RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 USHBP1Q8N6Y0 703 aa15.88■□□□□ 0.13
SPG11-202ENST00000427534 NUP133Q8WUM0 1156 aa15.88■□□□□ 0.13
SPG11-202ENST00000427534 FKBP4Q02790 459 aaKnown RBP eCLIP15.88■□□□□ 0.13
SPG11-202ENST00000427534 TATP17735 454 aaPredicted RBP15.87■□□□□ 0.13
SPG11-202ENST00000427534 SULT6B1Q6IMI4 303 aa15.87■□□□□ 0.13
SPG11-202ENST00000427534 API5Q9BZZ5 524 aaKnown RBP15.87■□□□□ 0.13
SPG11-202ENST00000427534 MPNDQ8N594 471 aa15.87■□□□□ 0.13
SPG11-202ENST00000427534 CDK19Q9BWU1 502 aa15.87■□□□□ 0.13
SPG11-202ENST00000427534 ARAP1Q96P48 1450 aa15.87■□□□□ 0.13
SPG11-202ENST00000427534 MPHOSPH10O00566 681 aaKnown RBP15.87■□□□□ 0.13
SPG11-202ENST00000427534 CDCA7LQ96GN5 454 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 KRT18P05783 430 aaKnown RBP15.86■□□□□ 0.13
SPG11-202ENST00000427534 CABP1Q9NZU7 370 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 TBC1D2BQ9UPU7 963 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 ERC2O15083 957 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 REC8O95072 547 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 DDX11L8A8MPP1 907 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 GNAI1P63096 354 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 SASS6Q6UVJ0 657 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 RNF214Q8ND24 703 aa15.86■□□□□ 0.13
SPG11-202ENST00000427534 IPO7O95373 1038 aaKnown RBP15.85■□□□□ 0.13
SPG11-202ENST00000427534 GRIN2BQ13224 1484 aa15.85■□□□□ 0.13
SPG11-202ENST00000427534 ANKRD20A12PQ8NF67 263 aa15.85■□□□□ 0.13
SPG11-202ENST00000427534 ADAMTS8Q9UP79 889 aa15.85■□□□□ 0.13
SPG11-202ENST00000427534 ERICH3Q5RHP9 1530 aa15.85■□□□□ 0.13
SPG11-202ENST00000427534 WASHC2AQ641Q2 1341 aa15.85■□□□□ 0.13
SPG11-202ENST00000427534 CDK5RAP3Q96JB5 506 aa15.85■□□□□ 0.13
SPG11-202ENST00000427534 PTCD1O75127 700 aaKnown RBP15.85■□□□□ 0.13
SPG11-202ENST00000427534 TRMT1LQ7Z2T5 733 aaKnown RBP15.84■□□□□ 0.13
SPG11-202ENST00000427534 MATR3P43243 847 aaKnown RBP eCLIP15.84■□□□□ 0.13
SPG11-202ENST00000427534 PLEKHO1Q53GL0 409 aaPredicted RBP15.84■□□□□ 0.13
SPG11-202ENST00000427534 INTS3Q68E01 1043 aaKnown RBP15.84■□□□□ 0.13
SPG11-202ENST00000427534 ATP6V1DQ9Y5K8 247 aa15.84■□□□□ 0.13
SPG11-202ENST00000427534 SLC4A2P04920 1241 aa15.83■□□□□ 0.13
SPG11-202ENST00000427534 PRDM11Q9NQV5 511 aa15.83■□□□□ 0.13
SPG11-202ENST00000427534 BRMS1Q9HCU9 246 aa15.83■□□□□ 0.13
SPG11-202ENST00000427534 RRBP1Q9P2E9 1410 aaKnown RBP15.83■□□□□ 0.12
SPG11-202ENST00000427534 OFD1O75665 1012 aa15.83■□□□□ 0.12
SPG11-202ENST00000427534 EXOSC9Q06265 439 aaKnown RBP15.83■□□□□ 0.12
SPG11-202ENST00000427534 NOB1Q9ULX3 412 aaKnown RBP15.83■□□□□ 0.12
SPG11-202ENST00000427534 SLC12A5Q9H2X9 1139 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 USP5P45974 858 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 WWC2Q6AWC2 1192 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 ZNF530Q6P9A1 599 aaPredicted RBP15.82■□□□□ 0.12
SPG11-202ENST00000427534 CFTRP13569 1480 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 NBPF1Q3BBV0 1214 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 CNTROBQ8N137 903 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 TTLL12Q14166 644 aaPredicted RBP15.82■□□□□ 0.12
SPG11-202ENST00000427534 CCDC30Q5VVM6 783 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 CCDC70Q6NSX1 233 aa15.82■□□□□ 0.12
SPG11-202ENST00000427534 MPHOSPH8Q99549 860 aa15.81■□□□□ 0.12
SPG11-202ENST00000427534 SYNJ1O43426 1573 aa15.81■□□□□ 0.12
SPG11-202ENST00000427534 IFT57Q9NWB7 429 aa15.8■□□□□ 0.12
SPG11-202ENST00000427534 HOOK1Q9UJC3 728 aaKnown RBP15.8■□□□□ 0.12
SPG11-202ENST00000427534 PPM1FP49593 454 aaPredicted RBP15.8■□□□□ 0.12
SPG11-202ENST00000427534 C11orf95C9JLR9 678 aaPredicted RBP15.8■□□□□ 0.12
SPG11-202ENST00000427534 BRD4O60885 1362 aaPredicted RBP15.8■□□□□ 0.12
SPG11-202ENST00000427534 BCAR3O75815 825 aa15.8■□□□□ 0.12
SPG11-202ENST00000427534 HDGFL1Q5TGJ6 251 aa15.79■□□□□ 0.12
SPG11-202ENST00000427534 WDR78Q5VTH9 848 aa15.79■□□□□ 0.12
SPG11-202ENST00000427534 CCDC73Q6ZRK6 1079 aa15.79■□□□□ 0.12
SPG11-202ENST00000427534 SMG6Q86US8 1419 aaKnown RBP15.79■□□□□ 0.12
SPG11-202ENST00000427534 CCDC158Q5M9N0 1113 aa15.79■□□□□ 0.12
SPG11-202ENST00000427534 SSBP05455 408 aaKnown RBP eCLIP15.79■□□□□ 0.12
SPG11-202ENST00000427534 BTBD11A6QL63 1104 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 CAGE1Q8TC20 777 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 RAI14Q9P0K7 980 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 SMC2O95347 1197 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 TWISTNBQ3B726 338 aaPredicted RBP15.78■□□□□ 0.12
SPG11-202ENST00000427534 TCP11L2Q8N4U5 519 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 ROCK1Q13464 1354 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 SYNJ2O15056 1496 aa15.78■□□□□ 0.12
SPG11-202ENST00000427534 PRG4Q92954 1404 aaPredicted RBP15.77■□□□□ 0.12
SPG11-202ENST00000427534 SDF4Q9BRK5 362 aa15.77■□□□□ 0.12
SPG11-202ENST00000427534 WDR70Q9NW82 654 aa15.77■□□□□ 0.12
SPG11-202ENST00000427534 MPRIPQ6WCQ1 1025 aa15.77■□□□□ 0.12
SPG11-202ENST00000427534 CLASRPQ8N2M8 674 aaKnown RBP15.77■□□□□ 0.12
SPG11-202ENST00000427534 OLFM4Q6UX06 510 aa15.77■□□□□ 0.11
SPG11-202ENST00000427534 C22orf23Q9BZE7 217 aa15.76■□□□□ 0.11
SPG11-202ENST00000427534 SEPT11Q9NVA2 429 aaKnown RBP15.76■□□□□ 0.11
SPG11-202ENST00000427534 ABCF2Q9UG63 623 aa15.76■□□□□ 0.11
SPG11-202ENST00000427534 FANCIQ9NVI1 1328 aa15.76■□□□□ 0.11
SPG11-202ENST00000427534 CEBPAP49715 358 aaPredicted RBP15.76■□□□□ 0.11
SPG11-202ENST00000427534 ZNF771Q7L3S4 317 aaPredicted RBP15.76■□□□□ 0.11
SPG11-202ENST00000427534 NINLQ9Y2I6 1382 aa15.76■□□□□ 0.11
SPG11-202ENST00000427534 SART3Q15020 963 aaKnown RBP15.76■□□□□ 0.11
SPG11-202ENST00000427534 XBP1P17861 261 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 SKOR2Q2VWA4 1001 aaPredicted RBP15.75■□□□□ 0.11
SPG11-202ENST00000427534 SPC24Q8NBT2 197 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 DCTN1Q14203 1278 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 WAPLQ7Z5K2 1190 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 TANGO6Q9C0B7 1094 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 IL1RAPL2Q9NP60 686 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 CCDC57Q2TAC2 916 aa15.75■□□□□ 0.11
SPG11-202ENST00000427534 FAM13BQ9NYF5 915 aa15.74■□□□□ 0.11
SPG11-202ENST00000427534 SLC3A2P08195 630 aaKnown RBP15.74■□□□□ 0.11
SPG11-202ENST00000427534 PPP2R1AP30153 589 aa15.74■□□□□ 0.11
SPG11-202ENST00000427534 HSP90AB4PQ58FF6 505 aa15.74■□□□□ 0.11
SPG11-202ENST00000427534 PRXQ9BXM0 1461 aa15.74■□□□□ 0.11
SPG11-202ENST00000427534 THUMPD2Q9BTF0 503 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms