RNA–Protein interactions for RNA: ENST00000418336.6

PKNOX1-202, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-202ENST00000418336 QTRT2Q9H974 415 aaKnown RBP29.37■■■□□ 2.29
PKNOX1-202ENST00000418336 SSH2Q76I76 1423 aa29.37■■■□□ 2.29
PKNOX1-202ENST00000418336 USP21Q9UK80 565 aa29.36■■■□□ 2.29
PKNOX1-202ENST00000418336 PLCH1Q4KWH8 1693 aa29.35■■■□□ 2.29
PKNOX1-202ENST00000418336 RXRBP28702 533 aa29.35■■■□□ 2.29
PKNOX1-202ENST00000418336 CABP1Q9NZU7 370 aa29.35■■■□□ 2.29
PKNOX1-202ENST00000418336 TIMELESSQ9UNS1 1208 aa29.35■■■□□ 2.29
PKNOX1-202ENST00000418336 LMOD2Q6P5Q4 547 aa29.34■■■□□ 2.29
PKNOX1-202ENST00000418336 PHRF1Q9P1Y6 1649 aaKnown RBP29.34■■■□□ 2.29
PKNOX1-202ENST00000418336 TESK2Q96S53 571 aa29.33■■■□□ 2.29
PKNOX1-202ENST00000418336 RGS12O14924 1447 aa29.33■■■□□ 2.29
PKNOX1-202ENST00000418336 USP6P35125 1406 aa29.32■■■□□ 2.28
PKNOX1-202ENST00000418336 AKAP12Q02952 1782 aa29.31■■■□□ 2.28
PKNOX1-202ENST00000418336 NWD2Q9ULI1 1742 aa29.31■■■□□ 2.28
PKNOX1-202ENST00000418336 RBM6P78332 1123 aaKnown RBP29.31■■■□□ 2.28
PKNOX1-202ENST00000418336 FAM83GA6ND36 823 aa29.3■■■□□ 2.28
PKNOX1-202ENST00000418336 PAK3O75914 559 aaPredicted RBP29.3■■■□□ 2.28
PKNOX1-202ENST00000418336 CPSF1Q10570 1443 aaKnown RBP29.29■■■□□ 2.28
PKNOX1-202ENST00000418336 TRPC5Q9UL62 973 aaPredicted RBP29.29■■■□□ 2.28
PKNOX1-202ENST00000418336 NRAPQ86VF7 1730 aa29.28■■■□□ 2.28
PKNOX1-202ENST00000418336 BRD4O60885 1362 aaPredicted RBP29.28■■■□□ 2.28
PKNOX1-202ENST00000418336 NRKQ7Z2Y5 1582 aa29.28■■■□□ 2.28
PKNOX1-202ENST00000418336 CD163L1Q9NR16 1453 aa29.28■■■□□ 2.28
PKNOX1-202ENST00000418336 ATAD2Q6PL18 1390 aa29.27■■■□□ 2.28
PKNOX1-202ENST00000418336 PLEKHG5O94827 1062 aa29.27■■■□□ 2.28
PKNOX1-202ENST00000418336 UNC5CLQ8IV45 518 aa29.27■■■□□ 2.28
PKNOX1-202ENST00000418336 GLI3P10071 1580 aa29.26■■■□□ 2.28
PKNOX1-202ENST00000418336 USP19O94966 1318 aa29.26■■■□□ 2.27
PKNOX1-202ENST00000418336 PIK3C2AO00443 1686 aa29.25■■■□□ 2.27
PKNOX1-202ENST00000418336 ST20-MTHFSA0A0A6YYL1 179 aa29.25■■■□□ 2.27
PKNOX1-202ENST00000418336 COL14A1Q05707 1796 aaKnown RBP29.25■■■□□ 2.27
PKNOX1-202ENST00000418336 NUTM2GQ5VZR2 741 aa29.22■■■□□ 2.27
PKNOX1-202ENST00000418336 MON2Q7Z3U7 1717 aa29.22■■■□□ 2.27
PKNOX1-202ENST00000418336 HAP1P54257 671 aaPredicted RBP29.21■■■□□ 2.27
PKNOX1-202ENST00000418336 PUS7Q96PZ0 661 aaKnown RBP29.21■■■□□ 2.27
PKNOX1-202ENST00000418336 USP47Q96K76 1375 aa29.21■■■□□ 2.27
PKNOX1-202ENST00000418336 GJD4Q96KN9 370 aaPredicted RBP29.2■■■□□ 2.26
PKNOX1-202ENST00000418336 SLIT3O75094 1523 aa29.2■■■□□ 2.26
PKNOX1-202ENST00000418336 ABTB2Q8N961 1025 aa29.19■■■□□ 2.26
PKNOX1-202ENST00000418336 CCER1Q8TC90 406 aaPredicted RBP29.18■■■□□ 2.26
PKNOX1-202ENST00000418336 KIAA0232Q92628 1395 aa29.17■■■□□ 2.26
PKNOX1-202ENST00000418336 VPS72Q15906 364 aa29.17■■■□□ 2.26
PKNOX1-202ENST00000418336 LMO7Q8WWI1 1683 aa29.16■■■□□ 2.26
PKNOX1-202ENST00000418336 ZNF692Q9BU19 519 aaPredicted RBP29.16■■■□□ 2.26
PKNOX1-202ENST00000418336 TTC21BQ7Z4L5 1316 aa29.15■■■□□ 2.26
PKNOX1-202ENST00000418336 CPDO75976 1380 aa29.14■■■□□ 2.26
PKNOX1-202ENST00000418336 BTG4Q9NY30 223 aa29.13■■■□□ 2.25
PKNOX1-202ENST00000418336 USP54Q70EL1 1684 aa29.12■■■□□ 2.25
PKNOX1-202ENST00000418336 SLC12A5Q9H2X9 1139 aa29.12■■■□□ 2.25
PKNOX1-202ENST00000418336 KTN1Q86UP2 1357 aaKnown RBP29.12■■■□□ 2.25
PKNOX1-202ENST00000418336 GCP02774 474 aa29.11■■■□□ 2.25
PKNOX1-202ENST00000418336 NLRP13Q86W25 1043 aa29.11■■■□□ 2.25
PKNOX1-202ENST00000418336 ZC3H6P61129 1189 aaKnown RBP29.1■■■□□ 2.25
PKNOX1-202ENST00000418336 CAMTA1Q9Y6Y1 1673 aa29.09■■■□□ 2.25
PKNOX1-202ENST00000418336 ONECUT3O60422 494 aaPredicted RBP29.09■■■□□ 2.25
PKNOX1-202ENST00000418336 CHRNA2Q15822 529 aa29.09■■■□□ 2.25
PKNOX1-202ENST00000418336 PRDM11Q9NQV5 511 aa29.09■■■□□ 2.25
PKNOX1-202ENST00000418336 A0A1W2PP64 1363 aa29.09■■■□□ 2.25
PKNOX1-202ENST00000418336 UPF1Q92900 1129 aaKnown RBP eCLIP29.08■■■□□ 2.25
PKNOX1-202ENST00000418336 TTC21AQ8NDW8 1320 aa29.08■■■□□ 2.25
PKNOX1-202ENST00000418336 EP400Q96L91 3159 aa29.08■■■□□ 2.25
PKNOX1-202ENST00000418336 COL18A1P39060 1754 aa29.07■■■□□ 2.24
PKNOX1-202ENST00000418336 NLRP6P59044 892 aa29.06■■■□□ 2.24
PKNOX1-202ENST00000418336 USP31Q70CQ4 1352 aa29.05■■■□□ 2.24
PKNOX1-202ENST00000418336 BRWD3Q6RI45 1802 aa29.05■■■□□ 2.24
PKNOX1-202ENST00000418336 NFAT5O94916 1531 aa29.04■■■□□ 2.24
PKNOX1-202ENST00000418336 NINLQ9Y2I6 1382 aa29.04■■■□□ 2.24
PKNOX1-202ENST00000418336 SPATA31A5Q5VU36 1347 aa29.03■■■□□ 2.24
PKNOX1-202ENST00000418336 SPATA31A7Q8IWB4 1347 aa29.03■■■□□ 2.24
PKNOX1-202ENST00000418336 SLC24A1O60721 1099 aa29.03■■■□□ 2.24
PKNOX1-202ENST00000418336 TMC1Q8TDI8 760 aa29.03■■■□□ 2.24
PKNOX1-202ENST00000418336 EDC4Q6P2E9 1401 aaKnown RBP29.03■■■□□ 2.24
PKNOX1-202ENST00000418336 ZRANB1Q9UGI0 708 aa29.02■■■□□ 2.24
PKNOX1-202ENST00000418336 MYOM1P52179 1685 aa29.01■■■□□ 2.23
PKNOX1-202ENST00000418336 THSD7AQ9UPZ6 1657 aa29.01■■■□□ 2.23
PKNOX1-202ENST00000418336 TMF1P82094 1093 aa28.99■■■□□ 2.23
PKNOX1-202ENST00000418336 NME9Q86XW9 330 aa28.98■■■□□ 2.23
PKNOX1-202ENST00000418336 AATKQ6ZMQ8 1374 aa28.98■■■□□ 2.23
PKNOX1-202ENST00000418336 COL5A2P05997 1499 aaPredicted RBP28.97■■■□□ 2.23
PKNOX1-202ENST00000418336 SPATA31A1Q5TZJ5 1347 aa28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 OVOS2A0A0J9YW53 1432 aa28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 OVOS2Q6IE36 1432 aa28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 HDGFL2Q7Z4V5 671 aaPredicted RBP28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 SEPT12Q8IYM1 358 aa28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 ANKRD36BQ8N2N9 1353 aa28.96■■■□□ 2.23
PKNOX1-202ENST00000418336 ARHGEF25Q86VW2 580 aa28.95■■■□□ 2.22
PKNOX1-202ENST00000418336 TERF2IPQ9NYB0 399 aa28.95■■■□□ 2.22
PKNOX1-202ENST00000418336 AXIN2Q9Y2T1 843 aa28.93■■■□□ 2.22
PKNOX1-202ENST00000418336 CCDC9Q9Y3X0 531 aaKnown RBP28.93■■■□□ 2.22
PKNOX1-202ENST00000418336 FAM98CQ17RN3 349 aaKnown RBP28.92■■■□□ 2.22
PKNOX1-202ENST00000418336 LARP1Q6PKG0 1096 aaKnown RBP28.91■■■□□ 2.22
PKNOX1-202ENST00000418336 STRN4Q9NRL3 753 aa28.91■■■□□ 2.22
PKNOX1-202ENST00000418336 KCNH5Q8NCM2 988 aa28.9■■■□□ 2.22
PKNOX1-202ENST00000418336 ABCC6O95255 1503 aa28.89■■■□□ 2.22
PKNOX1-202ENST00000418336 RGPD5Q99666 1765 aa28.89■■■□□ 2.22
PKNOX1-202ENST00000418336 HSPA5P11021 654 aaKnown RBP28.88■■■□□ 2.21
PKNOX1-202ENST00000418336 CDCA8Q53HL2 280 aa28.85■■■□□ 2.21
PKNOX1-202ENST00000418336 LTN1O94822 1766 aa28.84■■■□□ 2.21
PKNOX1-202ENST00000418336 SOX12O15370 315 aa28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms