RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CCDC61Q9Y6R9 512 aa19.28■□□□□ 0.68
HMGB3-204ENST00000448905 PLCH1Q4KWH8 1693 aa19.27■□□□□ 0.67
HMGB3-204ENST00000448905 EVA1CP58658 441 aa19.26■□□□□ 0.67
HMGB3-204ENST00000448905 SPATA31A5Q5VU36 1347 aa19.25■□□□□ 0.67
HMGB3-204ENST00000448905 SPATA31A7Q8IWB4 1347 aa19.25■□□□□ 0.67
HMGB3-204ENST00000448905 ADGRB1O14514 1584 aa19.25■□□□□ 0.67
HMGB3-204ENST00000448905 NBPF8Q3BBV2 869 aa19.25■□□□□ 0.67
HMGB3-204ENST00000448905 ABCA3Q99758 1704 aa19.23■□□□□ 0.67
HMGB3-204ENST00000448905 TULP4Q9NRJ4 1543 aa19.22■□□□□ 0.67
HMGB3-204ENST00000448905 PLEKHG3A1L390 1219 aa19.22■□□□□ 0.67
HMGB3-204ENST00000448905 ZC3H6P61129 1189 aaKnown RBP19.22■□□□□ 0.67
HMGB3-204ENST00000448905 FAM182BQ5T319 152 aa19.22■□□□□ 0.67
HMGB3-204ENST00000448905 ABTB2Q8N961 1025 aa19.22■□□□□ 0.67
HMGB3-204ENST00000448905 STRN4Q9NRL3 753 aa19.22■□□□□ 0.67
HMGB3-204ENST00000448905 ACEP12821 1306 aa19.22■□□□□ 0.67
HMGB3-204ENST00000448905 NWD2Q9ULI1 1742 aa19.21■□□□□ 0.67
HMGB3-204ENST00000448905 PSDA5PKW4 1024 aaPredicted RBP19.2■□□□□ 0.66
HMGB3-204ENST00000448905 SRPK2P78362 688 aaKnown RBP19.2■□□□□ 0.66
HMGB3-204ENST00000448905 CHRNA2Q15822 529 aa19.2■□□□□ 0.66
HMGB3-204ENST00000448905 NUTM2GQ5VZR2 741 aa19.2■□□□□ 0.66
HMGB3-204ENST00000448905 ADGRB2O60241 1585 aa19.19■□□□□ 0.66
HMGB3-204ENST00000448905 FAM196AQ6ZSG2 479 aa19.19■□□□□ 0.66
HMGB3-204ENST00000448905 NLRP13Q86W25 1043 aa19.19■□□□□ 0.66
HMGB3-204ENST00000448905 KIAA0232Q92628 1395 aa19.19■□□□□ 0.66
HMGB3-204ENST00000448905 EN1Q05925 392 aaPredicted RBP19.18■□□□□ 0.66
HMGB3-204ENST00000448905 PDE3BQ13370 1112 aa19.18■□□□□ 0.66
HMGB3-204ENST00000448905 SPATA31A1Q5TZJ5 1347 aa19.18■□□□□ 0.66
HMGB3-204ENST00000448905 NBPF1Q3BBV0 1214 aa19.17■□□□□ 0.66
HMGB3-204ENST00000448905 USP35Q9P2H5 1018 aa19.17■□□□□ 0.66
HMGB3-204ENST00000448905 TRPM3Q9HCF6 1732 aaPredicted RBP19.17■□□□□ 0.66
HMGB3-204ENST00000448905 NRAPQ86VF7 1730 aa19.15■□□□□ 0.66
HMGB3-204ENST00000448905 POLR3AO14802 1390 aaPredicted RBP19.15■□□□□ 0.66
HMGB3-204ENST00000448905 BARGINQ6ZT62 677 aa19.14■□□□□ 0.65
HMGB3-204ENST00000448905 CENPJQ9HC77 1338 aaPredicted RBP19.14■□□□□ 0.65
HMGB3-204ENST00000448905 GCP02774 474 aa19.13■□□□□ 0.65
HMGB3-204ENST00000448905 ALS2Q96Q42 1657 aa19.13■□□□□ 0.65
HMGB3-204ENST00000448905 TRIM37O94972 964 aa19.12■□□□□ 0.65
HMGB3-204ENST00000448905 APBA3O96018 575 aa19.12■□□□□ 0.65
HMGB3-204ENST00000448905 TCP11L2Q8N4U5 519 aa19.12■□□□□ 0.65
HMGB3-204ENST00000448905 THRAP3Q9Y2W1 955 aaKnown RBP19.12■□□□□ 0.65
HMGB3-204ENST00000448905 ATP7BP35670 1465 aa19.11■□□□□ 0.65
HMGB3-204ENST00000448905 C11orf95C9JLR9 678 aaPredicted RBP19.11■□□□□ 0.65
HMGB3-204ENST00000448905 CABP2Q9NPB3 220 aa19.11■□□□□ 0.65
HMGB3-204ENST00000448905 BRD4O60885 1362 aaPredicted RBP19.1■□□□□ 0.65
HMGB3-204ENST00000448905 CABP1Q9NZU7 370 aa19.1■□□□□ 0.65
HMGB3-204ENST00000448905 COL14A1Q05707 1796 aaKnown RBP19.1■□□□□ 0.65
HMGB3-204ENST00000448905 NLRP6P59044 892 aa19.09■□□□□ 0.65
HMGB3-204ENST00000448905 R3HDM1Q15032 1099 aaKnown RBP19.09■□□□□ 0.65
HMGB3-204ENST00000448905 EZH2Q15910 746 aaKnown RBP19.09■□□□□ 0.65
HMGB3-204ENST00000448905 LARP1Q6PKG0 1096 aaKnown RBP19.09■□□□□ 0.65
HMGB3-204ENST00000448905 CPDO75976 1380 aa19.07■□□□□ 0.64
HMGB3-204ENST00000448905 NBPF14Q5TI25 921 aa19.07■□□□□ 0.64
HMGB3-204ENST00000448905 CAMKK2Q96RR4 588 aa19.07■□□□□ 0.64
HMGB3-204ENST00000448905 EVC2Q86UK5 1308 aa19.06■□□□□ 0.64
HMGB3-204ENST00000448905 CRYBG1Q9Y4K1 1723 aa19.06■□□□□ 0.64
HMGB3-204ENST00000448905 ZBTB7CA1YPR0 619 aa19.06■□□□□ 0.64
HMGB3-204ENST00000448905 L3MBTL2Q969R5 705 aa19.06■□□□□ 0.64
HMGB3-204ENST00000448905 ZNF692Q9BU19 519 aaPredicted RBP19.06■□□□□ 0.64
HMGB3-204ENST00000448905 PPIP5K1Q6PFW1 1433 aa19.06■□□□□ 0.64
HMGB3-204ENST00000448905 USP19O94966 1318 aa19.05■□□□□ 0.64
HMGB3-204ENST00000448905 LRP5O75197 1615 aa19.04■□□□□ 0.64
HMGB3-204ENST00000448905 SSH2Q76I76 1423 aa19.04■□□□□ 0.64
HMGB3-204ENST00000448905 PARD3Q8TEW0 1356 aa19.03■□□□□ 0.64
HMGB3-204ENST00000448905 RGPD1P0DJD0 1748 aa19.03■□□□□ 0.64
HMGB3-204ENST00000448905 DISP2A7MBM2 1401 aa19.02■□□□□ 0.64
HMGB3-204ENST00000448905 THSD7AQ9UPZ6 1657 aa19.01■□□□□ 0.63
HMGB3-204ENST00000448905 NEUROD1Q13562 356 aa19.01■□□□□ 0.63
HMGB3-204ENST00000448905 KCNH5Q8NCM2 988 aa19.01■□□□□ 0.63
HMGB3-204ENST00000448905 ARHGEF28Q8N1W1 1705 aaKnown RBP19■□□□□ 0.63
HMGB3-204ENST00000448905 TNS1Q9HBL0 1735 aaKnown RBP19■□□□□ 0.63
HMGB3-204ENST00000448905 TOM1L2Q6ZVM7 507 aa19■□□□□ 0.63
HMGB3-204ENST00000448905 AATKQ6ZMQ8 1374 aa18.98■□□□□ 0.63
HMGB3-204ENST00000448905 DDB1Q16531 1140 aa18.98■□□□□ 0.63
HMGB3-204ENST00000448905 CDCA7Q9BWT1 371 aaPredicted RBP18.98■□□□□ 0.63
HMGB3-204ENST00000448905 PHRF1Q9P1Y6 1649 aaKnown RBP18.98■□□□□ 0.63
HMGB3-204ENST00000448905 SIN3AQ96ST3 1273 aa18.97■□□□□ 0.63
HMGB3-204ENST00000448905 ITSN1Q15811 1721 aa18.97■□□□□ 0.63
HMGB3-204ENST00000448905 CAMTA1Q9Y6Y1 1673 aa18.95■□□□□ 0.62
HMGB3-204ENST00000448905 USP6P35125 1406 aa18.95■□□□□ 0.62
HMGB3-204ENST00000448905 CRB1P82279 1406 aa18.95■□□□□ 0.62
HMGB3-204ENST00000448905 CSB-PGBD3P0DP91 1061 aa18.95■□□□□ 0.62
HMGB3-204ENST00000448905 ROCK2O75116 1388 aaKnown RBP18.94■□□□□ 0.62
HMGB3-204ENST00000448905 TTC21BQ7Z4L5 1316 aa18.94■□□□□ 0.62
HMGB3-204ENST00000448905 PLSCR1O15162 318 aa18.93■□□□□ 0.62
HMGB3-204ENST00000448905 ARHGEF25Q86VW2 580 aa18.93■□□□□ 0.62
HMGB3-204ENST00000448905 TTC21AQ8NDW8 1320 aa18.93■□□□□ 0.62
HMGB3-204ENST00000448905 BCL11BQ9C0K0 894 aaPredicted RBP18.92■□□□□ 0.62
HMGB3-204ENST00000448905 AXIN2Q9Y2T1 843 aa18.92■□□□□ 0.62
HMGB3-204ENST00000448905 WDR17Q8IZU2 1322 aa18.92■□□□□ 0.62
HMGB3-204ENST00000448905 KIAA1210Q9ULL0 1709 aa18.91■□□□□ 0.62
HMGB3-204ENST00000448905 COL5A2P05997 1499 aaPredicted RBP18.91■□□□□ 0.62
HMGB3-204ENST00000448905 DCAF8L1A6NGE4 600 aa18.91■□□□□ 0.62
HMGB3-204ENST00000448905 EXOC5O00471 708 aa18.91■□□□□ 0.62
HMGB3-204ENST00000448905 SOX12O15370 315 aa18.91■□□□□ 0.62
HMGB3-204ENST00000448905 CARD10Q9BWT7 1032 aa18.91■□□□□ 0.62
HMGB3-204ENST00000448905 SPON1Q9HCB6 807 aa18.91■□□□□ 0.62
HMGB3-204ENST00000448905 PPP1R1BQ9UD71 204 aaPredicted RBP18.91■□□□□ 0.62
HMGB3-204ENST00000448905 TOPAZ1Q8N9V7 1692 aa18.89■□□□□ 0.61
HMGB3-204ENST00000448905 OVOS2A0A0G2JMS6 1433 aa18.88■□□□□ 0.61
HMGB3-204ENST00000448905 OVOS2A0A0J9YW53 1432 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms