RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 URB2Q14146 1524 aaKnown RBP12.62□□□□□ -0.39
RTN3-206ENST00000377819 ATP2B2Q01814 1243 aa12.62□□□□□ -0.39
RTN3-206ENST00000377819 PKD2Q13563 968 aa12.62□□□□□ -0.39
RTN3-206ENST00000377819 LRRFIP2Q9Y608 721 aaKnown RBP12.62□□□□□ -0.39
RTN3-206ENST00000377819 SSR1P43307 286 aaKnown RBP12.61□□□□□ -0.39
RTN3-206ENST00000377819 ERC1Q8IUD2 1116 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 CCDC39Q9UFE4 941 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.61□□□□□ -0.39
RTN3-206ENST00000377819 RAPGEF4Q8WZA2 1011 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 ANKRD18BA2A2Z9 1011 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 INTS3Q68E01 1043 aaKnown RBP12.61□□□□□ -0.39
RTN3-206ENST00000377819 SPDYE4A6NLX3 237 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 MAP2K1Q02750 393 aaPredicted RBP12.61□□□□□ -0.39
RTN3-206ENST00000377819 CCDC146Q8IYE0 955 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 TAF4BQ92750 862 aa12.61□□□□□ -0.39
RTN3-206ENST00000377819 SOGA3Q5TF21 947 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 JAKMIP3Q5VZ66 844 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 HOOK3Q86VS8 718 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 PBRM1Q86U86 1689 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 IBSPP21815 317 aaPredicted RBP12.6□□□□□ -0.39
RTN3-206ENST00000377819 PHLDB1Q86UU1 1377 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 CUL7Q14999 1698 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 BCL11BQ9C0K0 894 aaPredicted RBP12.6□□□□□ -0.39
RTN3-206ENST00000377819 DDX19BQ9UMR2 479 aa12.6□□□□□ -0.39
RTN3-206ENST00000377819 DACH1Q9UI36 760 aa12.59□□□□□ -0.39
RTN3-206ENST00000377819 LETM1O95202 739 aaPredicted RBP12.59□□□□□ -0.39
RTN3-206ENST00000377819 HSPA5P11021 654 aaKnown RBP12.59□□□□□ -0.39
RTN3-206ENST00000377819 STK38Q15208 465 aa12.59□□□□□ -0.39
RTN3-206ENST00000377819 DHX37Q8IY37 1157 aaKnown RBP12.59□□□□□ -0.39
RTN3-206ENST00000377819 EFCAB2Q5VUJ9 269 aa12.59□□□□□ -0.39
RTN3-206ENST00000377819 CTTNBP2Q8WZ74 1663 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 PLIN1O60240 522 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 RIC3Q7Z5B4 369 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 SERPINC1P01008 464 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 KIF7Q2M1P5 1343 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 MATR3P43243 847 aaKnown RBP eCLIP12.58□□□□□ -0.41e-6■■□□□ 13.3
RTN3-206ENST00000377819 TRIM22Q8IYM9 498 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 HOMER2Q9NSB8 354 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 GNL3LQ9NVN8 582 aaKnown RBP12.58□□□□□ -0.4
RTN3-206ENST00000377819 ROCK1Q13464 1354 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 TOPBP1Q92547 1522 aa12.58□□□□□ -0.4
RTN3-206ENST00000377819 MBD3O95983 291 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 ZNF396Q96N95 335 aaPredicted RBP12.57□□□□□ -0.4
RTN3-206ENST00000377819 LRRIQ1Q96JM4 1722 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 SOGA1O94964 1423 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 ROCK2O75116 1388 aaKnown RBP12.57□□□□□ -0.4
RTN3-206ENST00000377819 GSTTP1A0A1W2PQM5 241 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 CAVIN1Q6NZI2 390 aaKnown RBP12.57□□□□□ -0.4
RTN3-206ENST00000377819 BCL2L13Q9BXK5 485 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 SSX2IPQ9Y2D8 614 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 SSBP05455 408 aaKnown RBP eCLIP12.57□□□□□ -0.4
RTN3-206ENST00000377819 LRRCC1Q9C099 1032 aa12.57□□□□□ -0.4
RTN3-206ENST00000377819 BMS1Q14692 1282 aaKnown RBP12.57□□□□□ -0.4
RTN3-206ENST00000377819 PPP1R12BO60237 982 aaPredicted RBP12.56□□□□□ -0.4
RTN3-206ENST00000377819 SMC1AQ14683 1233 aaKnown RBP12.56□□□□□ -0.4
RTN3-206ENST00000377819 FERP16591 822 aa12.56□□□□□ -0.4
RTN3-206ENST00000377819 DZIP1LQ8IYY4 767 aaKnown RBP12.56□□□□□ -0.4
RTN3-206ENST00000377819 CFAP45Q9UL16 551 aa12.55□□□□□ -0.4
RTN3-206ENST00000377819 RRP7AQ9Y3A4 280 aaKnown RBP12.55□□□□□ -0.4
RTN3-206ENST00000377819 RNF214Q8ND24 703 aa12.55□□□□□ -0.4
RTN3-206ENST00000377819 SCLT1Q96NL6 688 aa12.55□□□□□ -0.4
RTN3-206ENST00000377819 E9PSI1 815 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 ZWINTO95229 277 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 FSD1Q9BTV5 496 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 NACAP1Q9BZK3 213 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 PSME1Q06323 249 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 NECTIN2Q92692 538 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 PDE4AP27815 886 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 CCDC57Q2TAC2 916 aa12.54□□□□□ -0.4
RTN3-206ENST00000377819 SAMD9Q5K651 1589 aa12.53□□□□□ -0.4
RTN3-206ENST00000377819 NASPP49321 788 aaPredicted RBP12.53□□□□□ -0.4
RTN3-206ENST00000377819 NOL7Q9UMY1 257 aaKnown RBP12.53□□□□□ -0.4
RTN3-206ENST00000377819 WASHC2CQ9Y4E1 1318 aa12.53□□□□□ -0.4
RTN3-206ENST00000377819 RAB3IL1Q8TBN0 382 aa12.53□□□□□ -0.4
RTN3-206ENST00000377819 CRACR2AQ9BSW2 395 aa12.53□□□□□ -0.4
RTN3-206ENST00000377819 ZNF76P36508 570 aa12.53□□□□□ -0.4
RTN3-206ENST00000377819 PPP4R3AQ6IN85 833 aa12.53□□□□□ -0.4
RTN3-206ENST00000377819 MRE11P49959 708 aa12.52□□□□□ -0.4
RTN3-206ENST00000377819 CBX1P83916 185 aa12.52□□□□□ -0.4
RTN3-206ENST00000377819 PSMD1Q99460 953 aa12.52□□□□□ -0.4
RTN3-206ENST00000377819 CCDC113Q9H0I3 377 aa12.52□□□□□ -0.4
RTN3-206ENST00000377819 SLU7O95391 586 aaKnown RBP12.52□□□□□ -0.41
RTN3-206ENST00000377819 FAM193AP78312 1265 aa12.52□□□□□ -0.41
RTN3-206ENST00000377819 IMMTQ16891 758 aaKnown RBP12.52□□□□□ -0.41
RTN3-206ENST00000377819 GBP3Q9H0R5 595 aa12.52□□□□□ -0.41
RTN3-206ENST00000377819 COG6Q9Y2V7 657 aa12.52□□□□□ -0.41
RTN3-206ENST00000377819 CCDC102AQ96A19 550 aa12.52□□□□□ -0.41
RTN3-206ENST00000377819 DRC1Q96MC2 740 aa12.52□□□□□ -0.41
RTN3-206ENST00000377819 FANCD2Q9BXW9 1451 aa12.51□□□□□ -0.41
RTN3-206ENST00000377819 KDM4AO75164 1064 aa12.51□□□□□ -0.41
RTN3-206ENST00000377819 PUS7Q96PZ0 661 aaKnown RBP12.51□□□□□ -0.41
RTN3-206ENST00000377819 HIP1O00291 1037 aa12.51□□□□□ -0.41
RTN3-206ENST00000377819 CBFA2T2O43439 604 aa12.51□□□□□ -0.41
RTN3-206ENST00000377819 FERMT1Q9BQL6 677 aa12.51□□□□□ -0.41
RTN3-206ENST00000377819 TMOD2Q9NZR1 351 aa12.51□□□□□ -0.41
RTN3-206ENST00000377819 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.51□□□□□ -0.41
RTN3-206ENST00000377819 V9GYY5 206 aaPredicted RBP12.51□□□□□ -0.41
RTN3-206ENST00000377819 HMGB2P26583 209 aaKnown RBP12.51□□□□□ -0.41
RTN3-206ENST00000377819 EIF5P55010 431 aaKnown RBP12.51□□□□□ -0.41
RTN3-206ENST00000377819 ZSCAN29Q8IWY8 852 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms