RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 PIK3C2GO75747 1445 aa13.73□□□□□ -0.21
NIF3L1-204ENST00000409357 FSD2A1L4K1 749 aa13.72□□□□□ -0.21
NIF3L1-204ENST00000409357 CENPQQ7L2Z9 268 aaPredicted RBP13.72□□□□□ -0.21
NIF3L1-204ENST00000409357 U3KPZ7 1027 aaPredicted RBP13.72□□□□□ -0.21
NIF3L1-204ENST00000409357 PHLPP1O60346 1717 aa13.72□□□□□ -0.21
NIF3L1-204ENST00000409357 PTCH1Q13635 1447 aa13.72□□□□□ -0.21
NIF3L1-204ENST00000409357 VIRMAQ69YN4 1812 aaKnown RBP13.71□□□□□ -0.21
NIF3L1-204ENST00000409357 ILDR2Q71H61 639 aa13.71□□□□□ -0.21
NIF3L1-204ENST00000409357 C19orf44Q9H6X5 657 aa13.71□□□□□ -0.21
NIF3L1-204ENST00000409357 ADGRL3Q9HAR2 1447 aa13.7□□□□□ -0.22
NIF3L1-204ENST00000409357 RALBP1Q15311 655 aa13.7□□□□□ -0.22
NIF3L1-204ENST00000409357 L3MBTL2Q969R5 705 aa13.7□□□□□ -0.22
NIF3L1-204ENST00000409357 NRXN1Q9ULB1 1477 aa13.7□□□□□ -0.22
NIF3L1-204ENST00000409357 PRAG1Q86YV5 1406 aa13.7□□□□□ -0.22
NIF3L1-204ENST00000409357 COL16A1Q07092 1604 aaPredicted RBP13.69□□□□□ -0.22
NIF3L1-204ENST00000409357 MST1RQ04912 1400 aa13.69□□□□□ -0.22
NIF3L1-204ENST00000409357 TERF1P54274 439 aa13.69□□□□□ -0.22
NIF3L1-204ENST00000409357 TMEM132EQ6IEE7 984 aa13.69□□□□□ -0.22
NIF3L1-204ENST00000409357 MYOM2P54296 1465 aa13.69□□□□□ -0.22
NIF3L1-204ENST00000409357 DCCP43146 1447 aa13.68□□□□□ -0.22
NIF3L1-204ENST00000409357 ATF3P18847 181 aa13.68□□□□□ -0.22
NIF3L1-204ENST00000409357 C8orf34Q49A92 452 aa13.68□□□□□ -0.22
NIF3L1-204ENST00000409357 CADPS2Q86UW7 1296 aa13.68□□□□□ -0.22
NIF3L1-204ENST00000409357 NAP1L5Q96NT1 182 aaPredicted RBP13.68□□□□□ -0.22
NIF3L1-204ENST00000409357 KNDC1Q76NI1 1749 aa13.67□□□□□ -0.22
NIF3L1-204ENST00000409357 TMC1Q8TDI8 760 aa13.67□□□□□ -0.22
NIF3L1-204ENST00000409357 MYBBP1AQ9BQG0 1328 aaKnown RBP13.66□□□□□ -0.22
NIF3L1-204ENST00000409357 AHDC1Q5TGY3 1603 aaPredicted RBP13.66□□□□□ -0.22
NIF3L1-204ENST00000409357 BRINP3Q76B58 766 aa13.66□□□□□ -0.22
NIF3L1-204ENST00000409357 MAP7D2Q96T17 732 aa13.66□□□□□ -0.22
NIF3L1-204ENST00000409357 STK26Q9P289 416 aa13.66□□□□□ -0.22
NIF3L1-204ENST00000409357 PLEKHH1Q9ULM0 1364 aa13.65□□□□□ -0.22
NIF3L1-204ENST00000409357 TECPR2O15040 1411 aa13.65□□□□□ -0.22
NIF3L1-204ENST00000409357 LAMC1P11047 1609 aa13.65□□□□□ -0.22
NIF3L1-204ENST00000409357 NHSL1Q5SYE7 1610 aa13.65□□□□□ -0.22
NIF3L1-204ENST00000409357 BECN1Q14457 450 aa13.64□□□□□ -0.23
NIF3L1-204ENST00000409357 CFAP70Q5T0N1 1121 aa13.64□□□□□ -0.23
NIF3L1-204ENST00000409357 YTHDC2Q9H6S0 1430 aaKnown RBP13.64□□□□□ -0.23
NIF3L1-204ENST00000409357 WAPLQ7Z5K2 1190 aa13.63□□□□□ -0.23
NIF3L1-204ENST00000409357 GOLGA6L3A6NEY3 463 aa13.63□□□□□ -0.23
NIF3L1-204ENST00000409357 XRCC6P12956 609 aaKnown RBP eCLIP13.63□□□□□ -0.23
NIF3L1-204ENST00000409357 NBPF8Q3BBV2 869 aa13.63□□□□□ -0.23
NIF3L1-204ENST00000409357 DDX17Q92841 729 aaKnown RBP13.63□□□□□ -0.23
NIF3L1-204ENST00000409357 ADGRB1O14514 1584 aa13.62□□□□□ -0.23
NIF3L1-204ENST00000409357 CDC42BPGQ6DT37 1551 aa13.62□□□□□ -0.23
NIF3L1-204ENST00000409357 MRE11P49959 708 aa13.62□□□□□ -0.23
NIF3L1-204ENST00000409357 SAMD1Q6SPF0 538 aaPredicted RBP13.62□□□□□ -0.23
NIF3L1-204ENST00000409357 C14orf93Q9H972 538 aaKnown RBP13.62□□□□□ -0.23
NIF3L1-204ENST00000409357 POGKQ9P215 609 aa13.62□□□□□ -0.23
NIF3L1-204ENST00000409357 C1orf167Q5SNV9 1468 aa13.61□□□□□ -0.23
NIF3L1-204ENST00000409357 PRDM4Q9UKN5 801 aa13.61□□□□□ -0.23
NIF3L1-204ENST00000409357 KDM2AQ9Y2K7 1162 aa13.61□□□□□ -0.23
NIF3L1-204ENST00000409357 ABCC11Q96J66 1382 aa13.61□□□□□ -0.23
NIF3L1-204ENST00000409357 ANTXR1Q9H6X2 564 aa13.6□□□□□ -0.23
NIF3L1-204ENST00000409357 SHPRHQ149N8 1683 aa13.6□□□□□ -0.23
NIF3L1-204ENST00000409357 SLC4A3P48751 1232 aa13.59□□□□□ -0.23
NIF3L1-204ENST00000409357 BLMP54132 1417 aaPredicted RBP13.59□□□□□ -0.23
NIF3L1-204ENST00000409357 LRP6O75581 1613 aa13.59□□□□□ -0.23
NIF3L1-204ENST00000409357 PLEKHG5O94827 1062 aa13.59□□□□□ -0.23
NIF3L1-204ENST00000409357 ORAI2Q96SN7 254 aa13.59□□□□□ -0.23
NIF3L1-204ENST00000409357 JCADQ9P266 1359 aa13.58□□□□□ -0.24
NIF3L1-204ENST00000409357 CRBNQ96SW2 442 aa13.58□□□□□ -0.24
NIF3L1-204ENST00000409357 RGS17Q9UGC6 210 aaPredicted RBP13.58□□□□□ -0.24
NIF3L1-204ENST00000409357 RGPD8O14715 1765 aaPredicted RBP13.58□□□□□ -0.24
NIF3L1-204ENST00000409357 FMN2Q9NZ56 1722 aa13.58□□□□□ -0.24
NIF3L1-204ENST00000409357 EIF3AQ14152 1382 aaKnown RBP13.57□□□□□ -0.24
NIF3L1-204ENST00000409357 ESPNB1AK53 854 aa13.57□□□□□ -0.24
NIF3L1-204ENST00000409357 NUTM2FA1L443 756 aa13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 AAMPQ13685 434 aa13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 NLRP13Q86W25 1043 aa13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 PARD3Q8TEW0 1356 aa13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 USP47Q96K76 1375 aa13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 USP19O94966 1318 aa13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 SAFB2Q14151 953 aaKnown RBP eCLIP13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 MTERF4Q7Z6M4 381 aaKnown RBP13.56□□□□□ -0.24
NIF3L1-204ENST00000409357 ARHGEF28Q8N1W1 1705 aaKnown RBP13.55□□□□□ -0.24
NIF3L1-204ENST00000409357 DLC1Q96QB1 1528 aa13.54□□□□□ -0.24
NIF3L1-204ENST00000409357 PRAM1Q96QH2 718 aa13.54□□□□□ -0.24
NIF3L1-204ENST00000409357 RALGAPBQ86X10 1494 aa13.54□□□□□ -0.24
NIF3L1-204ENST00000409357 RBM10P98175 930 aaKnown RBP13.53□□□□□ -0.24
NIF3L1-204ENST00000409357 USP32Q8NFA0 1604 aa13.53□□□□□ -0.24
NIF3L1-204ENST00000409357 FGD1P98174 961 aa13.53□□□□□ -0.24
NIF3L1-204ENST00000409357 SMAP1Q8IYB5 467 aaPredicted RBP13.53□□□□□ -0.24
NIF3L1-204ENST00000409357 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.53□□□□□ -0.24
NIF3L1-204ENST00000409357 TRAK1Q9UPV9 953 aa13.53□□□□□ -0.24
NIF3L1-204ENST00000409357 MYH16Q9H6N6 1097 aa13.52□□□□□ -0.25
NIF3L1-204ENST00000409357 MAPK8IP3Q9UPT6 1336 aa13.51□□□□□ -0.25
NIF3L1-204ENST00000409357 ADGRB2O60241 1585 aa13.51□□□□□ -0.25
NIF3L1-204ENST00000409357 ESCO1Q5FWF5 840 aa13.51□□□□□ -0.25
NIF3L1-204ENST00000409357 KIAA1210Q9ULL0 1709 aa13.51□□□□□ -0.25
NIF3L1-204ENST00000409357 PXDNQ92626 1479 aa13.51□□□□□ -0.25
NIF3L1-204ENST00000409357 MCM4P33991 863 aa13.5□□□□□ -0.25
NIF3L1-204ENST00000409357 XPCQ01831 940 aaPredicted RBP13.5□□□□□ -0.25
NIF3L1-204ENST00000409357 PNPLA6Q8IY17 1366 aa13.5□□□□□ -0.25
NIF3L1-204ENST00000409357 SIRT1Q96EB6 747 aa13.5□□□□□ -0.25
NIF3L1-204ENST00000409357 SOS2Q07890 1332 aaPredicted RBP13.49□□□□□ -0.25
NIF3L1-204ENST00000409357 SPATA31A6Q5VVP1 1343 aa13.49□□□□□ -0.25
NIF3L1-204ENST00000409357 NUTM2BA6NNL0 878 aaPredicted RBP13.49□□□□□ -0.25
NIF3L1-204ENST00000409357 NUTM2EB1AL46 878 aaPredicted RBP13.49□□□□□ -0.25
NIF3L1-204ENST00000409357 NCLP19338 710 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms