RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 FNBP4Q8N3X1 1017 aaPredicted RBP26.72■■□□□ 1.87
TRIM56-202ENST00000412507 CCER1Q8TC90 406 aaPredicted RBP26.72■■□□□ 1.87
TRIM56-202ENST00000412507 QTRT2Q9H974 415 aaKnown RBP26.72■■□□□ 1.87
TRIM56-202ENST00000412507 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.72■■□□□ 1.87
TRIM56-202ENST00000412507 SBNO2Q9Y2G9 1366 aa26.71■■□□□ 1.87
TRIM56-202ENST00000412507 RXRBP28702 533 aa26.71■■□□□ 1.87
TRIM56-202ENST00000412507 PHRF1Q9P1Y6 1649 aaKnown RBP26.7■■□□□ 1.86
TRIM56-202ENST00000412507 CABP1Q9NZU7 370 aa26.7■■□□□ 1.86
TRIM56-202ENST00000412507 TIMELESSQ9UNS1 1208 aa26.69■■□□□ 1.86
TRIM56-202ENST00000412507 NWD2Q9ULI1 1742 aa26.68■■□□□ 1.86
TRIM56-202ENST00000412507 BCL9LQ86UU0 1499 aa26.68■■□□□ 1.86
TRIM56-202ENST00000412507 SLIT2O94813 1529 aa26.65■■□□□ 1.86
TRIM56-202ENST00000412507 TRPC5Q9UL62 973 aaPredicted RBP26.65■■□□□ 1.86
TRIM56-202ENST00000412507 ATRNO75882 1429 aa26.65■■□□□ 1.86
TRIM56-202ENST00000412507 RBM6P78332 1123 aaKnown RBP26.64■■□□□ 1.86
TRIM56-202ENST00000412507 NUTM2GQ5VZR2 741 aa26.64■■□□□ 1.86
TRIM56-202ENST00000412507 CDK12Q9NYV4 1490 aaPredicted RBP26.63■■□□□ 1.85
TRIM56-202ENST00000412507 ATAD2Q6PL18 1390 aa26.63■■□□□ 1.85
TRIM56-202ENST00000412507 COL14A1Q05707 1796 aaKnown RBP26.63■■□□□ 1.85
TRIM56-202ENST00000412507 ST20-MTHFSA0A0A6YYL1 179 aa26.62■■□□□ 1.85
TRIM56-202ENST00000412507 USP6P35125 1406 aa26.62■■□□□ 1.85
TRIM56-202ENST00000412507 MON2Q7Z3U7 1717 aa26.62■■□□□ 1.85
TRIM56-202ENST00000412507 NRAPQ86VF7 1730 aa26.6■■□□□ 1.85
TRIM56-202ENST00000412507 ABTB2Q8N961 1025 aa26.6■■□□□ 1.85
TRIM56-202ENST00000412507 FAM83GA6ND36 823 aa26.59■■□□□ 1.85
TRIM56-202ENST00000412507 UNC5CLQ8IV45 518 aa26.59■■□□□ 1.85
TRIM56-202ENST00000412507 BRD4O60885 1362 aaPredicted RBP26.58■■□□□ 1.85
TRIM56-202ENST00000412507 RGS12O14924 1447 aa26.58■■□□□ 1.85
TRIM56-202ENST00000412507 PIK3C2AO00443 1686 aa26.58■■□□□ 1.85
TRIM56-202ENST00000412507 TESK2Q96S53 571 aa26.58■■□□□ 1.85
TRIM56-202ENST00000412507 NRKQ7Z2Y5 1582 aa26.58■■□□□ 1.85
TRIM56-202ENST00000412507 USP47Q96K76 1375 aa26.58■■□□□ 1.84
TRIM56-202ENST00000412507 SSH2Q76I76 1423 aa26.56■■□□□ 1.84
TRIM56-202ENST00000412507 GLI3P10071 1580 aa26.55■■□□□ 1.84
TRIM56-202ENST00000412507 ZNF692Q9BU19 519 aaPredicted RBP26.54■■□□□ 1.84
TRIM56-202ENST00000412507 CPSF1Q10570 1443 aaKnown RBP26.54■■□□□ 1.84
TRIM56-202ENST00000412507 NLRP13Q86W25 1043 aa26.52■■□□□ 1.84
TRIM56-202ENST00000412507 TMC1Q8TDI8 760 aa26.52■■□□□ 1.84
TRIM56-202ENST00000412507 GJD4Q96KN9 370 aaPredicted RBP26.52■■□□□ 1.84
TRIM56-202ENST00000412507 KTN1Q86UP2 1357 aaKnown RBP26.51■■□□□ 1.83
TRIM56-202ENST00000412507 KIAA0232Q92628 1395 aa26.51■■□□□ 1.83
TRIM56-202ENST00000412507 USP19O94966 1318 aa26.51■■□□□ 1.83
TRIM56-202ENST00000412507 PRDM11Q9NQV5 511 aa26.51■■□□□ 1.83
TRIM56-202ENST00000412507 BTG4Q9NY30 223 aa26.51■■□□□ 1.83
TRIM56-202ENST00000412507 BRWD3Q6RI45 1802 aa26.51■■□□□ 1.83
TRIM56-202ENST00000412507 CD163L1Q9NR16 1453 aa26.5■■□□□ 1.83
TRIM56-202ENST00000412507 TTC21BQ7Z4L5 1316 aa26.5■■□□□ 1.83
TRIM56-202ENST00000412507 ZC3H6P61129 1189 aaKnown RBP26.5■■□□□ 1.83
TRIM56-202ENST00000412507 NLRP6P59044 892 aa26.49■■□□□ 1.83
TRIM56-202ENST00000412507 PUS7Q96PZ0 661 aaKnown RBP26.49■■□□□ 1.83
TRIM56-202ENST00000412507 SLC12A5Q9H2X9 1139 aa26.49■■□□□ 1.83
TRIM56-202ENST00000412507 SLC24A1O60721 1099 aa26.48■■□□□ 1.83
TRIM56-202ENST00000412507 VPS72Q15906 364 aa26.48■■□□□ 1.83
TRIM56-202ENST00000412507 CHRNA2Q15822 529 aa26.47■■□□□ 1.83
TRIM56-202ENST00000412507 SLIT3O75094 1523 aa26.46■■□□□ 1.83
TRIM56-202ENST00000412507 CCDC9Q9Y3X0 531 aaKnown RBP26.46■■□□□ 1.83
TRIM56-202ENST00000412507 GCP02774 474 aa26.45■■□□□ 1.82
TRIM56-202ENST00000412507 LMO7Q8WWI1 1683 aa26.44■■□□□ 1.82
TRIM56-202ENST00000412507 TTC21AQ8NDW8 1320 aa26.44■■□□□ 1.82
TRIM56-202ENST00000412507 TMF1P82094 1093 aa26.44■■□□□ 1.82
TRIM56-202ENST00000412507 HDGFL2Q7Z4V5 671 aaPredicted RBP26.44■■□□□ 1.82
TRIM56-202ENST00000412507 USP54Q70EL1 1684 aa26.43■■□□□ 1.82
TRIM56-202ENST00000412507 RGPD5Q99666 1765 aa26.43■■□□□ 1.82
TRIM56-202ENST00000412507 CPDO75976 1380 aa26.42■■□□□ 1.82
TRIM56-202ENST00000412507 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.41■■□□□ 1.82
TRIM56-202ENST00000412507 TERF2IPQ9NYB0 399 aa26.41■■□□□ 1.82
TRIM56-202ENST00000412507 A0A1W2PP64 1363 aa26.41■■□□□ 1.82
TRIM56-202ENST00000412507 CAMTA1Q9Y6Y1 1673 aa26.4■■□□□ 1.82
TRIM56-202ENST00000412507 COL18A1P39060 1754 aa26.39■■□□□ 1.82
TRIM56-202ENST00000412507 NINLQ9Y2I6 1382 aa26.39■■□□□ 1.82
TRIM56-202ENST00000412507 UPF1Q92900 1129 aaKnown RBP eCLIP26.38■■□□□ 1.811e-10■■■■■ 32
TRIM56-202ENST00000412507 EDC4Q6P2E9 1401 aaKnown RBP26.38■■□□□ 1.81
TRIM56-202ENST00000412507 MYOM1P52179 1685 aa26.38■■□□□ 1.81
TRIM56-202ENST00000412507 ZBTB7CA1YPR0 619 aa26.37■■□□□ 1.81
TRIM56-202ENST00000412507 STRN4Q9NRL3 753 aa26.37■■□□□ 1.81
TRIM56-202ENST00000412507 ZRANB1Q9UGI0 708 aa26.37■■□□□ 1.81
TRIM56-202ENST00000412507 LTN1O94822 1766 aa26.36■■□□□ 1.81
TRIM56-202ENST00000412507 NME9Q86XW9 330 aa26.35■■□□□ 1.81
TRIM56-202ENST00000412507 SPATA31A5Q5VU36 1347 aa26.35■■□□□ 1.81
TRIM56-202ENST00000412507 SPATA31A7Q8IWB4 1347 aa26.35■■□□□ 1.81
TRIM56-202ENST00000412507 SOX12O15370 315 aa26.34■■□□□ 1.81
TRIM56-202ENST00000412507 SEPT12Q8IYM1 358 aa26.34■■□□□ 1.81
TRIM56-202ENST00000412507 NFAT5O94916 1531 aa26.34■■□□□ 1.81
TRIM56-202ENST00000412507 USP31Q70CQ4 1352 aa26.33■■□□□ 1.81
TRIM56-202ENST00000412507 ONECUT3O60422 494 aaPredicted RBP26.33■■□□□ 1.81
TRIM56-202ENST00000412507 CDCA8Q53HL2 280 aa26.33■■□□□ 1.81
TRIM56-202ENST00000412507 EVA1CP58658 441 aa26.32■■□□□ 1.8
TRIM56-202ENST00000412507 FAM98CQ17RN3 349 aaKnown RBP26.32■■□□□ 1.8
TRIM56-202ENST00000412507 KCNH5Q8NCM2 988 aa26.32■■□□□ 1.8
TRIM56-202ENST00000412507 ANKRD36BQ8N2N9 1353 aa26.31■■□□□ 1.8
TRIM56-202ENST00000412507 EIF4G2P78344 907 aaKnown RBP eCLIP26.3■■□□□ 1.8
TRIM56-202ENST00000412507 THSD7AQ9UPZ6 1657 aa26.3■■□□□ 1.8
TRIM56-202ENST00000412507 AATKQ6ZMQ8 1374 aa26.3■■□□□ 1.8
TRIM56-202ENST00000412507 KIF20BQ96Q89 1820 aa26.3■■□□□ 1.8
TRIM56-202ENST00000412507 COL5A2P05997 1499 aaPredicted RBP26.3■■□□□ 1.8
TRIM56-202ENST00000412507 A0A0G2JS52 829 aa26.29■■□□□ 1.8
TRIM56-202ENST00000412507 HSPA5P11021 654 aaKnown RBP26.29■■□□□ 1.8
TRIM56-202ENST00000412507 MYT1Q01538 1121 aa26.29■■□□□ 1.8
TRIM56-202ENST00000412507 SPATA31A1Q5TZJ5 1347 aa26.29■■□□□ 1.8
TRIM56-202ENST00000412507 ARHGEF25Q86VW2 580 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms