RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PPP4R3AQ6IN85 833 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 RSPH6AQ9H0K4 717 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 ZNF287Q9HBT7 754 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 SOGA3Q5TF21 947 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 TRIM22Q8IYM9 498 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 GAS2L2Q8NHY3 880 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 TMOD2Q9NZR1 351 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 ENOX2Q16206 610 aaKnown RBP8.16□□□□□ -1.1
SCN1A-204ENST00000423058 CLASRPQ8N2M8 674 aaKnown RBP8.16□□□□□ -1.1
SCN1A-204ENST00000423058 DZIP1LQ8IYY4 767 aaKnown RBP8.16□□□□□ -1.1
SCN1A-204ENST00000423058 BMP2KQ9NSY1 1161 aaPredicted RBP8.16□□□□□ -1.1
SCN1A-204ENST00000423058 FAM69CQ0P6D2 419 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 RUNDC1Q96C34 613 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 FEZ1Q99689 392 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 PTPRGP23470 1445 aa8.16□□□□□ -1.1
SCN1A-204ENST00000423058 ABTB2Q8N961 1025 aa8.15□□□□□ -1.1
SCN1A-204ENST00000423058 RRBP1Q9P2E9 1410 aaKnown RBP8.15□□□□□ -1.1
SCN1A-204ENST00000423058 IQCEQ6IPM2 695 aa8.15□□□□□ -1.1
SCN1A-204ENST00000423058 FOSBP53539 338 aa8.15□□□□□ -1.1
SCN1A-204ENST00000423058 GRIPAP1Q4V328 841 aa8.15□□□□□ -1.1
SCN1A-204ENST00000423058 TDRD9Q8NDG6 1382 aaKnown RBP8.15□□□□□ -1.11
SCN1A-204ENST00000423058 TATP17735 454 aaPredicted RBP8.15□□□□□ -1.11
SCN1A-204ENST00000423058 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.15□□□□□ -1.11
SCN1A-204ENST00000423058 DRC1Q96MC2 740 aa8.15□□□□□ -1.11
SCN1A-204ENST00000423058 MCM2P49736 904 aa8.15□□□□□ -1.11
SCN1A-204ENST00000423058 MPHOSPH8Q99549 860 aa8.15□□□□□ -1.11
SCN1A-204ENST00000423058 DEF6Q9H4E7 631 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 ANKRD1Q15327 319 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 FSD1Q9BTV5 496 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC69A6NI79 296 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 ZNF76P36508 570 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 CETN2P41208 172 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 RBM42Q9BTD8 480 aaKnown RBP8.14□□□□□ -1.11
SCN1A-204ENST00000423058 SMC2O95347 1197 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC150Q8NCX0 1101 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 SCAPERQ9BY12 1400 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC57Q2TAC2 916 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 BCL2L13Q9BXK5 485 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 PPP1R12BO60237 982 aaPredicted RBP8.14□□□□□ -1.11
SCN1A-204ENST00000423058 GNAI3P08754 354 aa8.14□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC91Q7Z6B0 441 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 ZSCAN29Q8IWY8 852 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-204ENST00000423058 WIZO95785 1651 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 STRN4Q9NRL3 753 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 NOL7Q9UMY1 257 aaKnown RBP8.13□□□□□ -1.11
SCN1A-204ENST00000423058 CDKL5O76039 1030 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 ANAPC15P60006 121 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 INCENPQ9NQS7 918 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 ARHGAP5Q13017 1502 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 SPG7Q9UQ90 795 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 FYCO1Q9BQS8 1478 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 CABP4P57796 275 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC181Q5TID7 509 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 ZNF652Q9Y2D9 606 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 ZHX3Q9H4I2 956 aa8.13□□□□□ -1.11
SCN1A-204ENST00000423058 L3MBTL2Q969R5 705 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 ESCO1Q5FWF5 840 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 TTLL5Q6EMB2 1281 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 TOP2AP11388 1531 aaKnown RBP8.12□□□□□ -1.11
SCN1A-204ENST00000423058 STAMBPO95630 424 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC88BA6NC98 1476 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 NLRP6P59044 892 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 JAKMIP3Q5VZ66 844 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 USP47Q96K76 1375 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 ST20-MTHFSA0A0A6YYL1 179 aa8.12□□□□□ -1.11
SCN1A-204ENST00000423058 PNISRQ8TF01 805 aaKnown RBP8.12□□□□□ -1.11
SCN1A-204ENST00000423058 CT47B1P0C2W7 299 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-204ENST00000423058 PPFIBP1Q86W92 1011 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC112Q8NEF3 446 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 TANGO6Q9C0B7 1094 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC39Q9UFE4 941 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 FAM177BA6PVY3 158 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 LEKR1Q6ZMV7 388 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 MPHOSPH6Q99547 160 aaKnown RBP8.11□□□□□ -1.11
SCN1A-204ENST00000423058 HOMER2Q9NSB8 354 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 POGZQ7Z3K3 1410 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 BRPF1P55201 1214 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-204ENST00000423058 TOM1L2Q6ZVM7 507 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 DNAJC2Q99543 621 aaKnown RBP8.11□□□□□ -1.11
SCN1A-204ENST00000423058 PROSER2Q86WR7 435 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-204ENST00000423058 EHMT1Q9H9B1 1298 aa8.11□□□□□ -1.11
SCN1A-204ENST00000423058 FAM13BQ9NYF5 915 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 SKIDA1Q1XH10 827 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 AXDND1Q5T1B0 1012 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 HMGN5P82970 282 aaKnown RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 PAXIP1Q6ZW49 1069 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 ZNF397Q8NF99 534 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 SCLT1Q96NL6 688 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 EPB41L2O43491 1005 aaKnown RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 THEMISQ8N1K5 641 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 WASF1Q92558 559 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 SEC63Q9UGP8 760 aaKnown RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 FHOD3Q2V2M9 1422 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 NUTM2BA6NNL0 878 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 NUTM2EB1AL46 878 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 CDC45O75419 566 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 KIAA0754O94854 1291 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 RRP1P56182 461 aaKnown RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 GIGYF2Q6Y7W6 1299 aaKnown RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 NUTM2AQ8IVF1 878 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms