RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 NOVA2Q9UNW9 492 aaKnown RBP9.15□□□□□ -0.94
MCF2-206ENST00000446225 HELBQ8NG08 1087 aaPredicted RBP9.15□□□□□ -0.95
MCF2-206ENST00000446225 IQGAP2Q13576 1575 aa9.14□□□□□ -0.95
MCF2-206ENST00000446225 SSFA2P28290 1259 aa9.14□□□□□ -0.95
MCF2-206ENST00000446225 TSC1Q92574 1164 aa9.14□□□□□ -0.95
MCF2-206ENST00000446225 ZC3H6P61129 1189 aaKnown RBP9.13□□□□□ -0.95
MCF2-206ENST00000446225 EPS8L1Q8TE68 723 aa9.13□□□□□ -0.95
MCF2-206ENST00000446225 KIF21BO75037 1637 aa9.13□□□□□ -0.95
MCF2-206ENST00000446225 SLC34A2O95436 690 aa9.13□□□□□ -0.95
MCF2-206ENST00000446225 PRSS12P56730 875 aa9.13□□□□□ -0.95
MCF2-206ENST00000446225 ZNF326Q5BKZ1 582 aaKnown RBP9.13□□□□□ -0.95
MCF2-206ENST00000446225 SERPINB4P48594 390 aa9.12□□□□□ -0.95
MCF2-206ENST00000446225 CDCA7LQ96GN5 454 aa9.12□□□□□ -0.95
MCF2-206ENST00000446225 PPP1R1BQ9UD71 204 aaPredicted RBP9.12□□□□□ -0.95
MCF2-206ENST00000446225 CARMIL2Q6F5E8 1435 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 ANKRD33BA6NCL7 494 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 KDM4AO75164 1064 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 BIN2Q9UBW5 565 aaPredicted RBP9.11□□□□□ -0.95
MCF2-206ENST00000446225 DISP1Q96F81 1524 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 UGGT2Q9NYU1 1516 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 GOLGA3Q08378 1498 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 NPAS4Q8IUM7 802 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 PIP4P2Q8N4L2 257 aa9.11□□□□□ -0.95
MCF2-206ENST00000446225 PTPRGP23470 1445 aa9.1□□□□□ -0.95
MCF2-206ENST00000446225 FDX1P10109 184 aa9.1□□□□□ -0.95
MCF2-206ENST00000446225 EIF4G2P78344 907 aaKnown RBP eCLIP9.1□□□□□ -0.95
MCF2-206ENST00000446225 UBXN4Q92575 508 aa9.1□□□□□ -0.95
MCF2-206ENST00000446225 TNIKQ9UKE5 1360 aa9.1□□□□□ -0.95
MCF2-206ENST00000446225 EYA1Q99502 592 aa9.09□□□□□ -0.95
MCF2-206ENST00000446225 VAMP1P23763 118 aa9.09□□□□□ -0.95
MCF2-206ENST00000446225 PNMA1Q8ND90 353 aa9.09□□□□□ -0.95
MCF2-206ENST00000446225 CTTNBP2Q8WZ74 1663 aa9.09□□□□□ -0.96
MCF2-206ENST00000446225 HOXA2O43364 376 aa9.08□□□□□ -0.96
MCF2-206ENST00000446225 RDH13Q8NBN7 331 aa9.08□□□□□ -0.96
MCF2-206ENST00000446225 SLAIN2Q9P270 581 aa9.08□□□□□ -0.96
MCF2-206ENST00000446225 PCDHGC3Q9UN70 934 aa9.08□□□□□ -0.96
MCF2-206ENST00000446225 POLR3GLQ9BT43 218 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 USP17L3A6NCW0 530 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 USP17L4A6NCW7 530 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 PLCG2P16885 1265 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 MTMR2Q13614 643 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 NAALADL2Q58DX5 795 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 USP17L2Q6R6M4 530 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 USP17L1Q7RTZ2 530 aa9.07□□□□□ -0.96
MCF2-206ENST00000446225 PIK3CDO00329 1044 aa9.06□□□□□ -0.96
MCF2-206ENST00000446225 FOSBP53539 338 aa9.06□□□□□ -0.96
MCF2-206ENST00000446225 USP46P62068 366 aa9.06□□□□□ -0.96
MCF2-206ENST00000446225 SF3A1Q15459 793 aaKnown RBP9.06□□□□□ -0.96
MCF2-206ENST00000446225 IER5LQ5T953 404 aa9.06□□□□□ -0.96
MCF2-206ENST00000446225 FAM196BA6NMK8 535 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 DNAJB2P25686 324 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 ATN1P54259 1190 aaPredicted RBP9.05□□□□□ -0.96
MCF2-206ENST00000446225 ZDHHC16Q969W1 377 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 KIAA0556O60303 1618 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L15C9J2P7 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L10C9JJH3 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L13C9JLJ4 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L12C9JPN9 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L11C9JVI0 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L21D6R901 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L18D6R9N7 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L22D6RA61 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L17D6RBQ6 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L19D6RCP7 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L20D6RJB6 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 NCLP19338 710 aaKnown RBP9.05□□□□□ -0.96
MCF2-206ENST00000446225 USP17L24Q0WX57 530 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 NR6A1Q15406 480 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 FAM198AQ9UFP1 575 aa9.05□□□□□ -0.96
MCF2-206ENST00000446225 CFAP99D6REC4 459 aa9.04□□□□□ -0.96
MCF2-206ENST00000446225 RECKO95980 971 aa9.04□□□□□ -0.96
MCF2-206ENST00000446225 GUCA2AQ02747 115 aa9.04□□□□□ -0.96
MCF2-206ENST00000446225 FAM69CQ0P6D2 419 aa9.04□□□□□ -0.96
MCF2-206ENST00000446225 CRTC2Q53ET0 693 aaPredicted RBP9.04□□□□□ -0.96
MCF2-206ENST00000446225 SLF2Q8IX21 1173 aa9.04□□□□□ -0.96
MCF2-206ENST00000446225 CLP1Q92989 425 aaKnown RBP9.04□□□□□ -0.96
MCF2-206ENST00000446225 TMEM134Q9H6X4 195 aa9.04□□□□□ -0.96
MCF2-206ENST00000446225 USP17L5A8MUK1 530 aa9.03□□□□□ -0.96
MCF2-206ENST00000446225 ATP2B4P23634 1241 aa9.03□□□□□ -0.96
MCF2-206ENST00000446225 NFATC2IPQ8NCF5 419 aa9.03□□□□□ -0.96
MCF2-206ENST00000446225 UACAQ9BZF9 1416 aa9.03□□□□□ -0.96
MCF2-206ENST00000446225 GALR2O43603 387 aaPredicted RBP9.02□□□□□ -0.97
MCF2-206ENST00000446225 ZNF454Q8N9F8 522 aa9.02□□□□□ -0.97
MCF2-206ENST00000446225 FAM200AQ8TCP9 573 aa9.02□□□□□ -0.97
MCF2-206ENST00000446225 HLA-CQ95604 372 aa9.02□□□□□ -0.97
MCF2-206ENST00000446225 PCDHGA4Q9Y5G9 962 aa9.02□□□□□ -0.97
MCF2-206ENST00000446225 FHOD3Q2V2M9 1422 aa9.02□□□□□ -0.97
MCF2-206ENST00000446225 SKIP12755 728 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 SCNN1AP37088 669 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 TAGLNQ01995 201 aaKnown RBP9.01□□□□□ -0.97
MCF2-206ENST00000446225 NUDT18Q6ZVK8 323 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 DEPDC4Q8N2C3 294 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 SAMD9Q5K651 1589 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 TSNAXIP1Q2TAA8 658 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 ANKRD13AQ8IZ07 590 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 ADAM33Q9BZ11 813 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 CWC22Q9HCG8 908 aaKnown RBP9.01□□□□□ -0.97
MCF2-206ENST00000446225 PLB1Q6P1J6 1458 aa9.01□□□□□ -0.97
MCF2-206ENST00000446225 FBXO33Q7Z6M2 555 aa9□□□□□ -0.97
MCF2-206ENST00000446225 PLEKHM2Q8IWE5 1019 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms