RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LMOD1P29536 600 aaPredicted RBP6.87□□□□□ -1.31
HMGB3-203ENST00000430118 NR1H3Q13133 447 aa6.87□□□□□ -1.31
HMGB3-203ENST00000430118 ELOAQ14241 798 aaKnown RBP6.87□□□□□ -1.31
HMGB3-203ENST00000430118 MORN1Q5T089 497 aa6.87□□□□□ -1.31
HMGB3-203ENST00000430118 LYPD8Q6UX82 237 aa6.87□□□□□ -1.31
HMGB3-203ENST00000430118 MAFBQ9Y5Q3 323 aaPredicted RBP6.87□□□□□ -1.31
HMGB3-203ENST00000430118 ATP9BO43861 1147 aa6.86□□□□□ -1.31
HMGB3-203ENST00000430118 RFX1P22670 979 aa6.86□□□□□ -1.31
HMGB3-203ENST00000430118 NR6A1Q15406 480 aa6.86□□□□□ -1.31
HMGB3-203ENST00000430118 EPS8L1Q8TE68 723 aa6.86□□□□□ -1.31
HMGB3-203ENST00000430118 TFIP11Q9UBB9 837 aaKnown RBP6.86□□□□□ -1.31
HMGB3-203ENST00000430118 THOC2Q8NI27 1593 aaKnown RBP6.86□□□□□ -1.31
HMGB3-203ENST00000430118 HMGXB3Q12766 1538 aa6.86□□□□□ -1.31
HMGB3-203ENST00000430118 BHMG1C9JSJ3 638 aaPredicted RBP6.85□□□□□ -1.31
HMGB3-203ENST00000430118 MCCD1P59942 119 aaPredicted RBP6.85□□□□□ -1.31
HMGB3-203ENST00000430118 ADGRD1Q6QNK2 874 aa6.85□□□□□ -1.31
HMGB3-203ENST00000430118 SMARCA2P51531 1590 aa6.84□□□□□ -1.31
HMGB3-203ENST00000430118 TMEM88BA6NKF7 163 aa6.84□□□□□ -1.31
HMGB3-203ENST00000430118 ZBBXA8MT70 800 aa6.84□□□□□ -1.31
HMGB3-203ENST00000430118 DMRTA1Q5VZB9 504 aa6.84□□□□□ -1.31
HMGB3-203ENST00000430118 ZFRQ96KR1 1074 aaKnown RBP6.84□□□□□ -1.31
HMGB3-203ENST00000430118 VRTNQ9H8Y1 702 aa6.84□□□□□ -1.31
HMGB3-203ENST00000430118 PER1O15534 1290 aaPredicted RBP6.83□□□□□ -1.32
HMGB3-203ENST00000430118 PLEKHM2Q8IWE5 1019 aa6.83□□□□□ -1.32
HMGB3-203ENST00000430118 GPKOWQ92917 476 aaPredicted RBP eCLIP6.83□□□□□ -1.32
HMGB3-203ENST00000430118 GNEQ9Y223 722 aaKnown RBP6.83□□□□□ -1.32
HMGB3-203ENST00000430118 SLC27A5Q9Y2P5 690 aa6.83□□□□□ -1.32
HMGB3-203ENST00000430118 GPSM3Q9Y4H4 160 aa6.83□□□□□ -1.32
HMGB3-203ENST00000430118 LAMC3Q9Y6N6 1575 aa6.82□□□□□ -1.32
HMGB3-203ENST00000430118 PTPRNQ16849 979 aa6.82□□□□□ -1.32
HMGB3-203ENST00000430118 SYMPKQ92797 1274 aaKnown RBP6.82□□□□□ -1.32
HMGB3-203ENST00000430118 LRCH3Q96II8 777 aa6.82□□□□□ -1.32
HMGB3-203ENST00000430118 USB1Q9BQ65 265 aaKnown RBP6.82□□□□□ -1.32
HMGB3-203ENST00000430118 FKBPLQ9UIM3 349 aa6.82□□□□□ -1.32
HMGB3-203ENST00000430118 AMOTL2Q9Y2J4 779 aa6.82□□□□□ -1.32
HMGB3-203ENST00000430118 LZTS3O60299 673 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-203ENST00000430118 RNF40O75150 1001 aa6.81□□□□□ -1.32
HMGB3-203ENST00000430118 F12P00748 615 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-203ENST00000430118 TBC1D9Q6ZT07 1266 aa6.81□□□□□ -1.32
HMGB3-203ENST00000430118 SND1Q7KZF4 910 aaKnown RBP eCLIP6.81□□□□□ -1.32
HMGB3-203ENST00000430118 MRPL50Q8N5N7 158 aaKnown RBP6.81□□□□□ -1.32
HMGB3-203ENST00000430118 ARMC2Q8NEN0 867 aa6.81□□□□□ -1.32
HMGB3-203ENST00000430118 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-203ENST00000430118 HRO43593 1189 aa6.8□□□□□ -1.32
HMGB3-203ENST00000430118 FBXO45P0C2W1 286 aa6.8□□□□□ -1.32
HMGB3-203ENST00000430118 BRICD5Q6PL45 260 aa6.8□□□□□ -1.32
HMGB3-203ENST00000430118 PDS5BQ9NTI5 1447 aa6.8□□□□□ -1.32
HMGB3-203ENST00000430118 HCSTQ9UBK5 93 aa6.8□□□□□ -1.32
HMGB3-203ENST00000430118 MTMR7Q9Y216 660 aa6.8□□□□□ -1.32
HMGB3-203ENST00000430118 ATAD2BQ9ULI0 1458 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 FAM196BA6NMK8 535 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 NR1I2O75469 434 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 FMNL1O95466 1100 aaPredicted RBP6.79□□□□□ -1.32
HMGB3-203ENST00000430118 JUNDP17535 347 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 CCDC27Q2M243 656 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 KANK4Q5T7N3 995 aaPredicted RBP6.79□□□□□ -1.32
HMGB3-203ENST00000430118 STAC3Q96MF2 364 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 NESP48681 1621 aa6.79□□□□□ -1.32
HMGB3-203ENST00000430118 IVNS1ABPQ9Y6Y0 642 aa6.78□□□□□ -1.32
HMGB3-203ENST00000430118 BAZ1BQ9UIG0 1483 aaKnown RBP6.78□□□□□ -1.32
HMGB3-203ENST00000430118 BAZ1AQ9NRL2 1556 aaPredicted RBP6.78□□□□□ -1.32
HMGB3-203ENST00000430118 USP17L3A6NCW0 530 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L4A6NCW7 530 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 PUS10Q3MIT2 529 aaKnown RBP6.77□□□□□ -1.33
HMGB3-203ENST00000430118 MSS51Q4VC12 460 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 PDXDC2PQ6P474 469 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L2Q6R6M4 530 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L1Q7RTZ2 530 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 ANKK1Q8NFD2 765 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 THAP11Q96EK4 314 aa6.77□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L5A8MUK1 530 aa6.76□□□□□ -1.33
HMGB3-203ENST00000430118 PTK2Q05397 1052 aa6.76□□□□□ -1.33
HMGB3-203ENST00000430118 NBPF14Q5TI25 921 aa6.76□□□□□ -1.33
HMGB3-203ENST00000430118 BLOC1S3Q6QNY0 202 aa6.76□□□□□ -1.33
HMGB3-203ENST00000430118 RNF19BQ6ZMZ0 732 aa6.76□□□□□ -1.33
HMGB3-203ENST00000430118 CCER1Q8TC90 406 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-203ENST00000430118 SOWAHBA6NEL2 793 aa6.75□□□□□ -1.33
HMGB3-203ENST00000430118 ATP5J2-PTCD1G3V325 749 aa6.75□□□□□ -1.33
HMGB3-203ENST00000430118 MAP7D1Q3KQU3 841 aa6.75□□□□□ -1.33
HMGB3-203ENST00000430118 SCUBE3Q8IX30 993 aa6.75□□□□□ -1.33
HMGB3-203ENST00000430118 PLA2G2EQ9NZK7 142 aa6.75□□□□□ -1.33
HMGB3-203ENST00000430118 ZMIZ1Q9ULJ6 1067 aa6.75□□□□□ -1.33
HMGB3-203ENST00000430118 KIF21AQ7Z4S6 1674 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 CCNYL3P0C7X3 344 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 SKIP12755 728 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 ERCC3P19447 782 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 PPP4CP60510 307 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 KCTD12Q96CX2 325 aaKnown RBP6.74□□□□□ -1.33
HMGB3-203ENST00000430118 EVA1BQ9NVM1 165 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 TSR3Q9UJK0 312 aaKnown RBP6.74□□□□□ -1.33
HMGB3-203ENST00000430118 CHIC2Q9UKJ5 165 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 NOVA2Q9UNW9 492 aaKnown RBP6.74□□□□□ -1.33
HMGB3-203ENST00000430118 PCDHB3Q9Y5E6 796 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 SMARCA4P51532 1647 aa6.74□□□□□ -1.33
HMGB3-203ENST00000430118 MRC2Q9UBG0 1479 aa6.73□□□□□ -1.33
HMGB3-203ENST00000430118 DXOO77932 396 aaKnown RBP6.73□□□□□ -1.33
HMGB3-203ENST00000430118 SLFNL1Q499Z3 407 aa6.73□□□□□ -1.33
HMGB3-203ENST00000430118 TMEM164Q5U3C3 297 aa6.73□□□□□ -1.33
HMGB3-203ENST00000430118 TXNDC2Q86VQ3 553 aa6.73□□□□□ -1.33
HMGB3-203ENST00000430118 WDR62O43379 1518 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms