RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 GPRASP1Q5JY77 1395 aa23.88■■□□□ 1.41
CUX2-202ENST00000397643 SPATA31A5Q5VU36 1347 aa23.87■■□□□ 1.41
CUX2-202ENST00000397643 SPATA31A7Q8IWB4 1347 aa23.87■■□□□ 1.41
CUX2-202ENST00000397643 HRCP23327 699 aa23.87■■□□□ 1.41
CUX2-202ENST00000397643 TRAK1Q9UPV9 953 aa23.86■■□□□ 1.41
CUX2-202ENST00000397643 TNS1Q9HBL0 1735 aaKnown RBP23.86■■□□□ 1.41
CUX2-202ENST00000397643 EIF3AQ14152 1382 aaKnown RBP23.86■■□□□ 1.41
CUX2-202ENST00000397643 MINK1Q8N4C8 1332 aaPredicted RBP23.85■■□□□ 1.41
CUX2-202ENST00000397643 DISP2A7MBM2 1401 aa23.85■■□□□ 1.41
CUX2-202ENST00000397643 FAM182BQ5T319 152 aa23.84■■□□□ 1.41
CUX2-202ENST00000397643 WASLO00401 505 aaPredicted RBP23.83■■□□□ 1.41
CUX2-202ENST00000397643 EN1Q05925 392 aaPredicted RBP23.83■■□□□ 1.41
CUX2-202ENST00000397643 ATP7BP35670 1465 aa23.81■■□□□ 1.4
CUX2-202ENST00000397643 RAB3GAP2Q9H2M9 1393 aa23.79■■□□□ 1.4
CUX2-202ENST00000397643 PHRF1Q9P1Y6 1649 aaKnown RBP23.79■■□□□ 1.4
CUX2-202ENST00000397643 ARHGEF28Q8N1W1 1705 aaKnown RBP23.79■■□□□ 1.4
CUX2-202ENST00000397643 PRDM11Q9NQV5 511 aa23.78■■□□□ 1.4
CUX2-202ENST00000397643 ITSN1Q15811 1721 aa23.78■■□□□ 1.4
CUX2-202ENST00000397643 NGDNQ8NEJ9 315 aaKnown RBP23.77■■□□□ 1.4
CUX2-202ENST00000397643 SPATA31A1Q5TZJ5 1347 aa23.77■■□□□ 1.4
CUX2-202ENST00000397643 KIAA0232Q92628 1395 aa23.77■■□□□ 1.4
CUX2-202ENST00000397643 PAK3O75914 559 aaPredicted RBP23.75■■□□□ 1.39
CUX2-202ENST00000397643 R3HDM1Q15032 1099 aaKnown RBP23.75■■□□□ 1.39
CUX2-202ENST00000397643 EZH2Q15910 746 aaKnown RBP23.73■■□□□ 1.39
CUX2-202ENST00000397643 DCAF11Q8TEB1 546 aa23.73■■□□□ 1.39
CUX2-202ENST00000397643 KDM2AQ9Y2K7 1162 aa23.73■■□□□ 1.39
CUX2-202ENST00000397643 TOPAZ1Q8N9V7 1692 aa23.73■■□□□ 1.39
CUX2-202ENST00000397643 CHRNA2Q15822 529 aa23.72■■□□□ 1.39
CUX2-202ENST00000397643 NUDT16Q96DE0 195 aaKnown RBP23.71■■□□□ 1.39
CUX2-202ENST00000397643 CAMKK2Q96RR4 588 aa23.71■■□□□ 1.39
CUX2-202ENST00000397643 NRKQ7Z2Y5 1582 aa23.69■■□□□ 1.38
CUX2-202ENST00000397643 POLR3AO14802 1390 aaPredicted RBP23.69■■□□□ 1.38
CUX2-202ENST00000397643 RREB1Q92766 1687 aa23.68■■□□□ 1.38
CUX2-202ENST00000397643 TRIM37O94972 964 aa23.68■■□□□ 1.38
CUX2-202ENST00000397643 FAM196AQ6ZSG2 479 aa23.68■■□□□ 1.38
CUX2-202ENST00000397643 STAC3Q96MF2 364 aa23.68■■□□□ 1.38
CUX2-202ENST00000397643 STRN4Q9NRL3 753 aa23.68■■□□□ 1.38
CUX2-202ENST00000397643 SSH2Q76I76 1423 aa23.67■■□□□ 1.38
CUX2-202ENST00000397643 LMO7Q8WWI1 1683 aa23.67■■□□□ 1.38
CUX2-202ENST00000397643 PARD3Q8TEW0 1356 aa23.66■■□□□ 1.38
CUX2-202ENST00000397643 ZC3H6P61129 1189 aaKnown RBP23.66■■□□□ 1.38
CUX2-202ENST00000397643 CAMTA1Q9Y6Y1 1673 aa23.66■■□□□ 1.38
CUX2-202ENST00000397643 NUTM2GQ5VZR2 741 aa23.65■■□□□ 1.38
CUX2-202ENST00000397643 NUP188Q5SRE5 1749 aa23.64■■□□□ 1.38
CUX2-202ENST00000397643 BARGINQ6ZT62 677 aa23.64■■□□□ 1.37
CUX2-202ENST00000397643 CDK19Q9BWU1 502 aa23.63■■□□□ 1.37
CUX2-202ENST00000397643 ACEP12821 1306 aa23.62■■□□□ 1.37
CUX2-202ENST00000397643 CPDO75976 1380 aa23.62■■□□□ 1.37
CUX2-202ENST00000397643 USP19O94966 1318 aa23.61■■□□□ 1.37
CUX2-202ENST00000397643 APBA3O96018 575 aa23.61■■□□□ 1.37
CUX2-202ENST00000397643 NBPF8Q3BBV2 869 aa23.61■■□□□ 1.37
CUX2-202ENST00000397643 USP35Q9P2H5 1018 aa23.61■■□□□ 1.37
CUX2-202ENST00000397643 PLEKHG3A1L390 1219 aa23.6■■□□□ 1.37
CUX2-202ENST00000397643 LARP1Q6PKG0 1096 aaKnown RBP23.6■■□□□ 1.37
CUX2-202ENST00000397643 CCDC61Q9Y6R9 512 aa23.6■■□□□ 1.37
CUX2-202ENST00000397643 KIAA1210Q9ULL0 1709 aa23.58■■□□□ 1.37
CUX2-202ENST00000397643 PARP4Q9UKK3 1724 aaKnown RBP23.57■■□□□ 1.36
CUX2-202ENST00000397643 EVA1CP58658 441 aa23.56■■□□□ 1.36
CUX2-202ENST00000397643 PDE3BQ13370 1112 aa23.56■■□□□ 1.36
CUX2-202ENST00000397643 TCP11L2Q8N4U5 519 aa23.56■■□□□ 1.36
CUX2-202ENST00000397643 COL5A2P05997 1499 aaPredicted RBP23.56■■□□□ 1.36
CUX2-202ENST00000397643 ABTB2Q8N961 1025 aa23.55■■□□□ 1.36
CUX2-202ENST00000397643 PEAK1Q9H792 1746 aa23.53■■□□□ 1.36
CUX2-202ENST00000397643 THRAP3Q9Y2W1 955 aaKnown RBP23.52■■□□□ 1.36
CUX2-202ENST00000397643 GCP02774 474 aa23.51■■□□□ 1.35
CUX2-202ENST00000397643 PPIP5K1Q6PFW1 1433 aa23.5■■□□□ 1.35
CUX2-202ENST00000397643 NBPF1Q3BBV0 1214 aa23.49■■□□□ 1.35
CUX2-202ENST00000397643 LRRC37A3O60309 1634 aa23.48■■□□□ 1.35
CUX2-202ENST00000397643 RGPD3A6NKT7 1758 aaPredicted RBP23.48■■□□□ 1.35
CUX2-202ENST00000397643 RGPD4Q7Z3J3 1758 aa23.48■■□□□ 1.35
CUX2-202ENST00000397643 NLRP13Q86W25 1043 aa23.48■■□□□ 1.35
CUX2-202ENST00000397643 CRB1P82279 1406 aa23.48■■□□□ 1.35
CUX2-202ENST00000397643 SLIT3O75094 1523 aa23.48■■□□□ 1.35
CUX2-202ENST00000397643 NBPF14Q5TI25 921 aa23.47■■□□□ 1.35
CUX2-202ENST00000397643 OVOS2A0A0G2JMS6 1433 aa23.46■■□□□ 1.35
CUX2-202ENST00000397643 OVOS2A0A0J9YW53 1432 aa23.46■■□□□ 1.35
CUX2-202ENST00000397643 BRD4O60885 1362 aaPredicted RBP23.46■■□□□ 1.35
CUX2-202ENST00000397643 OVOS2Q6IE36 1432 aa23.46■■□□□ 1.35
CUX2-202ENST00000397643 SBF2Q86WG5 1849 aa23.45■■□□□ 1.34
CUX2-202ENST00000397643 USP6P35125 1406 aa23.44■■□□□ 1.34
CUX2-202ENST00000397643 CABP2Q9NPB3 220 aa23.44■■□□□ 1.34
CUX2-202ENST00000397643 COL18A1P39060 1754 aa23.44■■□□□ 1.34
CUX2-202ENST00000397643 AATKQ6ZMQ8 1374 aa23.43■■□□□ 1.34
CUX2-202ENST00000397643 CENPJQ9HC77 1338 aaPredicted RBP23.43■■□□□ 1.34
CUX2-202ENST00000397643 SRPK2P78362 688 aaKnown RBP23.43■■□□□ 1.34
CUX2-202ENST00000397643 QRICH2Q9H0J4 1663 aa23.43■■□□□ 1.34
CUX2-202ENST00000397643 PIK3C2AO00443 1686 aa23.42■■□□□ 1.34
CUX2-202ENST00000397643 SPON1Q9HCB6 807 aa23.42■■□□□ 1.34
CUX2-202ENST00000397643 WNK3Q9BYP7 1800 aa23.42■■□□□ 1.34
CUX2-202ENST00000397643 C11orf95C9JLR9 678 aaPredicted RBP23.41■■□□□ 1.34
CUX2-202ENST00000397643 CASZ1Q86V15 1759 aa23.41■■□□□ 1.34
CUX2-202ENST00000397643 NINLQ9Y2I6 1382 aa23.4■■□□□ 1.34
CUX2-202ENST00000397643 KCNQ2O43526 872 aa23.4■■□□□ 1.34
CUX2-202ENST00000397643 YY1P25490 414 aa23.4■■□□□ 1.34
CUX2-202ENST00000397643 PLSCR1O15162 318 aa23.39■■□□□ 1.33
CUX2-202ENST00000397643 PTF1AQ7RTS3 328 aa23.39■■□□□ 1.33
CUX2-202ENST00000397643 ANO8Q9HCE9 1232 aaPredicted RBP23.39■■□□□ 1.33
CUX2-202ENST00000397643 NLRP6P59044 892 aa23.37■■□□□ 1.33
CUX2-202ENST00000397643 CABP1Q9NZU7 370 aa23.37■■□□□ 1.33
CUX2-202ENST00000397643 BCL9O00512 1426 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms