RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 ATRNO75882 1429 aa27.02■■□□□ 1.92
CKS1B-203ENST00000368439 EVC2Q86UK5 1308 aa27■■□□□ 1.91
CKS1B-203ENST00000368439 RBM6P78332 1123 aaKnown RBP27■■□□□ 1.91
CKS1B-203ENST00000368439 SBNO2Q9Y2G9 1366 aa26.99■■□□□ 1.91
CKS1B-203ENST00000368439 PLCH1Q4KWH8 1693 aa26.98■■□□□ 1.91
CKS1B-203ENST00000368439 PAK3O75914 559 aaPredicted RBP26.98■■□□□ 1.91
CKS1B-203ENST00000368439 PLEKHG5O94827 1062 aa26.98■■□□□ 1.91
CKS1B-203ENST00000368439 TRPC5Q9UL62 973 aaPredicted RBP26.98■■□□□ 1.91
CKS1B-203ENST00000368439 CLSPNQ9HAW4 1339 aa26.97■■□□□ 1.91
CKS1B-203ENST00000368439 RGS12O14924 1447 aa26.97■■□□□ 1.91
CKS1B-203ENST00000368439 NWD2Q9ULI1 1742 aa26.96■■□□□ 1.91
CKS1B-203ENST00000368439 HAP1P54257 671 aaPredicted RBP26.95■■□□□ 1.9
CKS1B-203ENST00000368439 CABP1Q9NZU7 370 aa26.95■■□□□ 1.9
CKS1B-203ENST00000368439 PHRF1Q9P1Y6 1649 aaKnown RBP26.94■■□□□ 1.9
CKS1B-203ENST00000368439 UNC5CLQ8IV45 518 aa26.93■■□□□ 1.9
CKS1B-203ENST00000368439 FAM83GA6ND36 823 aa26.92■■□□□ 1.9
CKS1B-203ENST00000368439 AKAP12Q02952 1782 aa26.91■■□□□ 1.9
CKS1B-203ENST00000368439 COL14A1Q05707 1796 aaKnown RBP26.9■■□□□ 1.9
CKS1B-203ENST00000368439 NRAPQ86VF7 1730 aa26.9■■□□□ 1.9
CKS1B-203ENST00000368439 USP6P35125 1406 aa26.9■■□□□ 1.9
CKS1B-203ENST00000368439 GLI3P10071 1580 aa26.89■■□□□ 1.9
CKS1B-203ENST00000368439 BRD4O60885 1362 aaPredicted RBP26.89■■□□□ 1.9
CKS1B-203ENST00000368439 TIMELESSQ9UNS1 1208 aa26.89■■□□□ 1.9
CKS1B-203ENST00000368439 SSH2Q76I76 1423 aa26.89■■□□□ 1.89
CKS1B-203ENST00000368439 ATAD2Q6PL18 1390 aa26.87■■□□□ 1.89
CKS1B-203ENST00000368439 NUTM2GQ5VZR2 741 aa26.87■■□□□ 1.89
CKS1B-203ENST00000368439 GJD4Q96KN9 370 aaPredicted RBP26.87■■□□□ 1.89
CKS1B-203ENST00000368439 NRKQ7Z2Y5 1582 aa26.85■■□□□ 1.89
CKS1B-203ENST00000368439 ABTB2Q8N961 1025 aa26.85■■□□□ 1.89
CKS1B-203ENST00000368439 CPSF1Q10570 1443 aaKnown RBP26.84■■□□□ 1.89
CKS1B-203ENST00000368439 TESK2Q96S53 571 aa26.84■■□□□ 1.89
CKS1B-203ENST00000368439 USP19O94966 1318 aa26.84■■□□□ 1.89
CKS1B-203ENST00000368439 VPS72Q15906 364 aa26.83■■□□□ 1.89
CKS1B-203ENST00000368439 PIK3C2AO00443 1686 aa26.82■■□□□ 1.88
CKS1B-203ENST00000368439 ST20-MTHFSA0A0A6YYL1 179 aa26.82■■□□□ 1.88
CKS1B-203ENST00000368439 MON2Q7Z3U7 1717 aa26.82■■□□□ 1.88
CKS1B-203ENST00000368439 KIAA0232Q92628 1395 aa26.81■■□□□ 1.88
CKS1B-203ENST00000368439 ZNF692Q9BU19 519 aaPredicted RBP26.8■■□□□ 1.88
CKS1B-203ENST00000368439 BTG4Q9NY30 223 aa26.8■■□□□ 1.88
CKS1B-203ENST00000368439 CD163L1Q9NR16 1453 aa26.8■■□□□ 1.88
CKS1B-203ENST00000368439 UPF1Q92900 1129 aaKnown RBP eCLIP26.79■■□□□ 1.882e-28■■■□□ 15.7
CKS1B-203ENST00000368439 NLRP13Q86W25 1043 aa26.78■■□□□ 1.88
CKS1B-203ENST00000368439 PUS7Q96PZ0 661 aaKnown RBP26.78■■□□□ 1.88
CKS1B-203ENST00000368439 PRDM11Q9NQV5 511 aa26.78■■□□□ 1.88
CKS1B-203ENST00000368439 SLIT3O75094 1523 aa26.77■■□□□ 1.88
CKS1B-203ENST00000368439 USP47Q96K76 1375 aa26.76■■□□□ 1.87
CKS1B-203ENST00000368439 TTC21BQ7Z4L5 1316 aa26.76■■□□□ 1.87
CKS1B-203ENST00000368439 ZC3H6P61129 1189 aaKnown RBP26.76■■□□□ 1.87
CKS1B-203ENST00000368439 CPDO75976 1380 aa26.75■■□□□ 1.87
CKS1B-203ENST00000368439 BRWD3Q6RI45 1802 aa26.75■■□□□ 1.87
CKS1B-203ENST00000368439 CCER1Q8TC90 406 aaPredicted RBP26.75■■□□□ 1.87
CKS1B-203ENST00000368439 LMO7Q8WWI1 1683 aa26.75■■□□□ 1.87
CKS1B-203ENST00000368439 GCP02774 474 aa26.74■■□□□ 1.87
CKS1B-203ENST00000368439 CHRNA2Q15822 529 aa26.74■■□□□ 1.87
CKS1B-203ENST00000368439 KTN1Q86UP2 1357 aaKnown RBP26.73■■□□□ 1.87
CKS1B-203ENST00000368439 ONECUT3O60422 494 aaPredicted RBP26.73■■□□□ 1.87
CKS1B-203ENST00000368439 NLRP6P59044 892 aa26.73■■□□□ 1.87
CKS1B-203ENST00000368439 SLC12A5Q9H2X9 1139 aa26.72■■□□□ 1.87
CKS1B-203ENST00000368439 TTC21AQ8NDW8 1320 aa26.71■■□□□ 1.87
CKS1B-203ENST00000368439 CAMTA1Q9Y6Y1 1673 aa26.7■■□□□ 1.87
CKS1B-203ENST00000368439 USP54Q70EL1 1684 aa26.7■■□□□ 1.86
CKS1B-203ENST00000368439 SLC24A1O60721 1099 aa26.69■■□□□ 1.86
CKS1B-203ENST00000368439 TMC1Q8TDI8 760 aa26.69■■□□□ 1.86
CKS1B-203ENST00000368439 CCDC9Q9Y3X0 531 aaKnown RBP26.69■■□□□ 1.86
CKS1B-203ENST00000368439 EP400Q96L91 3159 aa26.68■■□□□ 1.86
CKS1B-203ENST00000368439 SPATA31A5Q5VU36 1347 aa26.68■■□□□ 1.86
CKS1B-203ENST00000368439 SPATA31A7Q8IWB4 1347 aa26.68■■□□□ 1.86
CKS1B-203ENST00000368439 COL18A1P39060 1754 aa26.67■■□□□ 1.86
CKS1B-203ENST00000368439 SEPT12Q8IYM1 358 aa26.66■■□□□ 1.86
CKS1B-203ENST00000368439 A0A1W2PP64 1363 aa26.66■■□□□ 1.86
CKS1B-203ENST00000368439 USP31Q70CQ4 1352 aa26.64■■□□□ 1.86
CKS1B-203ENST00000368439 NINLQ9Y2I6 1382 aa26.64■■□□□ 1.86
CKS1B-203ENST00000368439 THSD7AQ9UPZ6 1657 aa26.63■■□□□ 1.85
CKS1B-203ENST00000368439 HDGFL2Q7Z4V5 671 aaPredicted RBP26.63■■□□□ 1.85
CKS1B-203ENST00000368439 NFAT5O94916 1531 aa26.63■■□□□ 1.85
CKS1B-203ENST00000368439 EDC4Q6P2E9 1401 aaKnown RBP26.63■■□□□ 1.85
CKS1B-203ENST00000368439 SPATA31A1Q5TZJ5 1347 aa26.63■■□□□ 1.85
CKS1B-203ENST00000368439 TMF1P82094 1093 aa26.62■■□□□ 1.85
CKS1B-203ENST00000368439 FAM98CQ17RN3 349 aaKnown RBP26.62■■□□□ 1.85
CKS1B-203ENST00000368439 ZRANB1Q9UGI0 708 aa26.62■■□□□ 1.85
CKS1B-203ENST00000368439 AATKQ6ZMQ8 1374 aa26.61■■□□□ 1.85
CKS1B-203ENST00000368439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.61■■□□□ 1.85
CKS1B-203ENST00000368439 STRN4Q9NRL3 753 aa26.61■■□□□ 1.85
CKS1B-203ENST00000368439 TERF2IPQ9NYB0 399 aa26.61■■□□□ 1.85
CKS1B-203ENST00000368439 NME9Q86XW9 330 aa26.6■■□□□ 1.85
CKS1B-203ENST00000368439 COL5A2P05997 1499 aaPredicted RBP26.6■■□□□ 1.85
CKS1B-203ENST00000368439 ARHGEF25Q86VW2 580 aa26.58■■□□□ 1.85
CKS1B-203ENST00000368439 KCNH5Q8NCM2 988 aa26.58■■□□□ 1.85
CKS1B-203ENST00000368439 RGPD5Q99666 1765 aa26.58■■□□□ 1.85
CKS1B-203ENST00000368439 LARP1Q6PKG0 1096 aaKnown RBP26.57■■□□□ 1.84
CKS1B-203ENST00000368439 EVA1CP58658 441 aa26.56■■□□□ 1.84
CKS1B-203ENST00000368439 MYOM1P52179 1685 aa26.55■■□□□ 1.84
CKS1B-203ENST00000368439 KRT27Q7Z3Y8 459 aa26.55■■□□□ 1.84
CKS1B-203ENST00000368439 AXIN2Q9Y2T1 843 aa26.55■■□□□ 1.84
CKS1B-203ENST00000368439 ANKRD36BQ8N2N9 1353 aa26.55■■□□□ 1.84
CKS1B-203ENST00000368439 OVOS2A0A0J9YW53 1432 aa26.54■■□□□ 1.84
CKS1B-203ENST00000368439 OVOS2Q6IE36 1432 aa26.54■■□□□ 1.84
CKS1B-203ENST00000368439 ZBTB7CA1YPR0 619 aa26.53■■□□□ 1.84
CKS1B-203ENST00000368439 SOX12O15370 315 aa26.52■■□□□ 1.84
CKS1B-203ENST00000368439 LTN1O94822 1766 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms