RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 NINLQ9Y2I6 1382 aa19.51■□□□□ 0.71
RTN3-205ENST00000356000 PPP6R1Q9UPN7 881 aa19.51■□□□□ 0.71
RTN3-205ENST00000356000 PDZRN3Q9UPQ7 1066 aa19.51■□□□□ 0.71
RTN3-205ENST00000356000 SPDYE4A6NLX3 237 aa19.5■□□□□ 0.71
RTN3-205ENST00000356000 BRD2P25440 801 aaKnown RBP19.5■□□□□ 0.71
RTN3-205ENST00000356000 MFAP1P55081 439 aaKnown RBP19.5■□□□□ 0.71
RTN3-205ENST00000356000 NKTRP30414 1462 aaKnown RBP19.49■□□□□ 0.71
RTN3-205ENST00000356000 EHBP1L1Q8N3D4 1523 aa19.49■□□□□ 0.71
RTN3-205ENST00000356000 ST20-MTHFSA0A0A6YYL1 179 aa19.49■□□□□ 0.71
RTN3-205ENST00000356000 KIAA2012Q0VF49 1180 aa19.49■□□□□ 0.71
RTN3-205ENST00000356000 IGSF3O75054 1194 aa19.49■□□□□ 0.71
RTN3-205ENST00000356000 CARD11Q9BXL7 1154 aa19.49■□□□□ 0.71
RTN3-205ENST00000356000 C3P01024 1663 aa19.48■□□□□ 0.71
RTN3-205ENST00000356000 KIDINS220Q9ULH0 1771 aa19.48■□□□□ 0.71
RTN3-205ENST00000356000 KCNJ4P48050 445 aa19.48■□□□□ 0.71
RTN3-205ENST00000356000 SLC4A1APQ9BWU0 796 aaKnown RBP19.48■□□□□ 0.71
RTN3-205ENST00000356000 PDCL2Q8N4E4 241 aa19.48■□□□□ 0.71
RTN3-205ENST00000356000 KIF3AQ9Y496 699 aa19.48■□□□□ 0.71
RTN3-205ENST00000356000 TRAPPC8Q9Y2L5 1435 aa19.47■□□□□ 0.71
RTN3-205ENST00000356000 ZSCAN23Q3MJ62 389 aa19.47■□□□□ 0.71
RTN3-205ENST00000356000 SAMD9LQ8IVG5 1584 aa19.47■□□□□ 0.71
RTN3-205ENST00000356000 GABPB1Q06547 395 aaPredicted RBP19.46■□□□□ 0.71
RTN3-205ENST00000356000 FEZ1Q99689 392 aa19.45■□□□□ 0.7
RTN3-205ENST00000356000 BCL2L12Q9HB09 334 aa19.45■□□□□ 0.7
RTN3-205ENST00000356000 INO80Q9ULG1 1556 aaPredicted RBP19.45■□□□□ 0.7
RTN3-205ENST00000356000 ADGBQ8N7X0 1667 aa19.44■□□□□ 0.7
RTN3-205ENST00000356000 PLXNC1O60486 1568 aa19.44■□□□□ 0.7
RTN3-205ENST00000356000 ANKRD30AQ9BXX3 1397 aa19.44■□□□□ 0.7
RTN3-205ENST00000356000 AMER1Q5JTC6 1135 aaPredicted RBP19.44■□□□□ 0.7
RTN3-205ENST00000356000 CERKQ8TCT0 537 aa19.44■□□□□ 0.7
RTN3-205ENST00000356000 COG6Q9Y2V7 657 aa19.44■□□□□ 0.7
RTN3-205ENST00000356000 BAG4O95429 457 aaKnown RBP19.43■□□□□ 0.7
RTN3-205ENST00000356000 PRIM1P49642 420 aaKnown RBP19.43■□□□□ 0.7
RTN3-205ENST00000356000 ZNF142P52746 1687 aaPredicted RBP19.43■□□□□ 0.7
RTN3-205ENST00000356000 ESF1Q9H501 851 aaKnown RBP19.43■□□□□ 0.7
RTN3-205ENST00000356000 SSFA2P28290 1259 aa19.42■□□□□ 0.7
RTN3-205ENST00000356000 CCDC66A2RUB6 948 aa19.42■□□□□ 0.7
RTN3-205ENST00000356000 E9PSI1 815 aa19.42■□□□□ 0.7
RTN3-205ENST00000356000 CHMP4AQ9BY43 222 aa19.42■□□□□ 0.7
RTN3-205ENST00000356000 STRCQ7RTU9 1775 aa19.42■□□□□ 0.7
RTN3-205ENST00000356000 U2AF2P26368 475 aaKnown RBP eCLIP19.41■□□□□ 0.73e-6■■■□□ 15.2
RTN3-205ENST00000356000 CAVIN1Q6NZI2 390 aaKnown RBP19.41■□□□□ 0.7
RTN3-205ENST00000356000 ANKRD7Q92527 254 aa19.41■□□□□ 0.7
RTN3-205ENST00000356000 OGFRQ9NZT2 677 aa19.41■□□□□ 0.7
RTN3-205ENST00000356000 CC2D1BQ5T0F9 858 aaKnown RBP19.41■□□□□ 0.7
RTN3-205ENST00000356000 PCDHB15Q9Y5E8 787 aa19.41■□□□□ 0.7
RTN3-205ENST00000356000 ROCK1Q13464 1354 aa19.41■□□□□ 0.7
RTN3-205ENST00000356000 ATP7AQ04656 1500 aa19.41■□□□□ 0.7
RTN3-205ENST00000356000 GPATCH8Q9UKJ3 1502 aaKnown RBP19.41■□□□□ 0.7
RTN3-205ENST00000356000 PANK1Q8TE04 598 aa19.4■□□□□ 0.7
RTN3-205ENST00000356000 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.4■□□□□ 0.76e-7■■■□□ 14.6
RTN3-205ENST00000356000 TULP2O00295 520 aa19.4■□□□□ 0.7
RTN3-205ENST00000356000 MAPK8IP2Q13387 824 aaPredicted RBP19.39■□□□□ 0.7
RTN3-205ENST00000356000 TIGD1Q96MW7 591 aa19.39■□□□□ 0.7
RTN3-205ENST00000356000 PLA2R1Q13018 1463 aa19.39■□□□□ 0.7
RTN3-205ENST00000356000 SLFN14P0C7P3 912 aa19.39■□□□□ 0.69
RTN3-205ENST00000356000 PIBF1Q8WXW3 757 aa19.39■□□□□ 0.69
RTN3-205ENST00000356000 SPINK5Q9NQ38 1064 aaPredicted RBP19.38■□□□□ 0.69
RTN3-205ENST00000356000 PZPP20742 1482 aa19.38■□□□□ 0.69
RTN3-205ENST00000356000 FAM177BA6PVY3 158 aa19.38■□□□□ 0.69
RTN3-205ENST00000356000 AFAP1Q8N556 730 aa19.37■□□□□ 0.69
RTN3-205ENST00000356000 RWDD1Q9H446 243 aaPredicted RBP19.37■□□□□ 0.69
RTN3-205ENST00000356000 RNF216Q9NWF9 866 aaPredicted RBP19.37■□□□□ 0.69
RTN3-205ENST00000356000 NOLC1Q14978 699 aaKnown RBP eCLIP19.36■□□□□ 0.695e-6■□□□□ 9.2
RTN3-205ENST00000356000 LMBRD1Q9NUN5 540 aa19.36■□□□□ 0.69
RTN3-205ENST00000356000 SYCP2Q9BX26 1530 aa19.36■□□□□ 0.69
RTN3-205ENST00000356000 WDR43Q15061 677 aaKnown RBP eCLIP19.36■□□□□ 0.69
RTN3-205ENST00000356000 LRSAM1Q6UWE0 723 aa19.35■□□□□ 0.69
RTN3-205ENST00000356000 A2MP01023 1474 aa19.35■□□□□ 0.69
RTN3-205ENST00000356000 CAPN2P17655 700 aa19.35■□□□□ 0.69
RTN3-205ENST00000356000 MLECQ14165 292 aa19.35■□□□□ 0.69
RTN3-205ENST00000356000 FKBP5Q13451 457 aaPredicted RBP19.34■□□□□ 0.69
RTN3-205ENST00000356000 PTMAP06454 111 aaKnown RBP19.34■□□□□ 0.69
RTN3-205ENST00000356000 MMP14P50281 582 aa19.34■□□□□ 0.69
RTN3-205ENST00000356000 SPAG9O60271 1321 aaKnown RBP19.34■□□□□ 0.69
RTN3-205ENST00000356000 CERS3Q8IU89 383 aa19.33■□□□□ 0.69
RTN3-205ENST00000356000 K7ELQ4 463 aaPredicted RBP19.33■□□□□ 0.68
RTN3-205ENST00000356000 SPTLC3Q9NUV7 552 aa19.33■□□□□ 0.68
RTN3-205ENST00000356000 TSPYL1Q9H0U9 437 aa19.32■□□□□ 0.68
RTN3-205ENST00000356000 MCTP1Q6DN14 999 aa19.32■□□□□ 0.68
RTN3-205ENST00000356000 FOXD4L1Q9NU39 408 aa19.32■□□□□ 0.68
RTN3-205ENST00000356000 HSPA2P54652 639 aa19.31■□□□□ 0.68
RTN3-205ENST00000356000 CAMSAP2Q08AD1 1489 aa19.31■□□□□ 0.68
RTN3-205ENST00000356000 CTIFO43310 598 aaKnown RBP19.31■□□□□ 0.68
RTN3-205ENST00000356000 ZBTB7CA1YPR0 619 aa19.3■□□□□ 0.68
RTN3-205ENST00000356000 CALCOCO1Q9P1Z2 691 aa19.3■□□□□ 0.68
RTN3-205ENST00000356000 NPC1L1Q9UHC9 1359 aa19.3■□□□□ 0.68
RTN3-205ENST00000356000 KIF2CQ99661 725 aa19.3■□□□□ 0.68
RTN3-205ENST00000356000 TRIM6-TRIM34B2RNG4 842 aa19.29■□□□□ 0.68
RTN3-205ENST00000356000 CD2BP2O95400 341 aaKnown RBP19.29■□□□□ 0.68
RTN3-205ENST00000356000 TRIM34Q9BYJ4 488 aa19.29■□□□□ 0.68
RTN3-205ENST00000356000 YY1AP1Q9H869 796 aa19.29■□□□□ 0.68
RTN3-205ENST00000356000 MYO3AQ8NEV4 1616 aa19.29■□□□□ 0.68
RTN3-205ENST00000356000 PKD2Q13563 968 aa19.29■□□□□ 0.68
RTN3-205ENST00000356000 TERF2Q15554 542 aa19.29■□□□□ 0.68
RTN3-205ENST00000356000 DHX37Q8IY37 1157 aaKnown RBP19.28■□□□□ 0.68
RTN3-205ENST00000356000 GAS2L2Q8NHY3 880 aa19.28■□□□□ 0.68
RTN3-205ENST00000356000 LTBP4Q8N2S1 1624 aa19.28■□□□□ 0.68
RTN3-205ENST00000356000 DIAPH3Q9NSV4 1193 aa19.28■□□□□ 0.68
RTN3-205ENST00000356000 GPT2Q8TD30 523 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms