 1318 aa17.18■□□□□ 0.34
USP40-210ENST00000454354 SSH2Q76I76 1423 aa17.17■□□□□ 0.34
USP40-210ENST00000454354 THSD7AQ9UPZ6 1657 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 SLIT3O75094 1523 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 KIAA0232Q92628 1395 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 CARD11Q9BXL7 1154 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 BTG4Q9NY30 223 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 CABP1Q9NZU7 370 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 USP54Q70EL1 1684 aa17.16■□□□□ 0.34
USP40-210ENST00000454354 ONECUT3O60422 494 aaPredicted RBP17.15■□□□□ 0.34
USP40-210ENST00000454354 PRDM11Q9NQV5 511 aa17.15■□□□□ 0.34
USP40-210ENST00000454354 CPDO75976 1380 aa17.15■□□□□ 0.34
USP40-210ENST00000454354 ABTB2Q8N961 1025 aa17.14■□□□□ 0.33
USP40-210ENST00000454354 NUTM2GQ5VZR2 741 aa17.13■□□□□ 0.33
USP40-210ENST00000454354 CPSF1Q10570 1443 aaKnown RBP17.13■□□□□ 0.33
USP40-210ENST00000454354 COL18A1P39060 1754 aa17.12■□□□□ 0.33
USP40-210ENST00000454354 CAMTA1Q9Y6Y1 1673 aa17.11■□□□□ 0.33
USP40-210ENST00000454354 NLRP13Q86W25 1043 aa17.11■□□□□ 0.33
USP40-210ENST00000454354 SPATA31A5Q5VU36 1347 aa17.11■□□□□ 0.33
USP40-210ENST00000454354 SPATA31A7Q8IWB4 1347 aa17.11■□□□□ 0.33
USP40-210ENST00000454354 SEPT12Q8IYM1 358 aa17.1■□□□□ 0.33
USP40-210ENST00000454354 CCDC9Q9Y3X0 531 aaKnown RBP17.1■□□□□ 0.33
USP40-210ENST00000454354 CD163L1Q9NR16 1453 aa17.1■□□□□ 0.33
USP40-210ENST00000454354 ZNF692Q9BU19 519 aaPredicted RBP17.09■□□□□ 0.33
USP40-210ENST00000454354 CLSPNQ9HAW4 1339 aa17.09■□□□□ 0.33
USP40-210ENST00000454354 WNK3Q9BYP7 1800 aa17.08■□□□□ 0.33
USP40-210ENST00000454354 RGPD5Q99666 1765 aa17.08■□□□□ 0.33
USP40-210ENST00000454354 GCP02774 474 aa17.08■□□□□ 0.32
USP40-210ENST00000454354 ZC3H6P61129 1189 aaKnown RBP17.08■□□□□ 0.32
USP40-210ENST00000454354 CHRNA2Q15822 529 aa17.08■□□□□ 0.32
USP40-210ENST00000454354 TTC21BQ7Z4L5 1316 aa17.07■□□□□ 0.32
USP40-210ENST00000454354 TTC21AQ8NDW8 1320 aa17.07■□□□□ 0.32
USP40-210ENST00000454354 CCDC125Q86Z20 511 aa17.07■□□□□ 0.32
USP40-210ENST00000454354 RGPD1P0DJD0 1748 aa17.07■□□□□ 0.32
USP40-210ENST00000454354 NFAT5O94916 1531 aa17.06■□□□□ 0.32
USP40-210ENST00000454354 KTN1Q86UP2 1357 aaKnown RBP17.06■□□□□ 0.32
USP40-210ENST00000454354 SPATA31A1Q5TZJ5 1347 aa17.06■□□□□ 0.32
USP40-210ENST00000454354 PUS7Q96PZ0 661 aaKnown RBP17.06■□□□□ 0.32
USP40-210ENST00000454354 PARP4Q9UKK3 1724 aaKnown RBP17.06■□□□□ 0.32
USP40-210ENST00000454354 COL5A2P05997 1499 aaPredicted RBP17.05■□□□□ 0.32
USP40-210ENST00000454354 BLMP54132 1417 aaPredicted RBP17.05■□□□□ 0.32
USP40-210ENST00000454354 NLRP6P59044 892 aa17.05■□□□□ 0.32
USP40-210ENST00000454354 FAM98CQ17RN3 349 aaKnown RBP17.05■□□□□ 0.32
USP40-210ENST00000454354 ABCC6O95255 1503 aa17.05■□□□□ 0.32
USP40-210ENST00000454354 LTN1O94822 1766 aa17.05■□□□□ 0.32
USP40-210ENST00000454354 KRT27Q7Z3Y8 459 aa17.04■□□□□ 0.32
USP40-210ENST00000454354 TESK2Q96S53 571 aa17.04■□□□□ 0.32
USP40-210ENST00000454354 TIMELESSQ9UNS1 1208 aa17.04■□□□□ 0.32
USP40-210ENST00000454354 TNS1Q9HBL0 1735 aaKnown RBP17.04■□□□□ 0.32
USP40-210ENST00000454354 AATKQ6ZMQ8 1374 aa17.03■□□□□ 0.32
USP40-210ENST00000454354 NINLQ9Y2I6 1382 aa17.02■□□□□ 0.32
USP40-210ENST00000454354 ST20-MTHFSA0A0A6YYL1 179 aa17.02■□□□□ 0.32
USP40-210ENST00000454354 STRN4Q9NRL3 753 aa17.02■□□□□ 0.32
USP40-210ENST00000454354 USP31Q70CQ4 1352 aa17.02■□□□□ 0.31
USP40-210ENST00000454354 SLC24A1O60721 1099 aa17.01■□□□□ 0.31
USP40-210ENST00000454354 EDC4Q6P2E9 1401 aaKnown RBP17.01■□□□□ 0.31
USP40-210ENST00000454354 USP47Q96K76 1375 aa17.01■□□□□ 0.31
USP40-210ENST00000454354 A0A0G2JS52 829 aa17■□□□□ 0.31
USP40-210ENST00000454354 MYT1Q01538 1121 aa17■□□□□ 0.31
USP40-210ENST00000454354 A0A1W2PP64 1363 aa17■□□□□ 0.31
USP40-210ENST00000454354 CRB1P82279 1406 aa16.99■□□□□ 0.31
USP40-210ENST00000454354 LARP1Q6PKG0 1096 aaKnown RBP16.99■□□□□ 0.31
USP40-210ENST00000454354 BARGINQ6ZT62 677 aa16.99■□□□□ 0.31
USP40-210ENST00000454354 KCNH5Q8NCM2 988 aa16.99■□□□□ 0.31
USP40-210ENST00000454354 MYOM1P52179 1685 aa16.98■□□□□ 0.31
USP40-210ENST00000454354 EVA1CP58658 441 aa16.98■□□□□ 0.31
USP40-210ENST00000454354 SLC12A5Q9H2X9 1139 aa16.98■□□□□ 0.31
USP40-210ENST00000454354 LRRC37A3O60309 1634 aa16.98■□□□□ 0.31
USP40-210ENST00000454354 HDGFL2Q7Z4V5 671 aaPredicted RBP16.97■□□□□ 0.31
USP40-210ENST00000454354 TMC1Q8TDI8 760 aa16.97■□□□□ 0.31
USP40-210ENST00000454354 PCGF6Q9BYE7 350 aa16.97■□□□□ 0.31
USP40-210ENST00000454354 THRAP3Q9Y2W1 955 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms