RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 KRT85P78386 507 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 ZNF592Q92610 1267 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 ERICH2A1L162 156 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 NPHP1O15259 732 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 KRT32Q14532 448 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 DHX57Q6P158 1386 aaKnown RBP8.52□□□□□ -1.05
VPS53-204ENST00000437048 UBXN4Q92575 508 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 ZSCAN31Q96LW9 406 aaPredicted RBP8.52□□□□□ -1.05
VPS53-204ENST00000437048 EVC2Q86UK5 1308 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 A0A0G2JS52 829 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 GNAI1P63096 354 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 CUX2O14529 1486 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 CETN2P41208 172 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 SMC2O95347 1197 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 NBPF1Q3BBV0 1214 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 PRPF40AO75400 957 aaKnown RBP8.51□□□□□ -1.05
VPS53-204ENST00000437048 SPECC1LQ69YQ0 1117 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 MPNDQ8N594 471 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 MARCH6O60337 910 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 GNAI3P08754 354 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 UVSSAQ2YD98 709 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 CFAP57Q96MR6 1250 aa8.51□□□□□ -1.05
VPS53-204ENST00000437048 R3HCC1Q9Y3T6 440 aaKnown RBP8.5□□□□□ -1.05
VPS53-204ENST00000437048 GRPEL1Q9HAV7 217 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 FYCO1Q9BQS8 1478 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 HFM1A2PYH4 1435 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 EPS15P42566 896 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 C14orf37Q86TY3 774 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 FAM114A1Q8IWE2 563 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 RNF214Q8ND24 703 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 NAA15Q9BXJ9 866 aaKnown RBP8.5□□□□□ -1.05
VPS53-204ENST00000437048 FMNL3Q8IVF7 1028 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 TCEAL9Q9UHQ7 104 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 MAGEC2Q9UBF1 373 aaPredicted RBP8.5□□□□□ -1.05
VPS53-204ENST00000437048 CCDC148Q8NFR7 591 aa8.5□□□□□ -1.05
VPS53-204ENST00000437048 SMC1AQ14683 1233 aaKnown RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 STAMBPO95630 424 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 SEPT7Q16181 437 aaKnown RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 BBXQ8WY36 941 aaPredicted RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 SWAP70Q9UH65 585 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 TAF7LQ5H9L4 462 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 CCDC146Q8IYE0 955 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 ANKRD18BA2A2Z9 1011 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 EFCAB2Q5VUJ9 269 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 PCMTD1Q96MG8 357 aaPredicted RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 RALYLQ86SE5 291 aaKnown RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 TAOK3Q9H2K8 898 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 BMS1Q14692 1282 aaKnown RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 PPFIBP1Q86W92 1011 aa8.49□□□□□ -1.05
VPS53-204ENST00000437048 SCAND2PQ9GZW5 306 aaPredicted RBP8.49□□□□□ -1.05
VPS53-204ENST00000437048 RUNDC1Q96C34 613 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 PKD2Q13563 968 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 CCDC50Q8IVM0 306 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 PDS5BQ9NTI5 1447 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 GCOM1H8Y6P7 765 aaPredicted RBP8.48□□□□□ -1.05
VPS53-204ENST00000437048 MYZAPP0CAP1 466 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 STMN4Q9H169 189 aaPredicted RBP8.48□□□□□ -1.05
VPS53-204ENST00000437048 PLIN1O60240 522 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 NOL8Q76FK4 1167 aaKnown RBP8.48□□□□□ -1.05
VPS53-204ENST00000437048 PPP6R1Q9UPN7 881 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 DNAJC21Q5F1R6 531 aaKnown RBP8.48□□□□□ -1.05
VPS53-204ENST00000437048 C6orf163Q5TEZ5 329 aa8.48□□□□□ -1.05
VPS53-204ENST00000437048 HOXA7P31268 230 aaPredicted RBP8.48□□□□□ -1.05
VPS53-204ENST00000437048 VPS36Q86VN1 386 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 CCDC171Q6TFL3 1326 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 FOXD4L6Q3SYB3 417 aaPredicted RBP8.47□□□□□ -1.05
VPS53-204ENST00000437048 ANKRD45Q5TZF3 282 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 FOXD4L3Q6VB84 417 aaPredicted RBP8.47□□□□□ -1.05
VPS53-204ENST00000437048 WASF1Q92558 559 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 FGFR1OPO95684 399 aaKnown RBP8.47□□□□□ -1.05
VPS53-204ENST00000437048 TRIM21P19474 475 aaKnown RBP8.47□□□□□ -1.05
VPS53-204ENST00000437048 BRPF3Q9ULD4 1205 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 TUBB2AQ13885 445 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 SH2D4BQ5SQS7 431 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 CNTROBQ8N137 903 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 TUBB2BQ9BVA1 445 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 ZNF397Q8NF99 534 aaPredicted RBP8.47□□□□□ -1.05
VPS53-204ENST00000437048 BACH2Q9BYV9 841 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 CLCN1P35523 988 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 PAIP2Q9BPZ3 127 aaKnown RBP8.47□□□□□ -1.05
VPS53-204ENST00000437048 CCDC88BA6NC98 1476 aa8.47□□□□□ -1.05
VPS53-204ENST00000437048 SLC3A2P08195 630 aaKnown RBP8.46□□□□□ -1.05
VPS53-204ENST00000437048 SFPQP23246 707 aaKnown RBP eCLIP8.46□□□□□ -1.05
VPS53-204ENST00000437048 C10orf67Q8IYJ2 551 aa8.46□□□□□ -1.05
VPS53-204ENST00000437048 CCDC181Q5TID7 509 aa8.46□□□□□ -1.05
VPS53-204ENST00000437048 PHAXQ9H814 394 aaKnown RBP8.46□□□□□ -1.05
VPS53-204ENST00000437048 UQCRHLA0A096LP55 91 aa8.46□□□□□ -1.05
VPS53-204ENST00000437048 UQCRHP07919 91 aa8.46□□□□□ -1.05
VPS53-204ENST00000437048 SYCP1Q15431 976 aa8.46□□□□□ -1.05
VPS53-204ENST00000437048 RBM33Q96EV2 1170 aaKnown RBP8.46□□□□□ -1.05
VPS53-204ENST00000437048 TTC14Q96N46 770 aa8.46□□□□□ -1.05
VPS53-204ENST00000437048 RBM25P49756 843 aaKnown RBP8.46□□□□□ -1.06
VPS53-204ENST00000437048 AIMP1Q12904 312 aaKnown RBP8.46□□□□□ -1.06
VPS53-204ENST00000437048 IFIT2P09913 472 aaKnown RBP8.46□□□□□ -1.06
VPS53-204ENST00000437048 CEP128Q6ZU80 1094 aa8.46□□□□□ -1.06
VPS53-204ENST00000437048 KRT222Q8N1A0 295 aa8.46□□□□□ -1.06
VPS53-204ENST00000437048 HSP90AB3PQ58FF7 597 aa8.46□□□□□ -1.06
VPS53-204ENST00000437048 SUPT6HQ7KZ85 1726 aaKnown RBP8.45□□□□□ -1.06
VPS53-204ENST00000437048 A0A1B0GUA9 196 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 KIF3CO14782 793 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms