RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 TIGD1Q96MW7 591 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 PABPN1LA6NDY0 278 aaKnown RBP20.82■□□□□ 0.92
SMAD4-201ENST00000342988 NLRP13Q86W25 1043 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 CCDC27Q2M243 656 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 E9PSI1 815 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 CCDC192P0DO97 292 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 SOGA3Q5TF21 947 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 KIAA1328Q86T90 577 aa20.81■□□□□ 0.92
SMAD4-201ENST00000342988 TAOK3Q9H2K8 898 aa20.81■□□□□ 0.92
SMAD4-201ENST00000342988 MATR3P43243 847 aaKnown RBP eCLIP20.81■□□□□ 0.926e-9■■□□□ 12.9
SMAD4-201ENST00000342988 MLECQ14165 292 aa20.81■□□□□ 0.92
SMAD4-201ENST00000342988 TAF4BQ92750 862 aa20.81■□□□□ 0.92
SMAD4-201ENST00000342988 BAZ1BQ9UIG0 1483 aaKnown RBP20.8■□□□□ 0.92
SMAD4-201ENST00000342988 CNTROBQ8N137 903 aa20.8■□□□□ 0.92
SMAD4-201ENST00000342988 FAM114A1Q8IWE2 563 aa20.8■□□□□ 0.92
SMAD4-201ENST00000342988 TANGO6Q9C0B7 1094 aa20.8■□□□□ 0.92
SMAD4-201ENST00000342988 TBC1D2BQ9UPU7 963 aa20.8■□□□□ 0.92
SMAD4-201ENST00000342988 FOSBP53539 338 aa20.8■□□□□ 0.92
SMAD4-201ENST00000342988 AAMPQ13685 434 aa20.79■□□□□ 0.92
SMAD4-201ENST00000342988 TRHP20396 242 aaPredicted RBP20.79■□□□□ 0.92
SMAD4-201ENST00000342988 PDE4AP27815 886 aa20.79■□□□□ 0.92
SMAD4-201ENST00000342988 DDX46Q7L014 1031 aaKnown RBP20.78■□□□□ 0.92
SMAD4-201ENST00000342988 BMP2KQ9NSY1 1161 aaPredicted RBP20.78■□□□□ 0.92
SMAD4-201ENST00000342988 VGFO15240 615 aaPredicted RBP20.77■□□□□ 0.92
SMAD4-201ENST00000342988 RRP9O43818 475 aaKnown RBP20.77■□□□□ 0.92
SMAD4-201ENST00000342988 CCDC150Q8NCX0 1101 aa20.77■□□□□ 0.92
SMAD4-201ENST00000342988 DHX37Q8IY37 1157 aaKnown RBP20.77■□□□□ 0.91
SMAD4-201ENST00000342988 KIF2AO00139 706 aaPredicted RBP20.76■□□□□ 0.91
SMAD4-201ENST00000342988 SPECC1LQ69YQ0 1117 aa20.76■□□□□ 0.91
SMAD4-201ENST00000342988 SETD5Q9C0A6 1442 aa20.76■□□□□ 0.91
SMAD4-201ENST00000342988 FERMT1Q9BQL6 677 aa20.76■□□□□ 0.91
SMAD4-201ENST00000342988 CALCOCO1Q9P1Z2 691 aa20.76■□□□□ 0.91
SMAD4-201ENST00000342988 SSX2IPQ9Y2D8 614 aa20.76■□□□□ 0.91
SMAD4-201ENST00000342988 DDX12PQ92771 950 aa20.76■□□□□ 0.91
SMAD4-201ENST00000342988 COMMD10Q9Y6G5 202 aa20.75■□□□□ 0.91
SMAD4-201ENST00000342988 SSR1P43307 286 aaKnown RBP20.75■□□□□ 0.91
SMAD4-201ENST00000342988 VPS36Q86VN1 386 aa20.75■□□□□ 0.91
SMAD4-201ENST00000342988 ANKRD1Q15327 319 aa20.74■□□□□ 0.91
SMAD4-201ENST00000342988 IFFO1Q0D2I5 559 aa20.74■□□□□ 0.91
SMAD4-201ENST00000342988 LTV1Q96GA3 475 aaPredicted RBP20.74■□□□□ 0.91
SMAD4-201ENST00000342988 AEBP2Q6ZN18 517 aaPredicted RBP20.74■□□□□ 0.91
SMAD4-201ENST00000342988 TSNARE1Q96NA8 513 aa20.74■□□□□ 0.91
SMAD4-201ENST00000342988 NAP1L3Q99457 506 aaPredicted RBP20.74■□□□□ 0.91
SMAD4-201ENST00000342988 WASHC4Q2M389 1173 aa20.74■□□□□ 0.91
SMAD4-201ENST00000342988 TRIM22Q8IYM9 498 aa20.73■□□□□ 0.91
SMAD4-201ENST00000342988 GSTTP1A0A1W2PQM5 241 aa20.73■□□□□ 0.91
SMAD4-201ENST00000342988 WDR66Q8TBY9 1149 aa20.73■□□□□ 0.91
SMAD4-201ENST00000342988 CCDC6Q16204 474 aa20.73■□□□□ 0.91
SMAD4-201ENST00000342988 CCDC113Q9H0I3 377 aa20.73■□□□□ 0.91
SMAD4-201ENST00000342988 RAB3IL1Q8TBN0 382 aa20.73■□□□□ 0.91
SMAD4-201ENST00000342988 KIF3CO14782 793 aa20.72■□□□□ 0.91
SMAD4-201ENST00000342988 HMGB1P09429 215 aaKnown RBP20.72■□□□□ 0.91
SMAD4-201ENST00000342988 NGEFQ8N5V2 710 aa20.72■□□□□ 0.91
SMAD4-201ENST00000342988 NOL3O60936 208 aaKnown RBP20.72■□□□□ 0.91
SMAD4-201ENST00000342988 PDIA4P13667 645 aaKnown RBP20.71■□□□□ 0.91
SMAD4-201ENST00000342988 ERICH4A6NGS2 130 aa20.71■□□□□ 0.91
SMAD4-201ENST00000342988 BBXQ8WY36 941 aaPredicted RBP20.71■□□□□ 0.91
SMAD4-201ENST00000342988 FMNL2Q96PY5 1086 aa20.71■□□□□ 0.91
SMAD4-201ENST00000342988 UBE4AQ14139 1066 aa20.71■□□□□ 0.91
SMAD4-201ENST00000342988 COG3Q96JB2 828 aa20.7■□□□□ 0.9
SMAD4-201ENST00000342988 HSPA5P11021 654 aaKnown RBP20.7■□□□□ 0.9
SMAD4-201ENST00000342988 SPC24Q8NBT2 197 aa20.7■□□□□ 0.9
SMAD4-201ENST00000342988 PUS7Q96PZ0 661 aaKnown RBP20.7■□□□□ 0.9
SMAD4-201ENST00000342988 SIN3AQ96ST3 1273 aa20.7■□□□□ 0.9
SMAD4-201ENST00000342988 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.7■□□□□ 0.9
SMAD4-201ENST00000342988 LRRC45Q96CN5 670 aa20.7■□□□□ 0.9
SMAD4-201ENST00000342988 SLU7O95391 586 aaKnown RBP20.69■□□□□ 0.9
SMAD4-201ENST00000342988 STK38Q15208 465 aa20.69■□□□□ 0.9
SMAD4-201ENST00000342988 API5Q9BZZ5 524 aaKnown RBP20.69■□□□□ 0.9
SMAD4-201ENST00000342988 MPHOSPH10O00566 681 aaKnown RBP20.69■□□□□ 0.9
SMAD4-201ENST00000342988 GNL3LQ9NVN8 582 aaKnown RBP20.69■□□□□ 0.9
SMAD4-201ENST00000342988 TNMDQ9H2S6 317 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 FANCIQ9NVI1 1328 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 PRDM2Q13029 1718 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 ZHX3Q9H4I2 956 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 CDKL5O76039 1030 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 AEBP1Q8IUX7 1158 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 C22orf23Q9BZE7 217 aa20.68■□□□□ 0.9
SMAD4-201ENST00000342988 SMTNL1A8MU46 457 aa20.67■□□□□ 0.9
SMAD4-201ENST00000342988 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.67■□□□□ 0.9
SMAD4-201ENST00000342988 SETSIPP0DME0 302 aa20.67■□□□□ 0.9
SMAD4-201ENST00000342988 PPP4R3AQ6IN85 833 aa20.67■□□□□ 0.9
SMAD4-201ENST00000342988 CCDC57Q2TAC2 916 aa20.67■□□□□ 0.9
SMAD4-201ENST00000342988 ARHGAP29Q52LW3 1261 aa20.67■□□□□ 0.9
SMAD4-201ENST00000342988 GOPCQ9HD26 462 aa20.67■□□□□ 0.9
SMAD4-201ENST00000342988 NOL7Q9UMY1 257 aaKnown RBP20.67■□□□□ 0.9
SMAD4-201ENST00000342988 MYBBP1AQ9BQG0 1328 aaKnown RBP20.66■□□□□ 0.9
SMAD4-201ENST00000342988 UQCRHLA0A096LP55 91 aa20.66■□□□□ 0.9
SMAD4-201ENST00000342988 FSD2A1L4K1 749 aa20.66■□□□□ 0.9
SMAD4-201ENST00000342988 UQCRHP07919 91 aa20.66■□□□□ 0.9
SMAD4-201ENST00000342988 SPA17Q15506 151 aa20.66■□□□□ 0.9
SMAD4-201ENST00000342988 DRC1Q96MC2 740 aa20.66■□□□□ 0.9
SMAD4-201ENST00000342988 FGFR1OPO95684 399 aaKnown RBP20.66■□□□□ 0.9
SMAD4-201ENST00000342988 BAZ1AQ9NRL2 1556 aaPredicted RBP20.65■□□□□ 0.9
SMAD4-201ENST00000342988 UBXN4Q92575 508 aa20.65■□□□□ 0.9
SMAD4-201ENST00000342988 GPATCH11Q8N954 259 aa20.65■□□□□ 0.9
SMAD4-201ENST00000342988 SYTL4Q96C24 671 aaPredicted RBP20.65■□□□□ 0.9
SMAD4-201ENST00000342988 CEP135Q66GS9 1140 aa20.65■□□□□ 0.9
SMAD4-201ENST00000342988 FAM177A1Q8N128 213 aaPredicted RBP20.65■□□□□ 0.9
SMAD4-201ENST00000342988 TNIP1Q15025 636 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms