RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SPATA31A5Q5VU36 1347 aa20.47■□□□□ 0.87
VPS29-201ENST00000360579 SPATA31A7Q8IWB4 1347 aa20.47■□□□□ 0.87
VPS29-201ENST00000360579 TRPM3Q9HCF6 1732 aaPredicted RBP20.46■□□□□ 0.87
VPS29-201ENST00000360579 DISP2A7MBM2 1401 aa20.45■□□□□ 0.86
VPS29-201ENST00000360579 EN1Q05925 392 aaPredicted RBP20.45■□□□□ 0.86
VPS29-201ENST00000360579 RGPD1P0DJD0 1748 aa20.44■□□□□ 0.86
VPS29-201ENST00000360579 TULP4Q9NRJ4 1543 aa20.44■□□□□ 0.86
VPS29-201ENST00000360579 NGDNQ8NEJ9 315 aaKnown RBP20.44■□□□□ 0.86
VPS29-201ENST00000360579 HIRIP3Q9BW71 556 aaPredicted RBP20.44■□□□□ 0.86
VPS29-201ENST00000360579 TRAK1Q9UPV9 953 aa20.44■□□□□ 0.86
VPS29-201ENST00000360579 ALS2Q96Q42 1657 aa20.44■□□□□ 0.86
VPS29-201ENST00000360579 ADGRB1O14514 1584 aa20.43■□□□□ 0.86
VPS29-201ENST00000360579 PRDM11Q9NQV5 511 aa20.43■□□□□ 0.86
VPS29-201ENST00000360579 MINK1Q8N4C8 1332 aaPredicted RBP20.43■□□□□ 0.86
VPS29-201ENST00000360579 WASLO00401 505 aaPredicted RBP20.42■□□□□ 0.86
VPS29-201ENST00000360579 PRR36Q9H6K5 1346 aa20.42■□□□□ 0.86
VPS29-201ENST00000360579 PAK3O75914 559 aaPredicted RBP20.41■□□□□ 0.86
VPS29-201ENST00000360579 R3HDM1Q15032 1099 aaKnown RBP20.4■□□□□ 0.86
VPS29-201ENST00000360579 THSD7AQ9UPZ6 1657 aa20.39■□□□□ 0.86
VPS29-201ENST00000360579 FAM182BQ5T319 152 aa20.39■□□□□ 0.85
VPS29-201ENST00000360579 STAC3Q96MF2 364 aa20.39■□□□□ 0.85
VPS29-201ENST00000360579 SPATA31A1Q5TZJ5 1347 aa20.38■□□□□ 0.85
VPS29-201ENST00000360579 FAM196AQ6ZSG2 479 aa20.38■□□□□ 0.85
VPS29-201ENST00000360579 PARD3Q8TEW0 1356 aa20.37■□□□□ 0.85
VPS29-201ENST00000360579 KIAA0232Q92628 1395 aa20.35■□□□□ 0.85
VPS29-201ENST00000360579 EZH2Q15910 746 aaKnown RBP20.35■□□□□ 0.85
VPS29-201ENST00000360579 CRYBG1Q9Y4K1 1723 aa20.35■□□□□ 0.85
VPS29-201ENST00000360579 DCAF11Q8TEB1 546 aa20.34■□□□□ 0.85
VPS29-201ENST00000360579 CAMKK2Q96RR4 588 aa20.34■□□□□ 0.85
VPS29-201ENST00000360579 ATP7BP35670 1465 aa20.34■□□□□ 0.85
VPS29-201ENST00000360579 TNS1Q9HBL0 1735 aaKnown RBP20.33■□□□□ 0.85
VPS29-201ENST00000360579 TRIM37O94972 964 aa20.33■□□□□ 0.85
VPS29-201ENST00000360579 NUDT16Q96DE0 195 aaKnown RBP20.33■□□□□ 0.85
VPS29-201ENST00000360579 STRN4Q9NRL3 753 aa20.33■□□□□ 0.85
VPS29-201ENST00000360579 KDM2AQ9Y2K7 1162 aa20.33■□□□□ 0.85
VPS29-201ENST00000360579 ITSN1Q15811 1721 aa20.31■□□□□ 0.84
VPS29-201ENST00000360579 APBA3O96018 575 aa20.31■□□□□ 0.84
VPS29-201ENST00000360579 CHRNA2Q15822 529 aa20.31■□□□□ 0.84
VPS29-201ENST00000360579 EVA1CP58658 441 aa20.3■□□□□ 0.84
VPS29-201ENST00000360579 PDE3BQ13370 1112 aa20.3■□□□□ 0.84
VPS29-201ENST00000360579 BARGINQ6ZT62 677 aa20.3■□□□□ 0.84
VPS29-201ENST00000360579 RAB3GAP2Q9H2M9 1393 aa20.3■□□□□ 0.84
VPS29-201ENST00000360579 ZC3H6P61129 1189 aaKnown RBP20.29■□□□□ 0.84
VPS29-201ENST00000360579 SSH2Q76I76 1423 aa20.27■□□□□ 0.84
VPS29-201ENST00000360579 PHRF1Q9P1Y6 1649 aaKnown RBP20.27■□□□□ 0.84
VPS29-201ENST00000360579 POLR3AO14802 1390 aaPredicted RBP20.27■□□□□ 0.84
VPS29-201ENST00000360579 NBPF8Q3BBV2 869 aa20.27■□□□□ 0.84
VPS29-201ENST00000360579 NBPF14Q5TI25 921 aa20.27■□□□□ 0.84
VPS29-201ENST00000360579 USP35Q9P2H5 1018 aa20.27■□□□□ 0.84
VPS29-201ENST00000360579 CDK19Q9BWU1 502 aa20.26■□□□□ 0.83
VPS29-201ENST00000360579 CCDC61Q9Y6R9 512 aa20.26■□□□□ 0.83
VPS29-201ENST00000360579 NUTM2GQ5VZR2 741 aa20.25■□□□□ 0.83
VPS29-201ENST00000360579 TCP11L2Q8N4U5 519 aa20.25■□□□□ 0.83
VPS29-201ENST00000360579 CNKSR2Q8WXI2 1034 aa20.25■□□□□ 0.83
VPS29-201ENST00000360579 ACEP12821 1306 aa20.25■□□□□ 0.83
VPS29-201ENST00000360579 CPDO75976 1380 aa20.24■□□□□ 0.83
VPS29-201ENST00000360579 C11orf95C9JLR9 678 aaPredicted RBP20.24■□□□□ 0.83
VPS29-201ENST00000360579 THRAP3Q9Y2W1 955 aaKnown RBP20.24■□□□□ 0.83
VPS29-201ENST00000360579 ARHGEF28Q8N1W1 1705 aaKnown RBP20.24■□□□□ 0.83
VPS29-201ENST00000360579 PLEKHG3A1L390 1219 aa20.23■□□□□ 0.83
VPS29-201ENST00000360579 ABTB2Q8N961 1025 aa20.23■□□□□ 0.83
VPS29-201ENST00000360579 LARP1Q6PKG0 1096 aaKnown RBP20.22■□□□□ 0.83
VPS29-201ENST00000360579 RREB1Q92766 1687 aa20.2■□□□□ 0.82
VPS29-201ENST00000360579 USP19O94966 1318 aa20.2■□□□□ 0.82
VPS29-201ENST00000360579 NRKQ7Z2Y5 1582 aa20.2■□□□□ 0.82
VPS29-201ENST00000360579 CAMTA1Q9Y6Y1 1673 aa20.19■□□□□ 0.82
VPS29-201ENST00000360579 NLRP13Q86W25 1043 aa20.19■□□□□ 0.82
VPS29-201ENST00000360579 TOPAZ1Q8N9V7 1692 aa20.19■□□□□ 0.82
VPS29-201ENST00000360579 SPON1Q9HCB6 807 aa20.18■□□□□ 0.82
VPS29-201ENST00000360579 DCAF8L1A6NGE4 600 aa20.17■□□□□ 0.82
VPS29-201ENST00000360579 GCP02774 474 aa20.17■□□□□ 0.82
VPS29-201ENST00000360579 YY1P25490 414 aa20.17■□□□□ 0.82
VPS29-201ENST00000360579 PPP1R1BQ9UD71 204 aaPredicted RBP20.17■□□□□ 0.82
VPS29-201ENST00000360579 BRD4O60885 1362 aaPredicted RBP20.17■□□□□ 0.82
VPS29-201ENST00000360579 LMO7Q8WWI1 1683 aa20.16■□□□□ 0.82
VPS29-201ENST00000360579 NUP188Q5SRE5 1749 aa20.16■□□□□ 0.82
VPS29-201ENST00000360579 COL5A2P05997 1499 aaPredicted RBP20.14■□□□□ 0.81
VPS29-201ENST00000360579 KCNQ2O43526 872 aa20.14■□□□□ 0.81
VPS29-201ENST00000360579 OVOS2A0A0G2JMS6 1433 aa20.13■□□□□ 0.81
VPS29-201ENST00000360579 OVOS2A0A0J9YW53 1432 aa20.13■□□□□ 0.81
VPS29-201ENST00000360579 CRB1P82279 1406 aa20.13■□□□□ 0.81
VPS29-201ENST00000360579 OVOS2Q6IE36 1432 aa20.13■□□□□ 0.81
VPS29-201ENST00000360579 NINLQ9Y2I6 1382 aa20.13■□□□□ 0.81
VPS29-201ENST00000360579 SRPK2P78362 688 aaKnown RBP20.13■□□□□ 0.81
VPS29-201ENST00000360579 PPIP5K1Q6PFW1 1433 aa20.12■□□□□ 0.81
VPS29-201ENST00000360579 HOXD11P31277 338 aaPredicted RBP20.12■□□□□ 0.81
VPS29-201ENST00000360579 PARP4Q9UKK3 1724 aaKnown RBP20.12■□□□□ 0.81
VPS29-201ENST00000360579 KIAA1210Q9ULL0 1709 aa20.11■□□□□ 0.81
VPS29-201ENST00000360579 PLSCR1O15162 318 aa20.11■□□□□ 0.81
VPS29-201ENST00000360579 AATKQ6ZMQ8 1374 aa20.09■□□□□ 0.81
VPS29-201ENST00000360579 DDB1Q16531 1140 aa20.09■□□□□ 0.81
VPS29-201ENST00000360579 CENPJQ9HC77 1338 aaPredicted RBP20.08■□□□□ 0.81
VPS29-201ENST00000360579 NLRP6P59044 892 aa20.07■□□□□ 0.8
VPS29-201ENST00000360579 RGPD3A6NKT7 1758 aaPredicted RBP20.07■□□□□ 0.8
VPS29-201ENST00000360579 RGPD4Q7Z3J3 1758 aa20.07■□□□□ 0.8
VPS29-201ENST00000360579 ZBTB7CA1YPR0 619 aa20.06■□□□□ 0.8
VPS29-201ENST00000360579 TOM1L2Q6ZVM7 507 aa20.06■□□□□ 0.8
VPS29-201ENST00000360579 CDCA7Q9BWT1 371 aaPredicted RBP20.06■□□□□ 0.8
VPS29-201ENST00000360579 BCL11BQ9C0K0 894 aaPredicted RBP20.06■□□□□ 0.8
VPS29-201ENST00000360579 CABP2Q9NPB3 220 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms