RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 KCNH8Q96L42 1107 aa15.27■□□□□ 0.03
COL6A3-206ENST00000409809 ERICH4A6NGS2 130 aa15.27■□□□□ 0.03
COL6A3-206ENST00000409809 MPHOSPH9Q99550 1183 aa15.27■□□□□ 0.03
COL6A3-206ENST00000409809 SPECC1LQ69YQ0 1117 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 WASHC2AQ641Q2 1341 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 WASHC2CQ9Y4E1 1318 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 PAIP2Q9BPZ3 127 aaKnown RBP15.26■□□□□ 0.03
COL6A3-206ENST00000409809 WDR66Q8TBY9 1149 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 V9GYY5 206 aaPredicted RBP15.26■□□□□ 0.03
COL6A3-206ENST00000409809 DHX57Q6P158 1386 aaKnown RBP15.26■□□□□ 0.03
COL6A3-206ENST00000409809 CCDC7Q96M83 1385 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 DNAAF4Q8WXU2 420 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 STAC3Q96MF2 364 aa15.26■□□□□ 0.03
COL6A3-206ENST00000409809 BMS1Q14692 1282 aaKnown RBP15.25■□□□□ 0.03
COL6A3-206ENST00000409809 KRT85P78386 507 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 PDE3AQ14432 1141 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 GSDMDP57764 484 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 PTPN14Q15678 1187 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 CCDC88BA6NC98 1476 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 SENP3-EIF4A1A0A087X0R7 540 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 TNMDQ9H2S6 317 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 FAM114A1Q8IWE2 563 aa15.25■□□□□ 0.03
COL6A3-206ENST00000409809 SMG6Q86US8 1419 aaKnown RBP15.25■□□□□ 0.03
COL6A3-206ENST00000409809 BBXQ8WY36 941 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-206ENST00000409809 MCM4P33991 863 aa15.24■□□□□ 0.03
COL6A3-206ENST00000409809 DHX29Q7Z478 1369 aaKnown RBP15.24■□□□□ 0.03
COL6A3-206ENST00000409809 CLCN1P35523 988 aa15.24■□□□□ 0.03
COL6A3-206ENST00000409809 SMC1AQ14683 1233 aaKnown RBP15.24■□□□□ 0.03
COL6A3-206ENST00000409809 NOL10Q9BSC4 688 aaKnown RBP15.24■□□□□ 0.03
COL6A3-206ENST00000409809 MNAT1P51948 309 aa15.24■□□□□ 0.03
COL6A3-206ENST00000409809 FYB1O15117 783 aa15.23■□□□□ 0.03
COL6A3-206ENST00000409809 TUBBP07437 444 aa15.23■□□□□ 0.03
COL6A3-206ENST00000409809 CENPHQ9H3R5 247 aa15.23■□□□□ 0.03
COL6A3-206ENST00000409809 SEPT6Q14141 434 aa15.23■□□□□ 0.03
COL6A3-206ENST00000409809 CHMP3Q9Y3E7 222 aa15.23■□□□□ 0.03
COL6A3-206ENST00000409809 K7ELQ4 463 aaPredicted RBP15.23■□□□□ 0.03
COL6A3-206ENST00000409809 STAMBPO95630 424 aa15.23■□□□□ 0.03
COL6A3-206ENST00000409809 POLA1P09884 1462 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-206ENST00000409809 GCOM1H8Y6P7 765 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-206ENST00000409809 MYZAPP0CAP1 466 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 SFPQP23246 707 aaKnown RBP eCLIP15.22■□□□□ 0.03
COL6A3-206ENST00000409809 RNF214Q8ND24 703 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 A6NNZ2 444 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 TUBB8Q3ZCM7 444 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 RAPGEF2Q9Y4G8 1499 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 CLGNO14967 610 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 PKD2Q13563 968 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 SMAP1Q8IYB5 467 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-206ENST00000409809 DDX12PQ92771 950 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 GCC1Q96CN9 775 aa15.22■□□□□ 0.03
COL6A3-206ENST00000409809 IFIT2P09913 472 aaKnown RBP15.22■□□□□ 0.03
COL6A3-206ENST00000409809 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.22■□□□□ 0.03
COL6A3-206ENST00000409809 SERPINC1P01008 464 aa15.21■□□□□ 0.03
COL6A3-206ENST00000409809 RALYLQ86SE5 291 aaKnown RBP15.21■□□□□ 0.03
COL6A3-206ENST00000409809 CNTROBQ8N137 903 aa15.21■□□□□ 0.03
COL6A3-206ENST00000409809 NUP155O75694 1391 aa15.21■□□□□ 0.03
COL6A3-206ENST00000409809 SLC4A10Q6U841 1118 aa15.2■□□□□ 0.02
COL6A3-206ENST00000409809 TMCO5BA8MYB1 307 aa15.2■□□□□ 0.02
COL6A3-206ENST00000409809 MAP2K1Q02750 393 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-206ENST00000409809 SYCP1Q15431 976 aa15.2■□□□□ 0.02
COL6A3-206ENST00000409809 WIZO95785 1651 aa15.2■□□□□ 0.02
COL6A3-206ENST00000409809 SART3Q15020 963 aaKnown RBP15.2■□□□□ 0.02
COL6A3-206ENST00000409809 CCDC175P0C221 793 aa15.2■□□□□ 0.02
COL6A3-206ENST00000409809 ARHGAP29Q52LW3 1261 aa15.2■□□□□ 0.02
COL6A3-206ENST00000409809 KIF5CO60282 957 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 C6orf163Q5TEZ5 329 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 PRPF40AO75400 957 aaKnown RBP15.19■□□□□ 0.02
COL6A3-206ENST00000409809 VPS53Q5VIR6 699 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 GPATCH11Q8N954 259 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 TOMM22Q9NS69 142 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 SRRTQ9BXP5 876 aaKnown RBP15.19■□□□□ 0.02
COL6A3-206ENST00000409809 EHBP1Q8NDI1 1231 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 CTAGE5O15320 804 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 HSPA4P34932 840 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 MROH2BQ7Z745 1585 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 LIG1P18858 919 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 TDO2P48775 406 aa15.19■□□□□ 0.02
COL6A3-206ENST00000409809 CCDC94Q9BW85 323 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-206ENST00000409809 SOGA1O94964 1423 aa15.18■□□□□ 0.02
COL6A3-206ENST00000409809 ANKS4BQ8N8V4 417 aa15.18■□□□□ 0.02
COL6A3-206ENST00000409809 A0A1B0GUA9 196 aa15.18■□□□□ 0.02
COL6A3-206ENST00000409809 HMGB1P1B2RPK0 211 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-206ENST00000409809 CCDC43Q96MW1 224 aaKnown RBP15.18■□□□□ 0.02
COL6A3-206ENST00000409809 COG6Q9Y2V7 657 aa15.18■□□□□ 0.02
COL6A3-206ENST00000409809 FOXD4L6Q3SYB3 417 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-206ENST00000409809 FOXD4L3Q6VB84 417 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-206ENST00000409809 EFCAB2Q5VUJ9 269 aa15.17■□□□□ 0.02
COL6A3-206ENST00000409809 ZNF397Q8NF99 534 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-206ENST00000409809 CCDC171Q6TFL3 1326 aa15.17■□□□□ 0.02
COL6A3-206ENST00000409809 EPB41L2O43491 1005 aaKnown RBP15.17■□□□□ 0.02
COL6A3-206ENST00000409809 NAA15Q9BXJ9 866 aaKnown RBP15.17■□□□□ 0.02
COL6A3-206ENST00000409809 ERC1Q8IUD2 1116 aa15.17■□□□□ 0.02
COL6A3-206ENST00000409809 ANKRD18BA2A2Z9 1011 aa15.17■□□□□ 0.02
COL6A3-206ENST00000409809 CCDC183Q5T5S1 534 aa15.17■□□□□ 0.02
COL6A3-206ENST00000409809 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL6A3-206ENST00000409809 MAP3K11Q16584 847 aa15.16■□□□□ 0.02
COL6A3-206ENST00000409809 SRCIN1Q9C0H9 1055 aa15.16■□□□□ 0.02
COL6A3-206ENST00000409809 PPP4R3BQ5MIZ7 849 aa15.16■□□□□ 0.02
COL6A3-206ENST00000409809 UVSSAQ2YD98 709 aa15.16■□□□□ 0.02
COL6A3-206ENST00000409809 DNAJC21Q5F1R6 531 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms