RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 MORC1Q86VD1 984 aa12.94□□□□□ -0.34
HMGCLL1-206ENST00000428842 GTF3C3Q9Y5Q9 886 aa12.94□□□□□ -0.34
HMGCLL1-206ENST00000428842 CDC42BPGQ6DT37 1551 aa12.94□□□□□ -0.34
HMGCLL1-206ENST00000428842 LTBP4Q8N2S1 1624 aa12.94□□□□□ -0.34
HMGCLL1-206ENST00000428842 PLEKHG3A1L390 1219 aa12.93□□□□□ -0.34
HMGCLL1-206ENST00000428842 TTC21BQ7Z4L5 1316 aa12.93□□□□□ -0.34
HMGCLL1-206ENST00000428842 PPP2R1AP30153 589 aa12.93□□□□□ -0.34
HMGCLL1-206ENST00000428842 CGNL1Q0VF96 1302 aa12.93□□□□□ -0.34
HMGCLL1-206ENST00000428842 ITSN1Q15811 1721 aa12.93□□□□□ -0.34
HMGCLL1-206ENST00000428842 ABTB2Q8N961 1025 aa12.92□□□□□ -0.34
HMGCLL1-206ENST00000428842 EMILIN1Q9Y6C2 1016 aa12.92□□□□□ -0.34
HMGCLL1-206ENST00000428842 USP6P35125 1406 aa12.92□□□□□ -0.34
HMGCLL1-206ENST00000428842 PARD3Q8TEW0 1356 aa12.92□□□□□ -0.34
HMGCLL1-206ENST00000428842 CADPS2Q86UW7 1296 aa12.92□□□□□ -0.34
HMGCLL1-206ENST00000428842 SLC24A1O60721 1099 aa12.91□□□□□ -0.34
HMGCLL1-206ENST00000428842 PHF23Q9BUL5 403 aaPredicted RBP12.91□□□□□ -0.34
HMGCLL1-206ENST00000428842 SALL2Q9Y467 1007 aaPredicted RBP12.91□□□□□ -0.34
HMGCLL1-206ENST00000428842 NLRP6P59044 892 aa12.91□□□□□ -0.34
HMGCLL1-206ENST00000428842 AKAP12Q02952 1782 aa12.9□□□□□ -0.34
HMGCLL1-206ENST00000428842 MTHFSP49914 203 aa12.9□□□□□ -0.34
HMGCLL1-206ENST00000428842 KRT28Q7Z3Y7 464 aa12.9□□□□□ -0.34
HMGCLL1-206ENST00000428842 EP400Q96L91 3159 aa12.9□□□□□ -0.34
HMGCLL1-206ENST00000428842 PUS7Q96PZ0 661 aaKnown RBP12.89□□□□□ -0.35
HMGCLL1-206ENST00000428842 MON2Q7Z3U7 1717 aa12.89□□□□□ -0.35
HMGCLL1-206ENST00000428842 MYBBP1AQ9BQG0 1328 aaKnown RBP12.88□□□□□ -0.35
HMGCLL1-206ENST00000428842 POLR3AO14802 1390 aaPredicted RBP12.88□□□□□ -0.35
HMGCLL1-206ENST00000428842 EDC4Q6P2E9 1401 aaKnown RBP12.88□□□□□ -0.35
HMGCLL1-206ENST00000428842 PIK3C2AO00443 1686 aa12.87□□□□□ -0.35
HMGCLL1-206ENST00000428842 UBAP1LF5GYI3 381 aa12.87□□□□□ -0.35
HMGCLL1-206ENST00000428842 ANKARQ7Z5J8 1434 aa12.87□□□□□ -0.35
HMGCLL1-206ENST00000428842 NRKQ7Z2Y5 1582 aa12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 SSH2Q76I76 1423 aa12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 ZC3H6P61129 1189 aaKnown RBP12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 CCDC146Q8IYE0 955 aa12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 COG3Q96JB2 828 aa12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 ZNF692Q9BU19 519 aaPredicted RBP12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 KIF20BQ96Q89 1820 aa12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 MAP2P11137 1827 aaKnown RBP12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 RALBP1Q15311 655 aa12.86□□□□□ -0.35
HMGCLL1-206ENST00000428842 NINLQ9Y2I6 1382 aa12.85□□□□□ -0.35
HMGCLL1-206ENST00000428842 POLKQ9UBT6 870 aa12.85□□□□□ -0.35
HMGCLL1-206ENST00000428842 LTV1Q96GA3 475 aaPredicted RBP12.84□□□□□ -0.35
HMGCLL1-206ENST00000428842 HSP90AB2PQ58FF8 381 aa12.84□□□□□ -0.35
HMGCLL1-206ENST00000428842 CHRNA2Q15822 529 aa12.83□□□□□ -0.35
HMGCLL1-206ENST00000428842 NLRP13Q86W25 1043 aa12.83□□□□□ -0.35
HMGCLL1-206ENST00000428842 ADAMTS8Q9UP79 889 aa12.83□□□□□ -0.35
HMGCLL1-206ENST00000428842 PNISRQ8TF01 805 aaKnown RBP12.83□□□□□ -0.36
HMGCLL1-206ENST00000428842 ROBO1Q9Y6N7 1651 aa12.83□□□□□ -0.36
HMGCLL1-206ENST00000428842 MARF1Q9Y4F3 1742 aaKnown RBP12.82□□□□□ -0.36
HMGCLL1-206ENST00000428842 CERKQ8TCT0 537 aa12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 MAP3K19Q56UN5 1328 aa12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 CCER2I3L3R5 266 aa12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 U2SURPO15042 1029 aaKnown RBP12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 OVOS2A0A0J9YW53 1432 aa12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 DCCP43146 1447 aa12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 OVOS2Q6IE36 1432 aa12.81□□□□□ -0.36
HMGCLL1-206ENST00000428842 PXDNQ92626 1479 aa12.8□□□□□ -0.36
HMGCLL1-206ENST00000428842 HMOX1P09601 288 aa12.8□□□□□ -0.36
HMGCLL1-206ENST00000428842 HNRNPUQ00839 825 aaKnown RBP eCLIP12.8□□□□□ -0.36
HMGCLL1-206ENST00000428842 AXIN2Q9Y2T1 843 aa12.8□□□□□ -0.36
HMGCLL1-206ENST00000428842 USHBP1Q8N6Y0 703 aa12.8□□□□□ -0.36
HMGCLL1-206ENST00000428842 NPHP3Q7Z494 1330 aa12.8□□□□□ -0.36
HMGCLL1-206ENST00000428842 TRPM3Q9HCF6 1732 aaPredicted RBP12.79□□□□□ -0.36
HMGCLL1-206ENST00000428842 GCP02774 474 aa12.79□□□□□ -0.36
HMGCLL1-206ENST00000428842 NEUROD2Q15784 382 aa12.79□□□□□ -0.36
HMGCLL1-206ENST00000428842 RRP7AQ9Y3A4 280 aaKnown RBP12.79□□□□□ -0.36
HMGCLL1-206ENST00000428842 NCOA3Q9Y6Q9 1424 aa12.79□□□□□ -0.36
HMGCLL1-206ENST00000428842 PEAK1Q9H792 1746 aa12.79□□□□□ -0.36
HMGCLL1-206ENST00000428842 SRCAPQ6ZRS2 3230 aa12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 NPC1L1Q9UHC9 1359 aa12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 ANKRD26Q9UPS8 1709 aa12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 NUTM2BA6NNL0 878 aaPredicted RBP12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 NUTM2EB1AL46 878 aaPredicted RBP12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 AEBP1Q8IUX7 1158 aa12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 NUTM2AQ8IVF1 878 aaPredicted RBP12.78□□□□□ -0.36
HMGCLL1-206ENST00000428842 MED1Q15648 1581 aaPredicted RBP12.77□□□□□ -0.36
HMGCLL1-206ENST00000428842 LRRC59Q96AG4 307 aaKnown RBP12.77□□□□□ -0.37
HMGCLL1-206ENST00000428842 SPATA31A3Q5VYP0 1347 aa12.77□□□□□ -0.37
HMGCLL1-206ENST00000428842 U2AF1L5P0DN76 240 aaPredicted RBP12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 AMPHP49418 695 aa12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 U2AF1Q01081 240 aaKnown RBP eCLIP12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 TTC21AQ8NDW8 1320 aa12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 BRD4O60885 1362 aaPredicted RBP12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 TOM1O60784 492 aa12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 ADAMTS2O95450 1211 aa12.76□□□□□ -0.37
HMGCLL1-206ENST00000428842 SOS2Q07890 1332 aaPredicted RBP12.75□□□□□ -0.37
HMGCLL1-206ENST00000428842 RGPD5Q99666 1765 aa12.75□□□□□ -0.37
HMGCLL1-206ENST00000428842 HAP1P54257 671 aaPredicted RBP12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 ALS2Q96Q42 1657 aa12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 EIF4A2Q14240 407 aaKnown RBP12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 WDR43Q15061 677 aaKnown RBP eCLIP12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 TNS3Q68CZ2 1445 aa12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 KIF1AQ12756 1690 aa12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 SHPRHQ149N8 1683 aa12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 LTN1O94822 1766 aa12.74□□□□□ -0.37
HMGCLL1-206ENST00000428842 NSD2O96028 1365 aa12.73□□□□□ -0.37
HMGCLL1-206ENST00000428842 KIAA0232Q92628 1395 aa12.73□□□□□ -0.37
HMGCLL1-206ENST00000428842 HOXC9P31274 260 aa12.73□□□□□ -0.37
HMGCLL1-206ENST00000428842 HSPA1LP34931 641 aa12.73□□□□□ -0.37
HMGCLL1-206ENST00000428842 USP35Q9P2H5 1018 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms