RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PER1O15534 1290 aaPredicted RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 ZNF445P59923 1031 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 BMP2KLQ5H9B9 411 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 FILIP1Q7Z7B0 1213 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 ZGPATQ8N5A5 531 aaKnown RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 BCL2L12Q9HB09 334 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 HSP90B1P14625 803 aaKnown RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 KRT222Q8N1A0 295 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 JARID2Q92833 1246 aaPredicted RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 ZFP91Q96JP5 570 aaPredicted RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 UPF3BQ9BZI7 483 aaKnown RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 ESF1Q9H501 851 aaKnown RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 WDR33Q9C0J8 1336 aaKnown RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 RBM25P49756 843 aaKnown RBP11.18□□□□□ -0.62
COL28A1-201ENST00000399429 TAF7LQ5H9L4 462 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 PLPPR3Q6T4P5 718 aa11.18□□□□□ -0.62
COL28A1-201ENST00000399429 RIOK3O14730 519 aaKnown RBP11.17□□□□□ -0.62
COL28A1-201ENST00000399429 MCM2P49736 904 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 DMRT2Q9Y5R5 561 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 ERC2O15083 957 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 CAMK4Q16566 473 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 DISP3Q9P2K9 1392 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 TPM4P67936 248 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 OGFRQ9NZT2 677 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 PRDM4Q9UKN5 801 aa11.17□□□□□ -0.62
COL28A1-201ENST00000399429 CCDC183Q5T5S1 534 aa11.16□□□□□ -0.62
COL28A1-201ENST00000399429 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
COL28A1-201ENST00000399429 TSPYL1Q9H0U9 437 aa11.16□□□□□ -0.62
COL28A1-201ENST00000399429 TRMT1Q9NXH9 659 aaKnown RBP11.16□□□□□ -0.62
COL28A1-201ENST00000399429 SOX12O15370 315 aa11.16□□□□□ -0.62
COL28A1-201ENST00000399429 FEZ1Q99689 392 aa11.16□□□□□ -0.62
COL28A1-201ENST00000399429 NOL10Q9BSC4 688 aaKnown RBP11.16□□□□□ -0.62
COL28A1-201ENST00000399429 API5Q9BZZ5 524 aaKnown RBP11.16□□□□□ -0.62
COL28A1-201ENST00000399429 DAPK1P53355 1430 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 PTPN14Q15678 1187 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 GIMAP6Q6P9H5 292 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 CERS3Q8IU89 383 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 GPATCH11Q8N954 259 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 PIBF1Q8WXW3 757 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 CHAMP1Q96JM3 812 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 H3BQV1 296 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 IFFO2Q5TF58 517 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 LMBRD1Q9NUN5 540 aa11.15□□□□□ -0.62
COL28A1-201ENST00000399429 TMEM63CQ9P1W3 806 aa11.15□□□□□ -0.63
COL28A1-201ENST00000399429 SPATA31E1Q6ZUB1 1445 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 RAD54L2Q9Y4B4 1467 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 LEKR1Q6ZMV7 388 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 TNMDQ9H2S6 317 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 ZBTB22O15209 634 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 NUCB1Q02818 461 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 HDAC1Q13547 482 aaPredicted RBP11.14□□□□□ -0.63
COL28A1-201ENST00000399429 NUTM2DQ5VT03 806 aaPredicted RBP11.14□□□□□ -0.63
COL28A1-201ENST00000399429 FMNL2Q96PY5 1086 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 SLC12A5Q9H2X9 1139 aa11.14□□□□□ -0.63
COL28A1-201ENST00000399429 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.13□□□□□ -0.63
COL28A1-201ENST00000399429 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.13□□□□□ -0.63
COL28A1-201ENST00000399429 FAM177A1Q8N128 213 aaPredicted RBP11.13□□□□□ -0.63
COL28A1-201ENST00000399429 PKP1Q13835 747 aa11.13□□□□□ -0.63
COL28A1-201ENST00000399429 IPO4Q8TEX9 1081 aaKnown RBP11.13□□□□□ -0.63
COL28A1-201ENST00000399429 AK7Q96M32 723 aa11.13□□□□□ -0.63
COL28A1-201ENST00000399429 LARP6Q9BRS8 491 aaKnown RBP11.13□□□□□ -0.63
COL28A1-201ENST00000399429 SETQ01105 290 aaPredicted RBP11.12□□□□□ -0.63
COL28A1-201ENST00000399429 SF3A1Q15459 793 aaKnown RBP11.12□□□□□ -0.63
COL28A1-201ENST00000399429 UVSSAQ2YD98 709 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 CCDC186Q7Z3E2 898 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 SMARCA5O60264 1052 aaPredicted RBP11.12□□□□□ -0.63
COL28A1-201ENST00000399429 HMOX1P09601 288 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 CKAP2LQ8IYA6 745 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 GGNBP2Q9H3C7 697 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 FOSBP53539 338 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 TMCO3Q6UWJ1 677 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.12□□□□□ -0.63
COL28A1-201ENST00000399429 UBXN4Q92575 508 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 EHBP1L1Q8N3D4 1523 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 DIAPH1O60610 1272 aaKnown RBP11.12□□□□□ -0.63
COL28A1-201ENST00000399429 DEF6Q9H4E7 631 aa11.12□□□□□ -0.63
COL28A1-201ENST00000399429 CD2BP2O95400 341 aaKnown RBP11.11□□□□□ -0.63
COL28A1-201ENST00000399429 ATP2B3Q16720 1220 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 USP48Q86UV5 1035 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 FERMT3Q86UX7 667 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 STAC3Q96MF2 364 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 NUP62CLQ9H1M0 184 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 CEBPZQ03701 1054 aaKnown RBP11.11□□□□□ -0.63
COL28A1-201ENST00000399429 HSP90B2PQ58FF3 399 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 KIF18AQ8NI77 898 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 TMX3Q96JJ7 454 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 TMX1Q9H3N1 280 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 NPM1P06748 294 aaKnown RBP eCLIP11.11□□□□□ -0.63
COL28A1-201ENST00000399429 CT47B1P0C2W7 299 aaPredicted RBP11.11□□□□□ -0.63
COL28A1-201ENST00000399429 CFAP70Q5T0N1 1121 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 TOMM22Q9NS69 142 aa11.11□□□□□ -0.63
COL28A1-201ENST00000399429 PTGS1P23219 599 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 MAP3K11Q16584 847 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 CEP135Q66GS9 1140 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 CADPSQ9ULU8 1353 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 ZSCAN20P17040 1043 aaPredicted RBP11.1□□□□□ -0.63
COL28A1-201ENST00000399429 GTF2A1P52655 376 aaPredicted RBP11.1□□□□□ -0.63
COL28A1-201ENST00000399429 CLIP2Q9UDT6 1046 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 SUPT6HQ7KZ85 1726 aaKnown RBP11.1□□□□□ -0.63
COL28A1-201ENST00000399429 SMC2O95347 1197 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms