RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TONSLQ96HA7 1378 aa9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 WBP4O75554 376 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 FAM177A1Q8N128 213 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 COMMD10Q9Y6G5 202 aa9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 NBPF11Q86T75 865 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 ITPRIPQ8IWB1 547 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 FBF1Q8TES7 1133 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 SKOR1P84550 965 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 RABGAP1Q9Y3P9 1069 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 LRRFIP2Q9Y608 721 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 CCDC158Q5M9N0 1113 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 CCDC144CPQ8IYA2 1237 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 BICD2Q8TD16 824 aa9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 CWC25Q9NXE8 425 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-201ENST00000313860 GTF2F1P35269 517 aaKnown RBP eCLIP9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 MRFAP1L1Q96HT8 127 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 VCXQ9H320 206 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 KIF5CO60282 957 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 RUFY3Q7L099 469 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 DYNC1I1O14576 645 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 PSMC4P43686 418 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 SLC9A5Q14940 896 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 STMN1P16949 149 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 C6orf163Q5TEZ5 329 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 SASS6Q6UVJ0 657 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 FRMD3A2A2Y4 597 aa9.04□□□□□ -0.96
LIMCH1-201ENST00000313860 UQCRHLA0A096LP55 91 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 DHX16O60231 1041 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 UQCRHP07919 91 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 ZNF853P0CG23 659 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 VIMP08670 466 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 EIF4G2P78344 907 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 SPTY2D1Q68D10 685 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 CACTINQ8WUQ7 758 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 GJC2Q5T442 439 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 POLR3GO15318 223 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 FERP16591 822 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 CEP135Q66GS9 1140 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 RAB3IL1Q8TBN0 382 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 ANLNQ9NQW6 1124 aa9.03□□□□□ -0.96
LIMCH1-201ENST00000313860 NUCB1Q02818 461 aa9.02□□□□□ -0.96
LIMCH1-201ENST00000313860 BICD1Q96G01 975 aa9.02□□□□□ -0.96
LIMCH1-201ENST00000313860 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 USP37Q86T82 979 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 SMC4Q9NTJ3 1288 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 MXRA7P84157 204 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 CTAGE1Q96RT6 745 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 XAB2Q9HCS7 855 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 FRMD4BQ9Y2L6 1034 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 VGLL3A8MV65 326 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 CXorf38Q8TB03 319 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 GOPCQ9HD26 462 aa9.02□□□□□ -0.97
LIMCH1-201ENST00000313860 ERCC5P28715 1186 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 MAP9Q49MG5 647 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 CALCOCO1Q9P1Z2 691 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 CAVIN1Q6NZI2 390 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 GIMAP4Q9NUV9 329 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 ANAPC15P60006 121 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 AMOTQ4VCS5 1084 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 ZMYND15Q9H091 742 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 FLCNQ8NFG4 579 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 HOMER2Q9NSB8 354 aa9.01□□□□□ -0.97
LIMCH1-201ENST00000313860 DYTNA2CJ06 578 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 DIAPH1O60610 1272 aaKnown RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 KDM4AO75164 1064 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 FRAT2O75474 233 aaPredicted RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 CCDC152Q4G0S7 254 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 CTAGE6Q86UF2 777 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 SYF2O95926 243 aaKnown RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 KIF5AQ12840 1032 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 GBP3Q9H0R5 595 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 SPC24Q8NBT2 197 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 SREK1Q8WXA9 508 aaKnown RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 BAG1Q99933 345 aaPredicted RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 SKOR2Q2VWA4 1001 aaPredicted RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 TTC31Q49AM3 519 aaPredicted RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 LRRC23Q53EV4 343 aaPredicted RBP9□□□□□ -0.97
LIMCH1-201ENST00000313860 GPATCH3Q96I76 525 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 ANAPC4Q9UJX5 808 aa9□□□□□ -0.97
LIMCH1-201ENST00000313860 ZNF280CQ8ND82 737 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 ATP2A3Q93084 1043 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 ERC2O15083 957 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 TMF1P82094 1093 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 CEP128Q6ZU80 1094 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 FAM107BQ9H098 131 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 ST18O60284 1047 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 MPNDQ8N594 471 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 SCLT1Q96NL6 688 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 MS4A1P11836 297 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 FAM161AQ3B820 660 aa8.99□□□□□ -0.97
LIMCH1-201ENST00000313860 OLFM4Q6UX06 510 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 TSPY2A6NKD2 308 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 TSPY3P0CV98 308 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 TSPY8P0CW00 308 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 BRD2P25440 801 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 CASQ1P31415 396 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 RAP1GDS1P52306 607 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 TSPY1Q01534 308 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 181.9 ms